Wall clock time and date at job start Sat Apr 11 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.46851 * 2 1 4 4 N 1.28438 * 125.18788 * 275.32609 * 3 2 1 5 5 C 1.30834 * 110.98269 * 180.24528 * 4 3 2 6 6 C 1.39806 * 107.87849 * 359.75233 * 5 4 3 7 7 Cl 1.73595 * 127.33995 * 180.02562 * 6 5 4 8 8 C 1.36750 * 125.19114 * 95.14816 * 3 2 1 9 9 C 1.47031 * 126.90042 * 0.03092 * 8 3 2 10 10 O 1.21643 * 119.99807 * 266.87062 * 9 8 3 11 11 N 1.34776 * 119.99933 * 86.87738 * 9 8 3 12 12 C 1.46920 * 120.63007 * 355.02265 * 11 9 8 13 13 C 1.53199 * 108.77180 * 126.37259 * 12 11 9 14 14 C 1.53038 * 109.30992 * 54.63675 * 13 12 11 15 15 C 1.53043 * 109.54123 * 298.63411 * 14 13 12 16 16 H 1.09005 * 109.49205 * 301.38379 * 15 14 13 17 17 N 1.46494 * 109.50055 * 181.31604 * 15 14 13 18 18 C 1.46505 * 120.00335 * 300.00293 * 17 15 14 19 19 C 1.36945 * 119.99864 * 119.99719 * 17 15 14 20 20 H 1.07998 * 119.99706 * 23.88285 * 19 17 15 21 21 C 1.38809 * 119.99654 * 203.88102 * 19 17 15 22 22 N 1.31620 * 120.00531 * 10.99094 * 21 19 17 23 23 Si 1.86802 * 119.99676 * 190.98532 * 21 19 17 24 24 H 1.48495 * 109.47227 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47037 * 120.00032 * 23 21 19 26 26 H 1.48500 * 109.47382 * 240.00156 * 23 21 19 27 27 C 1.46923 * 120.62871 * 175.00766 * 11 9 8 28 28 H 1.09004 * 109.47083 * 64.95688 * 1 2 3 29 29 H 1.08998 * 109.47045 * 184.95296 * 1 2 3 30 30 H 1.09001 * 109.47476 * 304.95512 * 1 2 3 31 31 H 1.09002 * 109.47092 * 239.99951 * 2 1 3 32 32 H 1.08996 * 109.47045 * 119.99653 * 2 1 3 33 33 H 1.08004 * 126.06143 * 179.78892 * 5 4 3 34 34 H 1.08997 * 109.59083 * 246.16227 * 12 11 9 35 35 H 1.09000 * 109.58685 * 6.44673 * 12 11 9 36 36 H 1.08996 * 109.49742 * 294.68394 * 13 12 11 37 37 H 1.09001 * 109.49691 * 174.58422 * 13 12 11 38 38 H 1.09002 * 109.45863 * 178.61164 * 14 13 12 39 39 H 1.09005 * 109.46079 * 58.65391 * 14 13 12 40 40 H 1.09001 * 109.47087 * 95.27103 * 18 17 15 41 41 H 1.08989 * 109.47042 * 215.27384 * 18 17 15 42 42 H 1.09004 * 109.46476 * 335.27168 * 18 17 15 43 43 H 0.96998 * 119.99958 * 180.02562 * 22 21 19 44 44 H 1.09006 * 109.58483 * 113.83478 * 27 11 9 45 45 H 1.09001 * 109.70704 * 353.48527 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1731 2.1115 -1.0451 5 6 2.6288 3.2956 -0.7260 6 6 2.7789 3.3376 0.6634 7 17 3.3487 4.6686 1.6212 8 6 2.3755 2.0908 1.1131 9 6 2.3437 1.6225 2.5064 10 8 1.3625 1.8286 3.1951 11 7 3.4020 0.9650 3.0206 12 6 4.5488 0.6131 2.1724 13 6 5.8272 1.1488 2.8248 14 6 5.9217 0.6237 4.2592 15 6 4.7215 1.1228 5.0671 16 1 4.7054 2.2127 5.0589 17 7 4.8291 0.6457 6.4480 18 6 4.8685 -0.7923 6.7253 19 6 4.8929 1.5440 7.4797 20 1 4.4910 2.5386 7.3553 21 6 5.4742 1.1760 8.6853 22 7 6.1532 0.0518 8.7726 23 14 5.2930 2.2764 10.1839 24 1 4.4891 3.4723 9.8255 25 1 4.6086 1.5272 11.2682 26 1 6.6367 2.7040 10.6495 27 6 3.4307 0.5869 4.4401 28 1 -0.3633 0.4350 -0.9311 29 1 -0.3633 -1.0238 0.0887 30 1 -0.3634 0.5888 0.8423 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.8493 4.0986 -1.4138 34 1 4.6138 -0.4708 2.0770 35 1 4.4245 1.0600 1.1861 36 1 5.8003 2.2383 2.8372 37 1 6.6943 0.8122 2.2564 38 1 6.8429 0.9834 4.7176 39 1 5.9236 -0.4663 4.2476 40 1 5.9053 -1.1174 6.8117 41 1 4.3446 -0.9967 7.6589 42 1 4.3849 -1.3326 5.9114 43 1 6.5591 -0.2055 9.6152 44 1 3.4043 -0.4991 4.5295 45 1 2.5698 1.0166 4.9524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027423731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:57 Heat of formation + Delta-G solvation = 48.478787 kcal Electronic energy + Delta-G solvation = -28613.989151 eV Core-core repulsion = 24694.464817 eV Total energy + Delta-G solvation = -3919.524334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.78239 -41.15371 -38.97118 -37.68178 -36.84757 -35.57501 -34.08391 -32.95767 -32.11662 -30.84064 -30.33977 -28.04964 -26.86329 -25.45382 -25.11218 -23.66744 -23.12636 -22.60499 -20.89112 -20.08037 -19.15446 -18.70696 -17.83166 -17.15959 -17.09339 -16.59934 -16.50803 -15.84328 -15.72213 -15.43912 -15.31932 -15.11906 -14.93247 -14.57853 -14.49385 -13.99352 -13.90179 -13.79757 -13.73268 -13.14722 -12.91012 -12.87939 -12.84229 -12.77190 -12.55818 -12.35623 -12.31074 -12.12623 -11.97053 -11.86165 -11.78049 -11.60484 -11.43608 -11.37888 -10.68494 -10.36332 -9.89841 -9.86882 -8.76048 -7.83930 -5.33816 0.30645 0.67006 1.10291 1.38553 1.43386 1.45508 1.53014 1.56235 1.94665 2.49204 3.07727 3.29178 3.41761 3.56800 3.86439 3.89044 3.93819 3.97411 4.01592 4.12110 4.14714 4.19544 4.29349 4.31071 4.50937 4.62255 4.64377 4.72743 4.73807 4.78791 4.89086 4.96086 5.09047 5.09977 5.12603 5.28504 5.30717 5.44868 5.47707 5.53692 5.64299 5.75205 6.12373 6.32425 6.76642 6.79944 7.14866 7.85264 8.27189 9.17887 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.003336 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.363880 B = 8392.113067 C = 8929.064476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.258 5.258 4 N -0.271 5.271 5 C 0.029 3.971 6 C -0.129 4.129 7 Cl -0.027 7.027 8 C -0.015 4.015 9 C 0.589 3.411 10 O -0.560 6.560 11 N -0.583 5.583 12 C 0.109 3.891 13 C -0.121 4.121 14 C -0.120 4.120 15 C 0.168 3.832 16 H 0.043 0.957 17 N -0.608 5.608 18 C 0.179 3.821 19 C -0.265 4.265 20 H 0.060 0.940 21 C -0.044 4.044 22 N -0.932 5.932 23 Si 0.963 3.037 24 H -0.273 1.273 25 H -0.289 1.289 26 H -0.289 1.289 27 C 0.114 3.886 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.039 0.961 31 H 0.139 0.861 32 H 0.103 0.897 33 H 0.224 0.776 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.010 0.990 41 H 0.011 0.989 42 H 0.035 0.965 43 H 0.249 0.751 44 H 0.081 0.919 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 -0.992 -24.173 24.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.047 5.047 4 N -0.101 5.101 5 C -0.148 4.148 6 C -0.167 4.167 7 Cl 0.002 6.998 8 C -0.145 4.145 9 C 0.374 3.626 10 O -0.438 6.438 11 N -0.315 5.315 12 C -0.013 4.013 13 C -0.160 4.160 14 C -0.160 4.160 15 C 0.060 3.940 16 H 0.061 0.939 17 N -0.331 5.331 18 C 0.034 3.966 19 C -0.395 4.395 20 H 0.078 0.922 21 C -0.239 4.239 22 N -0.578 5.578 23 Si 0.791 3.209 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.216 1.216 27 C -0.010 4.010 28 H 0.090 0.910 29 H 0.127 0.873 30 H 0.058 0.942 31 H 0.157 0.843 32 H 0.121 0.879 33 H 0.241 0.759 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.028 0.972 41 H 0.030 0.970 42 H 0.053 0.947 43 H 0.058 0.942 44 H 0.099 0.901 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.056 -1.697 -24.476 25.271 hybrid contribution 0.330 1.349 2.366 2.744 sum -5.726 -0.348 -22.109 22.842 Atomic orbital electron populations 1.22154 0.92782 1.04894 1.02590 1.22474 0.96797 0.74801 1.07111 1.46075 1.44761 1.12977 1.00862 1.73234 1.19188 1.04469 1.13237 1.23973 1.02504 0.96191 0.92134 1.21460 1.11459 0.90253 0.93564 1.98373 1.87259 1.43232 1.70960 1.20981 1.09893 0.94396 0.89276 1.17183 0.82905 0.77607 0.84889 1.90845 1.34096 1.57252 1.61590 1.48165 1.18212 1.54468 1.10650 1.22018 0.84059 1.01950 0.93253 1.21850 0.97946 1.00883 0.95291 1.21927 0.98150 1.00886 0.95003 1.20681 0.92830 0.96515 0.83966 0.93850 1.44060 1.85572 1.02573 1.00858 1.20528 0.97718 0.82540 0.95781 1.19478 1.31566 0.95697 0.92795 0.92202 1.25679 0.97900 0.99013 1.01349 1.70199 1.37505 1.24944 1.25194 0.85274 0.77117 0.78568 0.79918 1.19776 1.21585 1.21561 1.22101 0.99656 1.00419 0.78870 0.91001 0.87331 0.94205 0.84345 0.87913 0.75917 0.88277 0.89174 0.92363 0.87819 0.93733 0.91641 0.97161 0.97011 0.94710 0.94187 0.90097 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 71.98 0.74 -1.50 16 2 C 0.11 1.42 6.91 86.38 0.60 2.02 16 3 N -0.26 -5.14 3.35 -334.60 -1.12 -6.26 16 4 N -0.27 -5.30 11.89 -57.06 -0.68 -5.98 16 5 C 0.03 0.55 12.04 85.22 1.03 1.57 16 6 C -0.13 -3.10 6.89 22.72 0.16 -2.95 16 7 Cl -0.03 -0.68 29.24 -2.72 -0.08 -0.76 16 8 C -0.01 -0.37 4.65 40.76 0.19 -0.18 16 9 C 0.59 18.28 6.79 86.55 0.59 18.87 16 10 O -0.56 -22.19 16.54 -4.17 -0.07 -22.26 16 11 N -0.58 -16.54 2.97 -823.25 -2.45 -18.99 16 12 C 0.11 2.25 6.35 86.37 0.55 2.80 16 13 C -0.12 -2.84 6.08 30.67 0.19 -2.65 16 14 C -0.12 -3.92 5.15 30.62 0.16 -3.76 16 15 C 0.17 6.70 2.74 45.07 0.12 6.82 16 16 H 0.04 1.91 7.87 -2.38 -0.02 1.89 16 17 N -0.61 -30.06 2.81 -702.35 -1.98 -32.04 16 18 C 0.18 8.52 8.03 127.77 1.03 9.55 16 19 C -0.27 -14.81 9.58 84.03 0.81 -14.00 16 20 H 0.06 3.37 7.82 -2.91 -0.02 3.35 16 21 C -0.04 -2.47 5.14 84.86 0.44 -2.03 16 22 N -0.93 -54.51 10.65 21.65 0.23 -54.28 16 23 Si 0.96 45.84 29.57 68.60 2.03 47.86 16 24 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 C 0.11 3.96 5.76 86.36 0.50 4.46 16 28 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.14 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.10 1.33 7.65 -2.39 -0.02 1.31 16 33 H 0.22 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.09 1.67 6.32 -2.39 -0.02 1.65 16 36 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 2.04 7.72 -2.38 -0.02 2.02 16 40 H 0.01 0.53 7.32 -2.39 -0.02 0.51 16 41 H 0.01 0.59 7.36 -2.39 -0.02 0.58 16 42 H 0.03 1.36 6.35 -2.38 -0.02 1.35 16 43 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.08 2.62 6.50 -2.38 -0.02 2.61 16 45 H 0.06 2.59 7.04 -2.39 -0.02 2.58 16 Total: -1.00 -71.62 378.14 3.96 -67.66 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 1.00 Total: 6.03 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 7.07 Total: 19.01 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -5.99 Total: -117.55 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.07 Total: -22.26 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -71.62 3.96 -67.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027423731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.143 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds