Wall clock time and date at job start Sat Apr 11 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00131 * 2 1 4 4 H 1.48504 * 109.47208 * 239.99730 * 3 2 1 5 5 H 1.48496 * 109.47435 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47029 * 120.00278 * 3 2 1 7 7 C 1.38812 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00237 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00159 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.47272 * 34.29631 * 10 9 7 12 12 C 1.56009 * 110.64563 * 271.57534 * 10 9 7 13 13 C 1.55455 * 105.84432 * 248.60869 * 12 10 9 14 14 C 1.51561 * 102.22491 * 24.94109 * 13 12 10 15 15 H 1.08999 * 111.11816 * 71.93751 * 14 13 12 16 16 C 1.51521 * 123.80521 * 208.29032 * 14 13 12 17 17 N 1.49624 * 102.49518 * 151.79381 * 16 14 13 18 18 C 1.34776 * 126.07082 * 154.37414 * 17 16 14 19 19 O 1.21575 * 120.00047 * 176.36811 * 18 17 16 20 20 C 1.47699 * 120.00113 * 356.36331 * 18 17 16 21 21 C 1.40099 * 120.02780 * 206.64360 * 20 18 17 22 22 C 1.36428 * 120.68986 * 179.74413 * 21 20 18 23 23 C 1.39166 * 120.27354 * 0.54554 * 22 21 20 24 24 O 1.34745 * 133.25661 * 179.75524 * 23 22 21 25 25 C 1.34441 * 110.95510 * 179.97438 * 24 23 22 26 26 C 1.33955 * 110.20062 * 359.97438 * 25 24 23 27 27 C 1.40672 * 119.53904 * 359.71618 * 23 22 21 28 28 C 1.39095 * 120.20493 * 0.02562 * 27 23 22 29 29 C 1.49282 * 107.85684 * 334.35198 * 17 16 14 30 30 C 1.49703 * 110.52862 * 156.94075 * 10 9 7 31 31 H 1.08993 * 108.55534 * 196.74292 * 30 10 9 32 32 H 0.96999 * 119.99209 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99835 * 359.97438 * 9 7 2 34 34 H 1.08996 * 110.18780 * 7.35434 * 12 10 9 35 35 H 1.09006 * 110.18833 * 129.20124 * 12 10 9 36 36 H 1.09004 * 110.36049 * 266.85385 * 13 12 10 37 37 H 1.09004 * 111.17571 * 143.39241 * 13 12 10 38 38 H 1.08998 * 110.80046 * 270.04948 * 16 14 13 39 39 H 1.09001 * 110.79844 * 33.54265 * 16 14 13 40 40 H 1.08000 * 119.65631 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.86483 * 180.23929 * 22 21 20 42 42 H 1.08002 * 124.90205 * 179.97438 * 25 24 23 43 43 H 1.07998 * 126.92764 * 179.97438 * 26 25 24 44 44 H 1.07992 * 120.32488 * 180.02562 * 28 27 23 45 45 H 1.09000 * 110.40173 * 234.81465 * 29 17 16 46 46 H 1.08998 * 110.39976 * 112.40976 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9792 -3.5652 0.5759 12 6 2.3677 -4.1131 -1.4588 13 6 1.4971 -5.3779 -1.7019 14 6 0.3623 -5.1804 -0.7169 15 1 -0.3051 -4.3821 -1.0416 16 6 -0.4140 -6.3185 -0.0860 17 7 -0.8477 -5.7300 1.2195 18 6 -1.9253 -6.1017 1.9386 19 8 -2.1389 -5.5917 3.0213 20 6 -2.8468 -7.1284 1.4111 21 6 -4.1894 -7.1374 1.8112 22 6 -5.0535 -8.0764 1.3285 23 6 -4.6076 -9.0480 0.4375 24 8 -5.2141 -10.0773 -0.1857 25 6 -4.3466 -10.7455 -0.9658 26 6 -3.1318 -10.1860 -0.8913 27 6 -3.2604 -9.0521 0.0329 28 6 -2.3803 -8.0918 0.5206 29 6 0.1256 -4.6585 1.5844 30 6 1.2033 -4.7563 0.5497 31 1 1.8460 -5.5957 0.8149 32 1 -0.4849 0.8401 -0.0004 33 1 0.3555 -2.3880 0.0005 34 1 2.0896 -3.3305 -2.1647 35 1 3.4259 -4.3541 -1.5610 36 1 2.0640 -6.2791 -1.4681 37 1 1.1240 -5.4083 -2.7256 38 1 -1.2769 -6.5838 -0.6968 39 1 0.2292 -7.1838 0.0740 40 1 -4.5452 -6.3906 2.5054 41 1 -6.0867 -8.0686 1.6429 42 1 -4.5936 -11.6088 -1.5659 43 1 -2.2378 -10.5051 -1.4063 44 1 -1.3457 -8.0928 0.2110 45 1 0.5355 -4.8397 2.5780 46 1 -0.3532 -3.6801 1.5427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026271276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:45 Heat of formation + Delta-G solvation = 41.046576 kcal Electronic energy + Delta-G solvation = -29245.837420 eV Core-core repulsion = 25296.130900 eV Total energy + Delta-G solvation = -3949.706520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.74979 -40.68481 -39.03292 -37.34494 -35.32396 -33.36900 -33.13130 -31.41446 -30.81773 -29.65827 -29.04285 -28.52451 -25.58027 -24.68655 -23.33111 -23.10975 -22.33300 -21.68255 -20.09058 -19.65692 -18.85529 -17.88897 -17.47301 -17.34992 -16.77360 -16.42660 -16.10367 -15.19946 -15.02575 -14.84680 -14.51181 -14.25714 -14.05611 -13.69694 -13.52223 -13.42119 -13.34818 -12.97915 -12.77746 -12.61830 -12.42707 -12.26969 -11.87956 -11.45836 -11.36484 -11.05729 -10.96523 -10.82062 -10.69543 -10.55486 -10.48021 -10.28029 -10.11598 -9.83778 -9.63970 -9.57756 -8.91148 -8.90414 -8.56994 -8.51136 -6.97686 -5.76999 -3.06352 0.58790 0.76470 2.05803 2.45395 2.77376 2.91440 3.43975 3.48785 3.49792 3.59328 4.04769 4.17976 4.29779 4.48611 4.58887 4.71372 4.88941 4.93085 5.00812 5.06095 5.13625 5.25849 5.26508 5.36145 5.43804 5.53684 5.56691 5.61583 5.76367 5.81661 5.82582 5.86274 5.92208 5.99339 6.03232 6.05955 6.16369 6.23562 6.26269 6.30305 6.36884 6.44851 6.53246 6.64788 6.79853 6.80872 7.03751 7.57648 7.70097 8.22616 8.41163 9.52453 10.08790 10.43326 11.45219 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.002631 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.569044 B =10640.268045 C =11390.848916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.718 5.718 10 C 0.197 3.803 11 H 0.056 0.944 12 C -0.146 4.146 13 C -0.097 4.097 14 C -0.126 4.126 15 H 0.095 0.905 16 C 0.109 3.891 17 N -0.616 5.616 18 C 0.574 3.426 19 O -0.536 6.536 20 C -0.137 4.137 21 C -0.039 4.039 22 C -0.113 4.113 23 C 0.069 3.931 24 O -0.195 6.195 25 C 0.003 3.997 26 C -0.203 4.203 27 C -0.143 4.143 28 C -0.046 4.046 29 C 0.132 3.868 30 C -0.120 4.120 31 H 0.068 0.932 32 H 0.256 0.744 33 H 0.384 0.616 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.209 0.791 43 H 0.161 0.839 44 H 0.146 0.854 45 H 0.071 0.929 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.965 -23.721 -3.462 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.359 5.359 10 C 0.086 3.914 11 H 0.074 0.926 12 C -0.187 4.187 13 C -0.135 4.135 14 C -0.145 4.145 15 H 0.113 0.887 16 C -0.013 4.013 17 N -0.350 5.350 18 C 0.363 3.637 19 O -0.414 6.414 20 C -0.140 4.140 21 C -0.058 4.058 22 C -0.131 4.131 23 C 0.021 3.979 24 O -0.096 6.096 25 C -0.062 4.062 26 C -0.222 4.222 27 C -0.144 4.144 28 C -0.064 4.064 29 C 0.012 3.988 30 C -0.140 4.140 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.219 0.781 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.225 0.775 43 H 0.178 0.822 44 H 0.164 0.836 45 H 0.089 0.911 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.314 -23.356 -2.756 24.351 hybrid contribution 0.342 0.807 -0.268 0.917 sum -5.973 -22.549 -3.025 23.522 Atomic orbital electron populations 1.69648 1.05093 1.25832 1.57357 1.24741 0.95475 0.97680 1.02870 0.86290 0.78528 0.83671 0.77800 1.21329 1.21766 1.21273 1.19190 0.90972 0.84086 1.43047 0.91176 1.42419 1.05711 0.99556 1.88203 1.20019 0.93766 0.85207 0.92445 0.92624 1.23704 0.97933 0.96396 1.00661 1.21653 0.95270 0.98746 0.97807 1.22650 0.97231 0.98072 0.96580 0.88719 1.22109 0.98757 0.96026 0.84387 1.49706 1.25886 1.37258 1.22133 1.17738 0.79873 0.81957 0.84126 1.90804 1.73603 1.56318 1.20718 1.19795 0.95001 0.98190 1.01051 1.20728 0.91175 0.96937 0.96932 1.19601 1.01210 0.93930 0.98397 1.19881 0.91118 0.90185 0.96748 1.83999 1.38682 1.36416 1.50456 1.23967 0.88124 0.98219 0.95857 1.22544 0.99269 0.97282 1.03080 1.19878 0.94021 0.98777 1.01713 1.21284 1.00148 0.91668 0.93340 1.20992 0.88974 0.91149 0.97703 1.22056 0.96455 1.00895 0.94627 0.91354 0.93425 0.78103 0.90595 0.92771 0.92092 0.92000 0.89966 0.90833 0.83508 0.84389 0.77475 0.82174 0.83618 0.91056 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.48 9.97 -15.06 -0.15 -6.63 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -17.03 4.89 -53.45 -0.26 -17.29 16 10 C 0.20 3.62 3.45 -67.95 -0.23 3.39 16 11 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 12 C -0.15 -2.32 6.71 -23.82 -0.16 -2.48 16 13 C -0.10 -1.21 6.58 -26.16 -0.17 -1.39 16 14 C -0.13 -1.75 3.09 -89.45 -0.28 -2.02 16 15 H 0.09 1.58 7.93 -51.93 -0.41 1.17 16 16 C 0.11 1.29 4.73 -3.05 -0.01 1.28 16 17 N -0.62 -9.35 3.43 -172.73 -0.59 -9.94 16 18 C 0.57 9.37 7.66 -12.40 -0.09 9.28 16 19 O -0.54 -10.64 16.99 5.30 0.09 -10.55 16 20 C -0.14 -1.83 5.73 -104.96 -0.60 -2.43 16 21 C -0.04 -0.47 9.51 -39.54 -0.38 -0.85 16 22 C -0.11 -1.19 9.99 -39.89 -0.40 -1.59 16 23 C 0.07 0.76 7.42 -38.32 -0.28 0.48 16 24 O -0.19 -1.93 10.57 4.11 0.04 -1.88 16 25 C 0.00 0.02 11.95 29.23 0.35 0.37 16 26 C -0.20 -1.61 11.14 -37.61 -0.42 -2.03 16 27 C -0.14 -1.54 6.39 -105.18 -0.67 -2.21 16 28 C -0.05 -0.52 8.00 -38.89 -0.31 -0.83 16 29 C 0.13 2.26 6.67 -4.12 -0.03 2.23 16 30 C -0.12 -1.86 2.26 -91.22 -0.21 -2.07 16 31 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.38 9.83 6.70 -40.82 -0.27 9.55 16 34 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.89 6.17 -51.93 -0.32 0.57 16 39 H 0.07 0.71 7.45 -51.93 -0.39 0.33 16 40 H 0.15 1.71 7.85 -52.49 -0.41 1.29 16 41 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.21 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.15 1.40 4.60 -52.49 -0.24 1.16 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.09 1.75 7.17 -51.93 -0.37 1.38 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -33.04 371.41 -9.74 -42.78 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -6.17 Total: 9.16 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -4.14 Total: -7.93 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.13 Total: -54.34 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.13 Total: -12.44 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.04 -9.74 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026271276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.823 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds