Wall clock time and date at job start Sat Apr 11 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86794 * 120.00480 * 2 1 4 4 H 1.48497 * 109.47164 * 270.00097 * 3 2 1 5 5 H 1.48501 * 109.47126 * 29.99964 * 3 2 1 6 6 H 1.48504 * 109.47375 * 149.99984 * 3 2 1 7 7 C 1.38815 * 119.99630 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99867 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99889 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.40780 * 32.52516 * 10 9 7 12 12 C 1.54837 * 110.56341 * 269.98710 * 10 9 7 13 13 C 1.54832 * 102.73137 * 203.00187 * 12 10 9 14 14 C 1.54146 * 104.34729 * 38.23033 * 13 12 10 15 15 H 1.08990 * 112.65495 * 99.31926 * 14 13 12 16 16 C 1.54469 * 108.79782 * 224.04340 * 14 13 12 17 17 N 1.48346 * 104.30574 * 138.54735 * 16 14 13 18 18 C 1.34772 * 128.19618 * 138.22811 * 17 16 14 19 19 O 1.21579 * 120.00152 * 3.54442 * 18 17 16 20 20 C 1.47700 * 119.99937 * 183.54376 * 18 17 16 21 21 C 1.40107 * 120.02444 * 328.73958 * 20 18 17 22 22 C 1.36427 * 120.68594 * 179.97438 * 21 20 18 23 23 C 1.39163 * 120.27707 * 0.02562 * 22 21 20 24 24 O 1.34747 * 133.25518 * 180.02562 * 23 22 21 25 25 C 1.34441 * 110.95439 * 180.02562 * 24 23 22 26 26 C 1.33961 * 110.20406 * 359.97438 * 25 24 23 27 27 C 1.40676 * 119.53770 * 0.02562 * 23 22 21 28 28 C 1.39088 * 120.20824 * 359.72624 * 27 23 22 29 29 C 1.48332 * 103.60320 * 318.48570 * 17 16 14 30 30 C 1.54044 * 104.51711 * 41.47561 * 29 17 16 31 31 H 1.09008 * 112.53259 * 96.95382 * 30 29 17 32 32 H 0.97005 * 120.00315 * 359.97438 * 1 2 3 33 33 H 0.96995 * 119.99658 * 359.97438 * 9 7 2 34 34 H 1.09005 * 110.76106 * 321.31206 * 12 10 9 35 35 H 1.08998 * 110.75942 * 84.69244 * 12 10 9 36 36 H 1.08998 * 110.45834 * 279.51555 * 13 12 10 37 37 H 1.09002 * 110.45825 * 156.94768 * 13 12 10 38 38 H 1.08994 * 110.47146 * 19.83910 * 16 14 13 39 39 H 1.09007 * 110.46108 * 257.24988 * 16 14 13 40 40 H 1.07992 * 119.65601 * 359.97438 * 21 20 18 41 41 H 1.08000 * 119.86102 * 179.97438 * 22 21 20 42 42 H 1.07999 * 124.90185 * 179.97438 * 25 24 23 43 43 H 1.07991 * 126.92805 * 179.97438 * 26 25 24 44 44 H 1.07996 * 120.32934 * 180.27662 * 28 27 23 45 45 H 1.09005 * 110.46758 * 160.21835 * 29 17 16 46 46 H 1.08996 * 110.46842 * 282.80556 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3253 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0005 11 1 2.9938 -3.5554 0.5498 12 6 2.3294 -4.1281 -1.4492 13 6 2.5290 -5.6542 -1.2802 14 6 1.4957 -6.0584 -0.2102 15 1 0.5923 -6.4899 -0.6410 16 6 2.1700 -7.0172 0.7958 17 7 1.6684 -6.5720 2.1190 18 6 1.2651 -7.3323 3.1562 19 8 1.3488 -8.5434 3.0909 20 6 0.7215 -6.6941 4.3723 21 6 1.1808 -5.4302 4.7658 22 6 0.6877 -4.8281 5.8863 23 6 -0.2814 -5.4645 6.6561 24 8 -0.9365 -5.1230 7.7830 25 6 -1.7959 -6.0890 8.1510 26 6 -1.7454 -7.1084 7.2833 27 6 -0.7493 -6.7341 6.2713 28 6 -0.2506 -7.3462 5.1262 29 6 1.7097 -5.0921 2.0279 30 6 1.1936 -4.7779 0.6109 31 1 0.1331 -4.5258 0.5989 32 1 -0.4851 0.8401 0.0004 33 1 0.3554 -2.3880 0.0005 34 1 1.4729 -3.9191 -2.0903 35 1 3.2320 -3.6618 -1.8442 36 1 3.5399 -5.8702 -0.9344 37 1 2.3278 -6.1709 -2.2186 38 1 3.2545 -6.9198 0.7470 39 1 1.8696 -8.0468 0.6010 40 1 1.9329 -4.9275 4.1760 41 1 1.0515 -3.8538 6.1775 42 1 -2.4349 -6.0491 9.0208 43 1 -2.3207 -8.0215 7.3209 44 1 -0.6116 -8.3189 4.8265 45 1 1.0564 -4.6457 2.7778 46 1 2.7311 -4.7312 2.1477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026271274.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:40 Heat of formation + Delta-G solvation = 22.577618 kcal Electronic energy + Delta-G solvation = -29154.960567 eV Core-core repulsion = 25204.453172 eV Total energy + Delta-G solvation = -3950.507395 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.67125 -40.49583 -38.80443 -37.36708 -35.19992 -33.52221 -33.03710 -31.26573 -30.74621 -29.74147 -29.29130 -28.30528 -25.19528 -24.83816 -23.32323 -22.88848 -22.47471 -21.56186 -20.36341 -19.52219 -19.03244 -17.91207 -17.68231 -17.16739 -16.47357 -16.29332 -16.06310 -15.66559 -15.19999 -14.52440 -14.41203 -14.38782 -14.06457 -13.75611 -13.55348 -13.16162 -13.13659 -13.04914 -12.87612 -12.68366 -12.29450 -12.15081 -11.81426 -11.68196 -11.31131 -11.14232 -10.82310 -10.81346 -10.68904 -10.49333 -10.36866 -10.26951 -10.23782 -10.00180 -9.88209 -9.68249 -8.92196 -8.88832 -8.67498 -8.47949 -6.99472 -5.81145 -3.10051 0.67718 0.79382 2.12756 2.52905 2.70169 2.91152 3.40325 3.45915 3.47428 3.59095 4.18158 4.35934 4.40534 4.54322 4.67509 4.75268 4.79491 4.93694 4.98756 5.08390 5.09852 5.29718 5.32445 5.42949 5.46081 5.54517 5.62054 5.64039 5.71369 5.78185 5.82250 5.94209 5.95667 5.97492 6.02993 6.07987 6.10698 6.11600 6.18960 6.27950 6.33244 6.40073 6.50262 6.64528 6.77054 6.88201 7.00438 7.54684 7.66252 8.11394 8.37203 9.48635 10.05900 10.39889 11.41229 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.003366 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.003098 B = 8317.083946 C =10758.123375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.184 3.816 11 H 0.057 0.943 12 C -0.143 4.143 13 C -0.116 4.116 14 C -0.102 4.102 15 H 0.084 0.916 16 C 0.111 3.889 17 N -0.617 5.617 18 C 0.584 3.416 19 O -0.546 6.546 20 C -0.143 4.143 21 C -0.068 4.068 22 C -0.107 4.107 23 C 0.072 3.928 24 O -0.193 6.193 25 C 0.004 3.996 26 C -0.204 4.204 27 C -0.144 4.144 28 C -0.011 4.011 29 C 0.096 3.904 30 C -0.108 4.108 31 H 0.090 0.910 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.151 0.849 41 H 0.141 0.859 42 H 0.209 0.791 43 H 0.160 0.840 44 H 0.138 0.862 45 H 0.090 0.910 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 -14.817 11.114 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.073 3.927 11 H 0.075 0.925 12 C -0.183 4.183 13 C -0.154 4.154 14 C -0.122 4.122 15 H 0.103 0.897 16 C -0.011 4.011 17 N -0.350 5.350 18 C 0.374 3.626 19 O -0.425 6.425 20 C -0.146 4.146 21 C -0.086 4.086 22 C -0.126 4.126 23 C 0.024 3.976 24 O -0.093 6.093 25 C -0.060 4.060 26 C -0.223 4.223 27 C -0.145 4.145 28 C -0.030 4.030 29 C -0.026 4.026 30 C -0.129 4.129 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.168 0.832 41 H 0.159 0.841 42 H 0.226 0.774 43 H 0.178 0.822 44 H 0.155 0.845 45 H 0.108 0.892 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.177 -15.111 11.343 18.895 hybrid contribution -0.073 0.901 -0.077 0.908 sum -0.249 -14.210 11.266 18.135 Atomic orbital electron populations 1.69653 1.05105 1.25697 1.57496 1.24727 0.95463 0.97654 1.02899 0.86234 0.78687 0.83991 0.77528 1.21764 1.21814 1.20746 1.19228 0.90961 0.84089 1.42900 0.91186 1.42452 1.05701 0.99679 1.88194 1.21140 0.93687 0.85170 0.92723 0.92474 1.23221 1.01488 0.92853 1.00767 1.22388 0.97728 0.97737 0.97572 1.22748 0.98783 0.95181 0.95441 0.89723 1.22669 0.98282 0.99239 0.80922 1.49094 1.63369 1.08260 1.14243 1.17701 0.77251 0.85819 0.81831 1.90772 1.56622 1.13522 1.81613 1.19657 1.01281 0.96216 0.97417 1.21199 0.99166 0.93168 0.95100 1.19652 0.96843 1.01410 0.94677 1.19876 0.96014 0.94416 0.87318 1.84014 1.45974 1.42557 1.36801 1.23974 0.94380 0.87039 1.00629 1.22529 1.02204 1.01666 0.95853 1.19863 1.00717 0.95768 0.98109 1.20528 0.92966 0.98669 0.90788 1.23022 1.01966 0.78758 0.98889 1.23011 1.01459 0.95317 0.93065 0.89193 0.93491 0.78179 0.91573 0.92186 0.91689 0.92202 0.90646 0.90320 0.83183 0.84134 0.77444 0.82235 0.84454 0.89230 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.11 13.06 55.49 0.72 -26.38 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.24 -6.28 9.96 -15.06 -0.15 -6.43 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.72 -16.62 5.21 -51.91 -0.27 -16.89 16 10 C 0.18 3.24 3.05 -66.36 -0.20 3.04 16 11 H 0.06 1.01 7.13 -51.93 -0.37 0.64 16 12 C -0.14 -2.29 6.57 -24.80 -0.16 -2.45 16 13 C -0.12 -1.44 6.36 -25.17 -0.16 -1.60 16 14 C -0.10 -1.30 3.95 -88.14 -0.35 -1.65 16 15 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 16 C 0.11 1.38 6.58 -2.25 -0.01 1.37 16 17 N -0.62 -8.46 3.32 -170.31 -0.56 -9.03 16 18 C 0.58 8.82 7.65 -12.40 -0.09 8.73 16 19 O -0.55 -9.71 17.04 5.30 0.09 -9.62 16 20 C -0.14 -1.93 5.69 -104.96 -0.60 -2.53 16 21 C -0.07 -0.83 7.77 -39.53 -0.31 -1.14 16 22 C -0.11 -1.27 9.99 -39.89 -0.40 -1.67 16 23 C 0.07 0.90 7.42 -38.32 -0.28 0.61 16 24 O -0.19 -2.20 10.57 4.11 0.04 -2.15 16 25 C 0.00 0.04 11.95 29.23 0.35 0.39 16 26 C -0.20 -1.89 11.15 -37.60 -0.42 -2.31 16 27 C -0.14 -1.75 6.39 -105.18 -0.67 -2.42 16 28 C -0.01 -0.14 9.65 -38.89 -0.38 -0.51 16 29 C 0.10 1.28 4.82 -2.49 -0.01 1.27 16 30 C -0.11 -1.61 3.63 -88.37 -0.32 -1.93 16 31 H 0.09 1.47 7.80 -51.92 -0.40 1.07 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.38 9.57 7.60 -40.82 -0.31 9.26 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.74 7.18 -51.93 -0.37 0.36 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.86 7.20 -51.93 -0.37 0.49 16 39 H 0.08 1.00 7.91 -51.93 -0.41 0.59 16 40 H 0.15 1.66 5.41 -52.49 -0.28 1.38 16 41 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 42 H 0.21 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.14 1.66 7.94 -52.49 -0.42 1.24 16 45 H 0.09 1.21 5.33 -51.93 -0.28 0.93 16 46 H 0.08 1.04 7.17 -51.93 -0.37 0.66 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -32.08 371.70 -9.76 -41.84 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.10 Total: 9.68 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -4.27 Total: -9.63 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.11 Total: -52.31 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.13 Total: -11.78 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.08 -9.76 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026271274.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.421 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds