Wall clock time and date at job start Sat Apr 11 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47108 * 2 1 4 4 N 1.28430 * 125.18802 * 275.10773 * 3 2 1 5 5 C 1.30844 * 110.98138 * 179.97438 * 4 3 2 6 6 C 1.39812 * 107.87124 * 359.77740 * 5 4 3 7 7 Cl 1.73598 * 127.33301 * 180.26132 * 6 5 4 8 8 C 1.36745 * 125.18193 * 95.07115 * 3 2 1 9 9 C 1.47026 * 126.91143 * 359.97438 * 8 3 2 10 10 O 1.21647 * 120.00116 * 258.18816 * 9 8 3 11 11 N 1.34783 * 119.99886 * 78.17460 * 9 8 3 12 12 C 1.46501 * 119.99703 * 174.91939 * 11 9 8 13 13 C 1.53004 * 109.46845 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.70093 * 298.65849 * 13 12 11 15 15 C 1.52760 * 109.50840 * 178.54157 * 13 12 11 16 16 C 1.53036 * 109.38206 * 185.70668 * 15 13 12 17 17 C 1.53043 * 109.54008 * 61.24172 * 16 15 13 18 18 C 1.53192 * 109.30891 * 298.63347 * 17 16 15 19 19 N 1.46927 * 109.58312 * 59.01572 * 13 12 11 20 20 C 1.36929 * 120.63192 * 353.41563 * 19 13 12 21 21 H 1.08001 * 120.00267 * 34.66026 * 20 19 13 22 22 C 1.38816 * 119.99960 * 214.66529 * 20 19 13 23 23 N 1.31621 * 119.99844 * 6.24353 * 22 20 19 24 24 Si 1.86797 * 119.99891 * 186.25333 * 22 20 19 25 25 H 1.48503 * 109.46935 * 269.99543 * 24 22 20 26 26 H 1.48499 * 109.47506 * 29.99345 * 24 22 20 27 27 H 1.48506 * 109.47121 * 149.99731 * 24 22 20 28 28 H 1.08996 * 109.47151 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46259 * 299.99568 * 1 2 3 30 30 H 1.09001 * 109.47023 * 59.99639 * 1 2 3 31 31 H 1.09001 * 109.46983 * 240.00379 * 2 1 3 32 32 H 1.08994 * 109.47633 * 120.00603 * 2 1 3 33 33 H 1.07997 * 126.06345 * 180.02562 * 5 4 3 34 34 H 0.96996 * 120.00113 * 354.93187 * 11 9 8 35 35 H 1.09000 * 109.46874 * 60.00828 * 12 11 9 36 36 H 1.08996 * 109.47626 * 300.00485 * 12 11 9 37 37 H 1.08998 * 109.56445 * 65.67107 * 15 13 12 38 38 H 1.09005 * 109.35955 * 305.61784 * 15 13 12 39 39 H 1.08996 * 109.46418 * 301.22087 * 16 15 13 40 40 H 1.09009 * 109.44972 * 181.25135 * 16 15 13 41 41 H 1.09001 * 109.50223 * 178.68478 * 17 16 15 42 42 H 1.08998 * 109.49651 * 58.57853 * 17 16 15 43 43 H 1.08995 * 109.58968 * 294.84484 * 18 17 16 44 44 H 1.09004 * 109.70633 * 174.48762 * 18 17 16 45 45 H 0.96998 * 119.99584 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1770 2.1102 -1.0454 5 6 2.6262 3.2967 -0.7256 6 6 2.7679 3.3414 0.6646 7 17 3.3215 4.6781 1.6240 8 6 2.3742 2.0911 1.1133 9 6 2.3396 1.6239 2.5069 10 8 1.4310 1.9648 3.2403 11 7 3.3145 0.8176 2.9717 12 6 3.3415 0.4421 4.3875 13 6 4.5408 -0.4711 4.6501 14 1 4.4466 -1.3809 4.0572 15 6 4.5907 -0.8338 6.1332 16 6 5.8671 -1.6281 6.4190 17 6 7.0896 -0.7686 6.0888 18 6 7.0680 -0.4078 4.6002 19 7 5.7809 0.2278 4.2863 20 6 5.7381 1.4506 3.6716 21 1 4.9570 2.1534 3.9211 22 6 6.6986 1.7868 2.7275 23 7 7.5762 0.8888 2.3329 24 14 6.7458 3.5139 2.0174 25 1 5.8907 3.5740 0.8048 26 1 6.2410 4.4784 3.0274 27 1 8.1433 3.8623 1.6554 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5139 0.8899 33 1 2.8447 4.1004 -1.4131 34 1 3.9982 0.4861 2.3689 35 1 2.4213 -0.0840 4.6415 36 1 3.4278 1.3397 4.9999 37 1 3.7208 -1.4381 6.3906 38 1 4.5892 0.0792 6.7287 39 1 5.8798 -2.5285 5.8050 40 1 5.8930 -1.9067 7.4726 41 1 7.9984 -1.3265 6.3147 42 1 7.0646 0.1437 6.6847 43 1 7.1841 -1.3122 4.0032 44 1 7.8807 0.2837 4.3777 45 1 8.2472 1.1237 1.6730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024459473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:36 Heat of formation + Delta-G solvation = 37.822421 kcal Electronic energy + Delta-G solvation = -29207.964063 eV Core-core repulsion = 25287.977634 eV Total energy + Delta-G solvation = -3919.986429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.71640 -40.70782 -39.26979 -37.73257 -35.83044 -35.56585 -34.89680 -32.77130 -31.79521 -31.47414 -30.83706 -27.78200 -26.64656 -25.19571 -24.02404 -23.66432 -22.72091 -22.21245 -21.06171 -20.63698 -19.35569 -18.19448 -17.51279 -17.43269 -17.14366 -16.58562 -16.39913 -15.95074 -15.71726 -15.43558 -15.16081 -14.95740 -14.81878 -14.54710 -14.53296 -14.14170 -13.92580 -13.60883 -13.47184 -13.24937 -13.03531 -12.89558 -12.78920 -12.57512 -12.42208 -12.36624 -12.35052 -12.01268 -11.77619 -11.65336 -11.50441 -11.43789 -11.08423 -11.00094 -10.51394 -10.38309 -9.99768 -9.87038 -8.48606 -7.83823 -5.35061 0.32074 0.70371 1.20665 1.35165 1.41644 1.48884 1.52341 1.66818 2.26361 2.49920 3.32732 3.38079 3.48517 3.62214 3.88963 3.90027 3.98151 4.11278 4.19524 4.24464 4.27843 4.29279 4.44299 4.55982 4.64647 4.66947 4.73437 4.75139 4.88972 5.02189 5.07112 5.11050 5.16254 5.25126 5.30120 5.33498 5.48141 5.50088 5.54532 5.67567 5.75428 5.88264 6.43221 6.47655 6.76172 7.01273 7.21654 7.89103 8.42706 9.19039 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.005412 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.967447 B = 5172.401107 C = 6451.488479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 N -0.258 5.258 4 N -0.273 5.273 5 C 0.019 3.981 6 C -0.132 4.132 7 Cl -0.033 7.033 8 C -0.016 4.016 9 C 0.588 3.412 10 O -0.561 6.561 11 N -0.672 5.672 12 C 0.137 3.863 13 C 0.160 3.840 14 H 0.039 0.961 15 C -0.122 4.122 16 C -0.102 4.102 17 C -0.136 4.136 18 C 0.179 3.821 19 N -0.601 5.601 20 C -0.232 4.232 21 H 0.058 0.942 22 C -0.022 4.022 23 N -0.922 5.922 24 Si 0.913 3.087 25 H -0.263 1.263 26 H -0.282 1.282 27 H -0.307 1.307 28 H 0.114 0.886 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.130 0.870 32 H 0.104 0.896 33 H 0.220 0.780 34 H 0.413 0.587 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.002 0.998 44 H 0.048 0.952 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.541 -5.257 -1.815 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.015 4.015 3 N -0.048 5.048 4 N -0.104 5.104 5 C -0.158 4.158 6 C -0.170 4.170 7 Cl -0.005 7.005 8 C -0.147 4.147 9 C 0.371 3.629 10 O -0.440 6.440 11 N -0.321 5.321 12 C 0.013 3.987 13 C 0.054 3.946 14 H 0.056 0.944 15 C -0.162 4.162 16 C -0.139 4.139 17 C -0.176 4.176 18 C 0.053 3.947 19 N -0.326 5.326 20 C -0.362 4.362 21 H 0.075 0.925 22 C -0.219 4.219 23 N -0.567 5.567 24 Si 0.743 3.257 25 H -0.188 1.188 26 H -0.208 1.208 27 H -0.234 1.234 28 H 0.133 0.867 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.122 0.878 33 H 0.237 0.763 34 H 0.250 0.750 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.020 0.980 44 H 0.066 0.934 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.379 -5.737 -2.223 12.936 hybrid contribution 1.384 1.978 -0.009 2.414 sum -9.995 -3.759 -2.233 10.909 Atomic orbital electron populations 1.22133 0.91719 1.05335 1.02627 1.22518 0.97467 0.74606 1.06936 1.46080 1.44701 1.13060 1.00923 1.73143 1.19619 1.04130 1.13483 1.23907 1.03315 0.96337 0.92231 1.21456 1.11400 0.90543 0.93585 1.98339 1.87900 1.43207 1.71065 1.21316 1.09395 0.93766 0.90243 1.16874 0.82441 0.79108 0.84519 1.90781 1.36484 1.58292 1.58406 1.46083 1.27220 1.46865 1.11969 1.21454 0.98411 0.98522 0.80282 1.20836 0.85290 0.93223 0.95230 0.94385 1.21829 0.98664 1.00127 0.95550 1.21335 0.93865 0.97618 1.01112 1.22065 0.98320 0.99060 0.98112 1.20576 0.88426 0.94795 0.90862 1.44201 1.00358 1.19117 1.68949 1.19064 1.11537 0.91975 1.13650 0.92491 1.25484 0.99811 0.98697 0.97867 1.70061 1.19945 1.33267 1.33471 0.86096 0.76047 0.83237 0.80305 1.18802 1.20797 1.23450 0.86713 0.93451 0.91362 0.85224 0.87803 0.76336 0.74985 0.89491 0.93219 0.89566 0.92911 0.92281 0.90874 0.91984 0.93818 0.97995 0.93377 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.24 71.98 0.74 -2.06 16 2 C 0.10 2.16 6.91 86.38 0.60 2.76 16 3 N -0.26 -7.74 3.35 -334.59 -1.12 -8.86 16 4 N -0.27 -8.29 11.89 -57.06 -0.68 -8.96 16 5 C 0.02 0.60 12.04 85.22 1.03 1.62 16 6 C -0.13 -4.79 6.89 22.72 0.16 -4.63 16 7 Cl -0.03 -1.27 27.85 -2.72 -0.08 -1.34 16 8 C -0.02 -0.58 6.72 40.76 0.27 -0.31 16 9 C 0.59 22.25 6.91 86.55 0.60 22.84 16 10 O -0.56 -23.59 17.12 -4.18 -0.07 -23.66 16 11 N -0.67 -24.64 3.85 -466.74 -1.80 -26.44 16 12 C 0.14 4.68 4.44 86.38 0.38 5.07 16 13 C 0.16 5.56 3.01 44.83 0.13 5.69 16 14 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 15 C -0.12 -3.50 5.34 30.53 0.16 -3.34 16 16 C -0.10 -2.85 5.88 30.62 0.18 -2.67 16 17 C -0.14 -4.70 6.08 30.67 0.19 -4.52 16 18 C 0.18 7.88 5.23 86.36 0.45 8.33 16 19 N -0.60 -26.37 2.97 -676.01 -2.01 -28.37 16 20 C -0.23 -11.42 6.74 84.04 0.57 -10.86 16 21 H 0.06 2.94 6.02 -2.91 -0.02 2.92 16 22 C -0.02 -1.14 5.13 84.86 0.43 -0.70 16 23 N -0.92 -50.81 11.07 21.65 0.24 -50.57 16 24 Si 0.91 44.42 28.31 68.60 1.94 46.36 16 25 H -0.26 -12.35 6.98 99.48 0.69 -11.65 16 26 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.10 2.12 7.65 -2.39 -0.02 2.10 16 33 H 0.22 5.11 8.06 -2.91 -0.02 5.08 16 34 H 0.41 16.28 7.27 -92.71 -0.67 15.60 16 35 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.05 1.92 7.48 -2.39 -0.02 1.91 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.05 2.48 6.24 -2.39 -0.01 2.47 16 45 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -64.18 376.03 2.64 -61.54 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.32 Total: 23.08 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 5.89 Total: 17.23 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -5.36 Total: -123.20 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.07 Total: -23.66 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.94 Total: 46.36 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.34 kcal Total: -64.18 2.64 -61.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024459473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.364 kcal (2) G-P(sol) polarization free energy of solvation -64.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds