Wall clock time and date at job start Sat Apr 11 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34946 * 126.02309 * 2 1 4 4 C 1.35306 * 107.76545 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.04774 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46869 * 100.00124 * 5 4 3 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99928 * 179.72354 * 6 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 8 6 5 10 10 C 1.52997 * 109.47288 * 275.00460 * 9 8 6 11 11 C 1.53000 * 109.47350 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.46939 * 59.99752 * 11 10 9 13 13 N 1.46504 * 109.46900 * 180.02562 * 12 11 10 14 14 C 1.36936 * 120.00215 * 274.99841 * 13 12 11 15 15 H 1.08004 * 119.99897 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00139 * 180.02562 * 14 13 12 17 17 N 1.31611 * 120.00069 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99859 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46787 * 90.00320 * 18 16 14 20 20 H 1.48503 * 109.47294 * 209.99958 * 18 16 14 21 21 H 1.48499 * 109.47372 * 330.00354 * 18 16 14 22 22 C 1.52997 * 109.47302 * 300.00277 * 12 11 10 23 23 C 1.52995 * 109.47319 * 59.99629 * 22 12 11 24 24 C 1.39977 * 107.90688 * 0.24441 * 4 3 2 25 25 Cl 1.73595 * 125.91079 * 179.75657 * 24 4 3 26 26 N 1.30892 * 108.17445 * 359.58994 * 24 4 3 27 27 H 1.09004 * 109.46780 * 90.00471 * 1 2 3 28 28 H 1.09000 * 109.46990 * 209.99805 * 1 2 3 29 29 H 1.08994 * 109.47128 * 330.00310 * 1 2 3 30 30 H 1.08006 * 126.11827 * 0.05533 * 3 2 1 31 31 H 1.09004 * 109.47210 * 340.00417 * 5 4 3 32 32 H 1.08994 * 109.47551 * 220.00070 * 5 4 3 33 33 H 0.97000 * 120.00317 * 0.28382 * 8 6 5 34 34 H 1.09001 * 109.46948 * 35.00281 * 9 8 6 35 35 H 1.08993 * 109.47268 * 299.99834 * 10 9 8 36 36 H 1.09006 * 109.47495 * 60.00048 * 10 9 8 37 37 H 1.09001 * 109.47157 * 299.99986 * 11 10 9 38 38 H 1.09000 * 109.47626 * 179.97438 * 11 10 9 39 39 H 1.08993 * 109.46833 * 60.00389 * 12 11 10 40 40 H 0.97007 * 120.00036 * 95.00375 * 13 12 11 41 41 H 0.96999 * 120.00174 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.46979 * 299.99879 * 22 12 11 43 43 H 1.09000 * 109.47470 * 180.02562 * 22 12 11 44 44 H 1.09000 * 109.47384 * 179.97438 * 23 22 12 45 45 H 1.09007 * 109.46796 * 59.99739 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2587 1.0914 0.0000 4 6 3.5436 0.6675 -0.0006 5 6 4.7675 1.5468 -0.0013 6 6 5.3201 1.6397 1.3976 7 8 4.7742 1.0496 2.3058 8 7 6.4245 2.3736 1.6386 9 6 6.9652 2.4590 2.9974 10 6 6.2404 3.5657 3.7661 11 6 6.8047 3.6545 5.1855 12 6 8.2997 3.9734 5.1209 13 7 8.8402 4.0578 6.4800 14 6 8.7538 5.2319 7.1795 15 1 8.2869 6.0956 6.7294 16 6 9.2663 5.3121 8.4670 17 7 9.1829 6.4403 9.1395 18 14 10.0732 3.8181 9.2457 19 1 11.5252 3.8212 8.9344 20 1 9.8825 3.8634 10.7178 21 1 9.4534 2.5821 8.7041 22 6 9.0245 2.8668 4.3522 23 6 8.4602 2.7779 2.9329 24 6 3.5350 -0.7322 -0.0066 25 17 4.9348 -1.7590 -0.0157 26 7 2.2890 -1.1329 -0.0007 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.9274 2.1194 0.0008 31 1 4.4989 2.5431 -0.3528 32 1 5.5216 1.1194 -0.6622 33 1 6.8614 2.8454 0.9123 34 1 6.8189 1.5068 3.5072 35 1 6.3867 4.5179 3.2564 36 1 5.1754 3.3383 3.8125 37 1 6.6580 2.7022 5.6951 38 1 6.2887 4.4432 5.7330 39 1 8.4464 4.9257 4.6114 40 1 9.2592 3.2820 6.8844 41 1 9.5407 6.4963 10.0393 42 1 8.8779 1.9144 4.8618 43 1 10.0897 3.0937 4.3066 44 1 8.9769 1.9898 2.3851 45 1 8.6069 3.7303 2.4234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026558213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:53 Heat of formation + Delta-G solvation = 38.177882 kcal Electronic energy + Delta-G solvation = -26768.260115 eV Core-core repulsion = 22848.289100 eV Total energy + Delta-G solvation = -3919.971015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70703 -39.86047 -37.99303 -36.98229 -34.92756 -33.89059 -33.04560 -32.17975 -30.92786 -30.44499 -28.94563 -27.57759 -25.97039 -23.32466 -22.44196 -21.65292 -21.48397 -20.71263 -20.26868 -19.56578 -17.65713 -17.37006 -16.98331 -16.16234 -15.88277 -15.44707 -15.24839 -14.99989 -14.41474 -14.04158 -13.94095 -13.84608 -13.72172 -13.45868 -13.32630 -12.92990 -12.90852 -12.59760 -12.25774 -12.10095 -11.94157 -11.91566 -11.78217 -11.69601 -11.09303 -10.85035 -10.84849 -10.81863 -10.62575 -10.22580 -10.13220 -9.83231 -9.78179 -9.58915 -9.54255 -8.93574 -8.84879 -8.79078 -7.22714 -5.74088 -3.08971 1.20628 1.38829 2.13193 2.52549 2.67214 3.26223 3.40502 3.44024 3.48160 4.08795 4.37082 4.59889 4.62311 4.67717 4.80290 4.81779 4.94882 4.96752 5.03879 5.14478 5.17623 5.23978 5.49886 5.53005 5.58091 5.60126 5.65629 5.80027 5.83192 5.85830 5.97131 6.16019 6.21874 6.26486 6.39336 6.48849 6.50294 6.62097 6.67866 6.93054 7.08514 7.08990 7.52284 8.02925 8.27436 8.45404 9.24424 9.97321 10.17481 11.44402 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020338 B = 0.002112 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.395724 B =13251.671443 C =13632.611238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.363 5.363 3 C 0.079 3.921 4 C -0.204 4.204 5 C -0.064 4.064 6 C 0.511 3.489 7 O -0.527 6.527 8 N -0.728 5.728 9 C 0.145 3.855 10 C -0.122 4.122 11 C -0.133 4.133 12 C 0.182 3.818 13 N -0.750 5.750 14 C -0.240 4.240 15 H 0.090 0.910 16 C 0.002 3.998 17 N -0.936 5.936 18 Si 0.884 3.116 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.277 1.277 22 C -0.124 4.124 23 C -0.118 4.118 24 C 0.142 3.858 25 Cl 0.006 6.994 26 N -0.283 5.283 27 H 0.078 0.922 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.183 0.817 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.397 0.603 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.360 0.640 41 H 0.259 0.741 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.865 -11.555 -26.706 32.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.146 5.146 3 C -0.068 4.068 4 C -0.217 4.217 5 C -0.105 4.105 6 C 0.296 3.704 7 O -0.402 6.402 8 N -0.380 5.380 9 C 0.042 3.958 10 C -0.162 4.162 11 C -0.173 4.173 12 C 0.073 3.927 13 N -0.392 5.392 14 C -0.370 4.370 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.584 5.584 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.163 4.163 23 C -0.157 4.157 24 C -0.050 4.050 25 Cl 0.034 6.966 26 N -0.108 5.108 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.200 0.800 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.231 0.769 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.193 0.807 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.129 -12.841 -25.945 32.664 hybrid contribution 1.316 -0.147 0.450 1.398 sum -13.814 -12.988 -25.495 31.772 Atomic orbital electron populations 1.21962 0.73123 1.05088 1.03666 1.48182 1.06644 1.03051 1.56740 1.22307 0.89814 0.93808 1.00823 1.19175 0.94281 0.91463 1.16742 1.19938 0.95017 1.00267 0.95296 1.20564 0.80396 0.78635 0.90797 1.90734 1.58745 1.44566 1.46202 1.46144 1.29114 1.51526 1.11177 1.21066 0.92821 1.00231 0.81721 1.21876 0.99586 0.97795 0.96920 1.22184 0.98977 1.01947 0.94230 1.20215 0.90568 0.96030 0.85914 1.42808 1.71106 1.12068 1.13207 1.19077 1.32234 0.89520 0.96171 0.89251 1.24674 1.01183 0.96597 0.96876 1.69698 1.51627 1.24773 1.12257 0.86551 0.79674 0.83521 0.78810 1.21144 1.21838 1.20278 1.21792 1.00266 1.00104 0.94170 1.21726 0.93890 1.01749 0.98292 1.22457 0.89150 0.90642 1.02759 1.98393 1.34114 1.67231 1.96861 1.77354 0.99945 1.08181 1.25327 0.90345 0.88941 0.88903 0.80020 0.87917 0.88031 0.76945 0.89631 0.92184 0.92340 0.92679 0.91429 0.92710 0.80709 0.93133 0.92148 0.91319 0.91814 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.43 11.47 59.85 0.69 1.12 16 2 N -0.36 -3.24 4.01 -68.16 -0.27 -3.52 16 3 C 0.08 0.64 11.40 -17.23 -0.20 0.44 16 4 C -0.20 -2.03 4.60 -105.02 -0.48 -2.51 16 5 C -0.06 -0.49 6.04 -29.03 -0.18 -0.67 16 6 C 0.51 5.76 7.79 -10.98 -0.09 5.68 16 7 O -0.53 -8.46 15.70 5.55 0.09 -8.37 16 8 N -0.73 -7.11 5.08 -53.81 -0.27 -7.38 16 9 C 0.15 1.82 2.45 -67.93 -0.17 1.66 16 10 C -0.12 -1.75 5.49 -26.73 -0.15 -1.89 16 11 C -0.13 -2.35 5.50 -26.73 -0.15 -2.49 16 12 C 0.18 3.40 2.77 -67.93 -0.19 3.22 16 13 N -0.75 -17.69 4.92 -53.42 -0.26 -17.95 16 14 C -0.24 -6.76 10.41 -15.06 -0.16 -6.91 16 15 H 0.09 2.69 8.06 -52.48 -0.42 2.26 16 16 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 17 N -0.94 -29.53 13.97 55.49 0.78 -28.76 16 18 Si 0.88 22.37 27.73 -169.99 -4.71 17.65 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 21 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 22 C -0.12 -1.86 5.39 -26.74 -0.14 -2.00 16 23 C -0.12 -1.36 5.39 -26.73 -0.14 -1.50 16 24 C 0.14 1.69 7.84 -17.30 -0.14 1.56 16 25 Cl 0.01 0.07 29.16 -51.86 -1.51 -1.44 16 26 N -0.28 -3.47 12.58 32.94 0.41 -3.05 16 27 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.18 0.76 8.06 -52.48 -0.42 0.33 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 2.57 8.60 -40.82 -0.35 2.22 16 34 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 40 H 0.36 8.42 5.66 -40.82 -0.23 8.19 16 41 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -37.35 386.12 -8.42 -45.77 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.90 Total: 5.58 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.58 Total: -4.35 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.38 Total: -60.66 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.71 Total: 17.65 kcal Atomic # 17 Polarization: 0.07 SS G_CDS: -1.51 Total: -1.44 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.35 -8.42 -45.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026558213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.950 kcal (2) G-P(sol) polarization free energy of solvation -37.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds