Wall clock time and date at job start Sat Apr 11 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00131 * 2 1 4 4 H 1.48504 * 109.47208 * 239.99730 * 3 2 1 5 5 H 1.48496 * 109.47435 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47029 * 120.00278 * 3 2 1 7 7 C 1.38812 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00237 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00091 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00159 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.47272 * 34.29631 * 10 9 7 12 12 C 1.56009 * 110.64563 * 271.57534 * 10 9 7 13 13 C 1.55455 * 105.84432 * 248.60869 * 12 10 9 14 14 C 1.51561 * 102.22491 * 24.94109 * 13 12 10 15 15 H 1.08999 * 111.11816 * 71.93751 * 14 13 12 16 16 C 1.51521 * 123.80521 * 208.29032 * 14 13 12 17 17 N 1.49624 * 102.49518 * 151.79381 * 16 14 13 18 18 C 1.34776 * 126.07082 * 154.37414 * 17 16 14 19 19 O 1.21575 * 120.00047 * 176.36811 * 18 17 16 20 20 C 1.47699 * 120.00113 * 356.36331 * 18 17 16 21 21 C 1.40099 * 120.02780 * 206.64360 * 20 18 17 22 22 C 1.36428 * 120.68986 * 179.74413 * 21 20 18 23 23 C 1.39166 * 120.27354 * 0.54554 * 22 21 20 24 24 O 1.34745 * 133.25661 * 179.75524 * 23 22 21 25 25 C 1.34441 * 110.95510 * 179.97438 * 24 23 22 26 26 C 1.33955 * 110.20062 * 359.97438 * 25 24 23 27 27 C 1.40672 * 119.53904 * 359.71618 * 23 22 21 28 28 C 1.39095 * 120.20493 * 0.02562 * 27 23 22 29 29 C 1.49282 * 107.85684 * 334.35198 * 17 16 14 30 30 C 1.49703 * 110.52862 * 156.94075 * 10 9 7 31 31 H 1.08993 * 108.55534 * 196.74292 * 30 10 9 32 32 H 0.96999 * 119.99209 * 0.02562 * 1 2 3 33 33 H 0.97001 * 119.99835 * 359.97438 * 9 7 2 34 34 H 1.08996 * 110.18780 * 7.35434 * 12 10 9 35 35 H 1.09006 * 110.18833 * 129.20124 * 12 10 9 36 36 H 1.09004 * 110.36049 * 266.85385 * 13 12 10 37 37 H 1.09004 * 111.17571 * 143.39241 * 13 12 10 38 38 H 1.08998 * 110.80046 * 270.04948 * 16 14 13 39 39 H 1.09001 * 110.79844 * 33.54265 * 16 14 13 40 40 H 1.08000 * 119.65631 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.86483 * 180.23929 * 22 21 20 42 42 H 1.08002 * 124.90205 * 179.97438 * 25 24 23 43 43 H 1.07998 * 126.92764 * 179.97438 * 26 25 24 44 44 H 1.07992 * 120.32488 * 180.02562 * 28 27 23 45 45 H 1.09000 * 110.40173 * 234.81465 * 29 17 16 46 46 H 1.08998 * 110.39976 * 112.40976 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9792 -3.5652 0.5759 12 6 2.3677 -4.1131 -1.4588 13 6 1.4971 -5.3779 -1.7019 14 6 0.3623 -5.1804 -0.7169 15 1 -0.3051 -4.3821 -1.0416 16 6 -0.4140 -6.3185 -0.0860 17 7 -0.8477 -5.7300 1.2195 18 6 -1.9253 -6.1017 1.9386 19 8 -2.1389 -5.5917 3.0213 20 6 -2.8468 -7.1284 1.4111 21 6 -4.1894 -7.1374 1.8112 22 6 -5.0535 -8.0764 1.3285 23 6 -4.6076 -9.0480 0.4375 24 8 -5.2141 -10.0773 -0.1857 25 6 -4.3466 -10.7455 -0.9658 26 6 -3.1318 -10.1860 -0.8913 27 6 -3.2604 -9.0521 0.0329 28 6 -2.3803 -8.0918 0.5206 29 6 0.1256 -4.6585 1.5844 30 6 1.2033 -4.7563 0.5497 31 1 1.8460 -5.5957 0.8149 32 1 -0.4849 0.8401 -0.0004 33 1 0.3555 -2.3880 0.0005 34 1 2.0896 -3.3305 -2.1647 35 1 3.4259 -4.3541 -1.5610 36 1 2.0640 -6.2791 -1.4681 37 1 1.1240 -5.4083 -2.7256 38 1 -1.2769 -6.5838 -0.6968 39 1 0.2292 -7.1838 0.0740 40 1 -4.5452 -6.3906 2.5054 41 1 -6.0867 -8.0686 1.6429 42 1 -4.5936 -11.6088 -1.5659 43 1 -2.2378 -10.5051 -1.4063 44 1 -1.3457 -8.0928 0.2110 45 1 0.5355 -4.8397 2.5780 46 1 -0.3532 -3.6801 1.5427 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026271276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:44 Heat of formation + Delta-G solvation = 20.588293 kcal Electronic energy + Delta-G solvation = -29246.724558 eV Core-core repulsion = 25296.130900 eV Total energy + Delta-G solvation = -3950.593658 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.45689 -41.90249 -40.21390 -38.35655 -36.78718 -35.09882 -33.85815 -32.61190 -32.38161 -30.42983 -30.22331 -29.89686 -27.06139 -25.70319 -25.15969 -24.05571 -23.34546 -22.37467 -21.17414 -20.76983 -20.27293 -19.40965 -18.66763 -18.31697 -17.72764 -17.42711 -17.09392 -16.69350 -16.33103 -16.01843 -15.95462 -15.43663 -15.29540 -15.04021 -14.73503 -14.55328 -14.23866 -14.09601 -13.82202 -13.62511 -13.54413 -13.28821 -13.25280 -13.04148 -12.83799 -12.59117 -12.40067 -12.26606 -12.06358 -11.98802 -11.87955 -11.49090 -11.36286 -11.26162 -11.08738 -10.92316 -10.85798 -9.92372 -9.65560 -9.26912 -8.96930 -7.92281 -5.19780 -0.26316 -0.06152 1.43632 1.46337 1.49166 1.55001 1.61877 1.75060 1.82203 2.57308 2.65133 2.96052 3.29604 3.41545 3.48383 3.65855 3.73428 3.89860 4.00209 4.06063 4.15329 4.20261 4.25731 4.27799 4.39365 4.40066 4.48764 4.60080 4.61475 4.68240 4.71912 4.84051 4.86179 4.92176 4.96873 5.03195 5.07446 5.10695 5.17370 5.24381 5.27038 5.39361 5.44575 5.46147 5.47478 5.54498 5.70442 6.10629 6.29880 6.37711 6.97424 7.35672 8.14207 8.35165 9.31084 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.002631 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.569044 B =10640.268045 C =11390.848916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.080 4.080 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.301 1.301 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.078 0.922 9 N -0.731 5.731 10 C 0.184 3.816 11 H 0.052 0.948 12 C -0.139 4.139 13 C -0.081 4.081 14 C -0.113 4.113 15 H 0.055 0.945 16 C 0.113 3.887 17 N -0.616 5.616 18 C 0.568 3.432 19 O -0.587 6.587 20 C -0.158 4.158 21 C -0.057 4.057 22 C -0.108 4.108 23 C 0.052 3.948 24 O -0.204 6.204 25 C 0.013 3.987 26 C -0.210 4.210 27 C -0.153 4.153 28 C -0.038 4.038 29 C 0.136 3.864 30 C -0.121 4.121 31 H 0.104 0.896 32 H 0.248 0.752 33 H 0.370 0.630 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.138 0.862 41 H 0.159 0.841 42 H 0.254 0.746 43 H 0.190 0.810 44 H 0.166 0.834 45 H 0.065 0.935 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.626 -27.803 -5.663 28.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.228 1.228 6 H -0.206 1.206 7 C -0.365 4.365 8 H 0.096 0.904 9 N -0.371 5.371 10 C 0.075 3.925 11 H 0.070 0.930 12 C -0.179 4.179 13 C -0.119 4.119 14 C -0.133 4.133 15 H 0.073 0.927 16 C -0.006 4.006 17 N -0.348 5.348 18 C 0.359 3.641 19 O -0.469 6.469 20 C -0.161 4.161 21 C -0.076 4.076 22 C -0.127 4.127 23 C 0.004 3.996 24 O -0.105 6.105 25 C -0.051 4.051 26 C -0.229 4.229 27 C -0.154 4.154 28 C -0.057 4.057 29 C 0.014 3.986 30 C -0.141 4.141 31 H 0.122 0.878 32 H 0.056 0.944 33 H 0.203 0.797 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.133 0.867 40 H 0.156 0.844 41 H 0.176 0.824 42 H 0.270 0.730 43 H 0.207 0.793 44 H 0.184 0.816 45 H 0.083 0.917 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.915 -27.500 -5.000 28.380 hybrid contribution -0.090 1.942 0.390 1.983 sum -5.005 -25.558 -4.610 26.448 Atomic orbital electron populations 1.69828 1.06688 1.25814 1.60056 1.25530 0.96238 1.01055 1.04326 0.85264 0.77139 0.79522 0.78172 1.20193 1.22755 1.20611 1.19619 0.91474 0.85264 1.40170 0.90376 1.42618 1.05274 1.00889 1.88329 1.20372 0.93639 0.83915 0.94616 0.93000 1.23502 1.00088 0.97202 0.97148 1.21613 0.93923 0.98272 0.98071 1.22570 0.96914 0.97761 0.96033 0.92657 1.22375 0.99725 0.96103 0.82447 1.49764 1.25261 1.36574 1.23213 1.18315 0.80060 0.82097 0.83596 1.90760 1.74743 1.58394 1.23032 1.19622 0.94819 0.98654 1.03014 1.20724 0.91372 0.97777 0.97714 1.19737 1.01853 0.93211 0.97853 1.20083 0.91744 0.90684 0.97061 1.84020 1.39612 1.36159 1.50737 1.24933 0.87402 0.98283 0.94449 1.22920 1.00877 0.96242 1.02855 1.20246 0.93692 0.99389 1.02080 1.21380 1.01117 0.90865 0.92303 1.20766 0.89679 0.89807 0.98367 1.21924 0.96454 1.00726 0.94998 0.87754 0.94357 0.79731 0.93928 0.90468 0.88102 0.90620 0.88440 0.86684 0.84400 0.82372 0.73034 0.79271 0.81644 0.91651 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.06 13.06 21.65 0.28 -60.78 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 3 Si 0.97 46.88 29.55 68.60 2.03 48.90 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 7 C -0.23 -12.82 9.97 84.03 0.84 -11.99 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.73 -36.07 4.89 -323.01 -1.58 -37.65 16 10 C 0.18 6.70 3.45 44.98 0.16 6.86 16 11 H 0.05 1.91 8.10 -2.39 -0.02 1.89 16 12 C -0.14 -4.14 6.71 32.48 0.22 -3.93 16 13 C -0.08 -1.72 6.58 30.97 0.20 -1.51 16 14 C -0.11 -2.94 3.09 -10.03 -0.03 -2.97 16 15 H 0.05 1.89 7.93 -2.39 -0.02 1.87 16 16 C 0.11 2.38 4.73 85.29 0.40 2.79 16 17 N -0.62 -18.83 3.43 -818.67 -2.80 -21.64 16 18 C 0.57 19.35 7.66 86.74 0.66 20.02 16 19 O -0.59 -25.11 16.99 -3.95 -0.07 -25.17 16 20 C -0.16 -4.25 5.73 -20.09 -0.12 -4.37 16 21 C -0.06 -1.43 9.51 22.30 0.21 -1.22 16 22 C -0.11 -2.23 9.99 22.07 0.22 -2.01 16 23 C 0.05 1.07 7.42 23.09 0.17 1.24 16 24 O -0.20 -3.47 10.57 -8.20 -0.09 -3.55 16 25 C 0.01 0.12 11.95 66.84 0.80 0.92 16 26 C -0.21 -2.43 11.14 23.55 0.26 -2.16 16 27 C -0.15 -2.89 6.39 -20.23 -0.13 -3.02 16 28 C -0.04 -0.79 8.00 22.72 0.18 -0.61 16 29 C 0.14 4.83 6.67 84.79 0.57 5.40 16 30 C -0.12 -3.65 2.26 -11.18 -0.03 -3.67 16 31 H 0.10 2.46 8.00 -2.39 -0.02 2.44 16 32 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.37 20.21 6.70 -92.71 -0.62 19.59 16 34 H 0.04 1.56 7.99 -2.39 -0.02 1.54 16 35 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.10 1.82 6.17 -2.39 -0.01 1.81 16 39 H 0.12 1.58 7.45 -2.39 -0.02 1.56 16 40 H 0.14 3.56 7.85 -2.91 -0.02 3.54 16 41 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 42 H 0.25 -0.18 8.06 -2.91 -0.02 -0.20 16 43 H 0.19 0.98 8.06 -2.91 -0.02 0.95 16 44 H 0.17 2.54 4.60 -2.91 -0.01 2.53 16 45 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 46 H 0.04 1.71 7.17 -2.39 -0.02 1.69 16 Total: -1.00 -78.72 371.41 3.23 -75.50 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.40 Total: 28.79 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 5.06 Total: -4.40 kcal Atomic # 7 Polarization: -115.96 SS G_CDS: -4.10 Total: -120.06 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.15 Total: -28.73 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.90 kcal Total: -78.72 3.23 -75.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026271276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.086 kcal (2) G-P(sol) polarization free energy of solvation -78.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds