Wall clock time and date at job start Sat Apr 11 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46851 * 2 1 4 4 N 1.28438 * 125.18788 * 275.32609 * 3 2 1 5 5 C 1.30834 * 110.98269 * 180.24528 * 4 3 2 6 6 C 1.39806 * 107.87849 * 359.75233 * 5 4 3 7 7 Cl 1.73595 * 127.33995 * 180.02562 * 6 5 4 8 8 C 1.36750 * 125.19114 * 95.14816 * 3 2 1 9 9 C 1.47031 * 126.90042 * 0.03092 * 8 3 2 10 10 O 1.21643 * 119.99807 * 266.87062 * 9 8 3 11 11 N 1.34776 * 119.99933 * 86.87738 * 9 8 3 12 12 C 1.46920 * 120.63007 * 355.02265 * 11 9 8 13 13 C 1.53199 * 108.77180 * 126.37259 * 12 11 9 14 14 C 1.53038 * 109.30992 * 54.63675 * 13 12 11 15 15 C 1.53043 * 109.54123 * 298.63411 * 14 13 12 16 16 H 1.09005 * 109.49205 * 301.38379 * 15 14 13 17 17 N 1.46494 * 109.50055 * 181.31604 * 15 14 13 18 18 C 1.46505 * 120.00335 * 300.00293 * 17 15 14 19 19 C 1.36945 * 119.99864 * 119.99719 * 17 15 14 20 20 H 1.07998 * 119.99706 * 23.88285 * 19 17 15 21 21 C 1.38809 * 119.99654 * 203.88102 * 19 17 15 22 22 N 1.31620 * 120.00531 * 10.99094 * 21 19 17 23 23 Si 1.86802 * 119.99676 * 190.98532 * 21 19 17 24 24 H 1.48495 * 109.47227 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47037 * 120.00032 * 23 21 19 26 26 H 1.48500 * 109.47382 * 240.00156 * 23 21 19 27 27 C 1.46923 * 120.62871 * 175.00766 * 11 9 8 28 28 H 1.09004 * 109.47083 * 64.95688 * 1 2 3 29 29 H 1.08998 * 109.47045 * 184.95296 * 1 2 3 30 30 H 1.09001 * 109.47476 * 304.95512 * 1 2 3 31 31 H 1.09002 * 109.47092 * 239.99951 * 2 1 3 32 32 H 1.08996 * 109.47045 * 119.99653 * 2 1 3 33 33 H 1.08004 * 126.06143 * 179.78892 * 5 4 3 34 34 H 1.08997 * 109.59083 * 246.16227 * 12 11 9 35 35 H 1.09000 * 109.58685 * 6.44673 * 12 11 9 36 36 H 1.08996 * 109.49742 * 294.68394 * 13 12 11 37 37 H 1.09001 * 109.49691 * 174.58422 * 13 12 11 38 38 H 1.09002 * 109.45863 * 178.61164 * 14 13 12 39 39 H 1.09005 * 109.46079 * 58.65391 * 14 13 12 40 40 H 1.09001 * 109.47087 * 95.27103 * 18 17 15 41 41 H 1.08989 * 109.47042 * 215.27384 * 18 17 15 42 42 H 1.09004 * 109.46476 * 335.27168 * 18 17 15 43 43 H 0.96998 * 119.99958 * 180.02562 * 22 21 19 44 44 H 1.09006 * 109.58483 * 113.83478 * 27 11 9 45 45 H 1.09001 * 109.70704 * 353.48527 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1731 2.1115 -1.0451 5 6 2.6288 3.2956 -0.7260 6 6 2.7789 3.3376 0.6634 7 17 3.3487 4.6686 1.6212 8 6 2.3755 2.0908 1.1131 9 6 2.3437 1.6225 2.5064 10 8 1.3625 1.8286 3.1951 11 7 3.4020 0.9650 3.0206 12 6 4.5488 0.6131 2.1724 13 6 5.8272 1.1488 2.8248 14 6 5.9217 0.6237 4.2592 15 6 4.7215 1.1228 5.0671 16 1 4.7054 2.2127 5.0589 17 7 4.8291 0.6457 6.4480 18 6 4.8685 -0.7923 6.7253 19 6 4.8929 1.5440 7.4797 20 1 4.4910 2.5386 7.3553 21 6 5.4742 1.1760 8.6853 22 7 6.1532 0.0518 8.7726 23 14 5.2930 2.2764 10.1839 24 1 4.4891 3.4723 9.8255 25 1 4.6086 1.5272 11.2682 26 1 6.6367 2.7040 10.6495 27 6 3.4307 0.5869 4.4401 28 1 -0.3633 0.4350 -0.9311 29 1 -0.3633 -1.0238 0.0887 30 1 -0.3634 0.5888 0.8423 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.8493 4.0986 -1.4138 34 1 4.6138 -0.4708 2.0770 35 1 4.4245 1.0600 1.1861 36 1 5.8003 2.2383 2.8372 37 1 6.6943 0.8122 2.2564 38 1 6.8429 0.9834 4.7176 39 1 5.9236 -0.4663 4.2476 40 1 5.9053 -1.1174 6.8117 41 1 4.3446 -0.9967 7.6589 42 1 4.3849 -1.3326 5.9114 43 1 6.5591 -0.2055 9.6152 44 1 3.4043 -0.4991 4.5295 45 1 2.5698 1.0166 4.9524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027423731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:58 Heat of formation + Delta-G solvation = 67.388717 kcal Electronic energy + Delta-G solvation = -28613.169155 eV Core-core repulsion = 24694.464817 eV Total energy + Delta-G solvation = -3918.704338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.88207 -39.87086 -37.50930 -36.69187 -35.17405 -34.84611 -32.50031 -31.45454 -30.94468 -30.07625 -28.76861 -26.05434 -25.62261 -24.41253 -23.76990 -22.54530 -21.87758 -21.48194 -19.64858 -18.82007 -18.00372 -16.80461 -16.65114 -16.23773 -15.68187 -15.57339 -14.96143 -14.63093 -14.55029 -14.19332 -14.12980 -13.82643 -13.53515 -13.43235 -13.17567 -12.73530 -12.69202 -12.49933 -12.38526 -12.04092 -12.00035 -11.83738 -11.68523 -11.11581 -10.99082 -10.86746 -10.69931 -10.65358 -10.47492 -10.37430 -10.21052 -10.09904 -9.91480 -9.76285 -9.48002 -8.91525 -8.69659 -8.47134 -6.77567 -5.73929 -3.22193 1.28530 1.59722 2.21250 2.26563 2.60415 3.01020 3.37890 3.45635 3.48297 4.09706 4.17365 4.47895 4.50177 4.65588 4.75064 4.85527 4.95872 5.09009 5.13166 5.19353 5.26906 5.37378 5.41321 5.46519 5.49159 5.68581 5.70727 5.78199 5.93066 5.93633 6.10427 6.13103 6.30759 6.35232 6.44791 6.53402 6.71052 6.88466 6.95273 7.34104 7.34686 7.66712 7.71214 7.80851 8.00392 8.38443 9.21760 9.83447 10.31756 11.30393 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.003336 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.363880 B = 8392.113067 C = 8929.064476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.266 5.266 4 N -0.273 5.273 5 C 0.023 3.977 6 C -0.120 4.120 7 Cl -0.016 7.016 8 C 0.003 3.997 9 C 0.585 3.415 10 O -0.516 6.516 11 N -0.587 5.587 12 C 0.108 3.892 13 C -0.131 4.131 14 C -0.131 4.131 15 C 0.169 3.831 16 H 0.067 0.933 17 N -0.592 5.592 18 C 0.162 3.838 19 C -0.255 4.255 20 H 0.069 0.931 21 C 0.005 3.995 22 N -0.907 5.907 23 Si 0.904 3.096 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.097 3.903 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.033 0.967 41 H 0.041 0.959 42 H -0.002 1.002 43 H 0.252 0.748 44 H 0.069 0.931 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.425 -0.377 -21.312 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.003 4.003 3 N -0.054 5.054 4 N -0.103 5.103 5 C -0.155 4.155 6 C -0.157 4.157 7 Cl 0.012 6.988 8 C -0.127 4.127 9 C 0.368 3.632 10 O -0.390 6.390 11 N -0.320 5.320 12 C -0.015 4.015 13 C -0.170 4.170 14 C -0.171 4.171 15 C 0.060 3.940 16 H 0.085 0.915 17 N -0.313 5.313 18 C 0.017 3.983 19 C -0.385 4.385 20 H 0.087 0.913 21 C -0.194 4.194 22 N -0.552 5.552 23 Si 0.734 3.266 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.217 1.217 27 C -0.026 4.026 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.211 0.789 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.211 -1.079 -21.553 22.456 hybrid contribution 0.418 1.147 1.561 1.982 sum -5.793 0.068 -19.992 20.815 Atomic orbital electron populations 1.22183 0.92922 1.03918 1.03921 1.22106 0.96669 0.76085 1.05463 1.45761 1.45666 1.12249 1.01769 1.73200 1.19393 1.04233 1.13500 1.23495 1.03613 0.95697 0.92734 1.21258 1.11056 0.90742 0.92682 1.98376 1.87140 1.42754 1.70516 1.21322 1.07963 0.93528 0.89922 1.16931 0.83578 0.78574 0.84129 1.90868 1.32349 1.55635 1.60147 1.48176 1.17347 1.54887 1.11625 1.21782 0.86175 1.00104 0.93433 1.21914 0.95895 1.01497 0.97660 1.22131 1.01229 1.00589 0.93168 1.20578 0.90382 0.97737 0.85314 0.91469 1.43884 1.85271 1.02653 0.99516 1.20804 0.99209 0.82419 0.95830 1.19274 1.32171 0.95515 0.91492 0.91329 1.25026 0.97663 0.97632 0.99045 1.70063 1.36561 1.23647 1.24944 0.86186 0.77328 0.80028 0.83045 1.20238 1.21602 1.21708 1.22576 1.02409 1.00299 0.77350 0.91179 0.89758 0.91154 0.87395 0.88194 0.78917 0.91132 0.90850 0.91405 0.91139 0.91219 0.92423 0.94912 0.94017 0.98404 0.93815 0.91306 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.24 37.16 0.38 -0.94 16 2 C 0.12 0.94 6.91 -4.04 -0.03 0.92 16 3 N -0.27 -2.99 3.35 -57.11 -0.19 -3.18 16 4 N -0.27 -3.09 11.89 30.61 0.36 -2.73 16 5 C 0.02 0.25 12.04 -17.39 -0.21 0.04 16 6 C -0.12 -1.54 6.89 -38.88 -0.27 -1.80 16 7 Cl -0.02 -0.22 29.24 -51.86 -1.52 -1.73 16 8 C 0.00 0.04 4.65 -82.00 -0.38 -0.34 16 9 C 0.58 9.23 6.79 -12.70 -0.09 9.14 16 10 O -0.52 -9.98 16.54 5.24 0.09 -9.90 16 11 N -0.59 -8.70 2.97 -174.19 -0.52 -9.22 16 12 C 0.11 1.29 6.35 -3.71 -0.02 1.27 16 13 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 14 C -0.13 -2.21 5.15 -26.69 -0.14 -2.35 16 15 C 0.17 3.34 2.74 -67.81 -0.19 3.16 16 16 H 0.07 1.43 7.87 -51.93 -0.41 1.02 16 17 N -0.59 -14.31 2.81 -173.35 -0.49 -14.80 16 18 C 0.16 3.81 8.03 59.85 0.48 4.29 16 19 C -0.26 -6.93 9.58 -15.06 -0.14 -7.07 16 20 H 0.07 1.86 7.82 -52.49 -0.41 1.45 16 21 C 0.00 0.13 5.14 -17.43 -0.09 0.04 16 22 N -0.91 -25.94 10.65 55.49 0.59 -25.35 16 23 Si 0.90 21.86 29.57 -169.99 -5.03 16.84 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.10 1.70 5.76 -3.71 -0.02 1.67 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 0.79 7.65 -51.93 -0.40 0.39 16 33 H 0.19 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.82 6.32 -51.93 -0.33 0.49 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 0.96 7.72 -51.93 -0.40 0.56 16 40 H 0.03 0.84 7.32 -51.93 -0.38 0.46 16 41 H 0.04 1.07 7.36 -51.93 -0.38 0.69 16 42 H 0.00 -0.05 6.35 -51.93 -0.33 -0.38 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.07 1.17 6.50 -51.93 -0.34 0.83 16 45 H 0.09 1.85 7.04 -51.93 -0.37 1.49 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -31.75 378.14 -8.55 -40.31 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -6.68 Total: -2.10 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.88 Total: 6.16 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.24 Total: -55.27 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.52 Total: -1.73 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.75 -8.55 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027423731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.697 kcal (2) G-P(sol) polarization free energy of solvation -31.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds