Wall clock time and date at job start Sat Apr 11 2020 06:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36932 * 120.00292 * 2 1 4 4 H 1.08003 * 119.99747 * 202.01316 * 3 2 1 5 5 C 1.38811 * 120.00262 * 22.00114 * 3 2 1 6 6 N 1.31621 * 119.99694 * 12.69887 * 5 3 2 7 7 Si 1.86797 * 120.00203 * 192.69310 * 5 3 2 8 8 H 1.48504 * 109.47194 * 60.00569 * 7 5 3 9 9 H 1.48503 * 109.46898 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47438 * 300.00291 * 7 5 3 11 11 C 1.46507 * 119.99531 * 179.97438 * 2 1 3 12 12 H 1.09003 * 109.49336 * 179.97438 * 11 2 1 13 13 C 1.53041 * 109.49852 * 299.99819 * 11 2 1 14 14 C 1.53037 * 109.53561 * 181.35291 * 13 11 2 15 15 C 1.53194 * 109.31142 * 298.63087 * 14 13 11 16 16 N 1.46927 * 108.77133 * 54.64022 * 15 14 13 17 17 C 1.34780 * 120.62689 * 126.36796 * 16 15 14 18 18 O 1.21279 * 119.99558 * 179.97438 * 17 16 15 19 19 C 1.50691 * 120.00385 * 359.97438 * 17 16 15 20 20 C 1.50704 * 109.47283 * 179.97438 * 19 17 16 21 21 C 1.35309 * 126.04307 * 99.99960 * 20 19 17 22 22 N 1.34949 * 107.76347 * 179.71546 * 21 20 19 23 23 C 1.46500 * 126.02322 * 180.29820 * 22 21 20 24 24 N 1.40078 * 107.94882 * 0.26119 * 22 21 20 25 25 C 1.30902 * 108.20337 * 0.02562 * 24 22 21 26 26 Cl 1.73593 * 125.91450 * 179.97438 * 25 24 22 27 27 C 1.46919 * 118.74118 * 306.63763 * 16 15 14 28 28 H 1.09003 * 109.46927 * 274.32917 * 1 2 3 29 29 H 1.09000 * 109.46793 * 34.32052 * 1 2 3 30 30 H 1.08999 * 109.47330 * 154.32376 * 1 2 3 31 31 H 0.97004 * 119.99816 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.46159 * 61.32732 * 13 11 2 33 33 H 1.09001 * 109.46037 * 301.37274 * 13 11 2 34 34 H 1.09006 * 109.49594 * 178.68374 * 14 13 11 35 35 H 1.09003 * 109.50235 * 58.58815 * 14 13 11 36 36 H 1.08997 * 109.58620 * 294.85125 * 15 14 13 37 37 H 1.09000 * 109.70469 * 174.49179 * 15 14 13 38 38 H 1.09004 * 109.47525 * 60.00111 * 19 17 16 39 39 H 1.09001 * 109.47474 * 300.00154 * 19 17 16 40 40 H 1.07998 * 126.11684 * 359.97438 * 21 20 19 41 41 H 1.09006 * 109.47212 * 90.00035 * 23 22 21 42 42 H 1.09004 * 109.46930 * 209.99527 * 23 22 21 43 43 H 1.08995 * 109.47201 * 329.99712 * 23 22 21 44 44 H 1.08999 * 109.59076 * 173.14848 * 27 16 15 45 45 H 1.09000 * 109.58847 * 293.57817 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1707 1.2198 -0.3506 5 6 1.5316 2.3443 0.4503 6 7 0.3918 2.2703 1.1045 7 14 2.3174 4.0080 0.1282 8 1 2.4494 4.2179 -1.3360 9 1 1.4659 5.0780 0.7073 10 1 3.6616 4.0508 0.7575 11 6 2.1974 -1.2688 0.0006 12 1 3.2692 -1.0702 0.0000 13 6 1.8281 -2.0713 1.2503 14 6 2.6181 -3.3819 1.2689 15 6 2.2508 -4.2123 0.0351 16 7 2.4665 -3.3948 -1.1665 17 6 3.2382 -3.8466 -2.1749 18 8 3.4081 -3.1623 -3.1617 19 6 3.8897 -5.2018 -2.0764 20 6 4.6910 -5.4660 -3.3250 21 6 6.0305 -5.3258 -3.4560 22 7 6.3582 -5.6647 -4.7205 23 6 7.7076 -5.6628 -5.2908 24 7 5.1808 -6.0195 -5.3913 25 6 4.1809 -5.8963 -4.5554 26 17 2.5122 -6.2183 -4.9093 27 6 1.8300 -2.0730 -1.2452 28 1 -0.3633 0.0776 1.0248 29 1 -0.3633 0.8488 -0.5794 30 1 -0.3634 -0.9262 -0.4453 31 1 -0.0403 3.0799 1.4189 32 1 0.7605 -2.2908 1.2386 33 1 2.0692 -1.4893 2.1399 34 1 2.3720 -3.9422 2.1710 35 1 3.6859 -3.1634 1.2557 36 1 1.2033 -4.5084 0.0925 37 1 2.8798 -5.1014 -0.0101 38 1 3.1213 -5.9675 -1.9694 39 1 4.5495 -5.2256 -1.2090 40 1 6.7153 -5.0046 -2.6852 41 1 8.1682 -6.6388 -5.1378 42 1 7.6505 -5.4513 -6.3586 43 1 8.3082 -4.8968 -4.8003 44 1 2.1833 -1.5496 -2.1337 45 1 0.7475 -2.1910 -1.2943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027574703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:09 Heat of formation + Delta-G solvation = 69.019956 kcal Electronic energy + Delta-G solvation = -27706.635534 eV Core-core repulsion = 23788.001932 eV Total energy + Delta-G solvation = -3918.633602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55829 -39.77356 -37.36979 -36.82543 -35.03311 -33.76342 -32.43190 -31.88715 -31.24589 -29.18862 -28.21649 -26.21039 -25.95392 -24.63543 -23.40679 -21.61618 -21.49590 -20.96964 -19.45885 -18.50216 -17.17177 -17.02389 -16.66902 -15.82509 -15.46246 -15.32320 -15.18906 -14.75764 -14.08503 -13.95851 -13.84013 -13.71743 -13.53675 -13.41329 -12.99837 -12.85171 -12.63540 -12.55704 -12.22003 -11.93387 -11.89650 -11.78432 -11.62127 -11.01588 -10.91075 -10.81982 -10.67614 -10.58739 -10.38486 -10.26720 -10.09718 -9.84069 -9.75123 -9.55720 -9.40976 -8.63627 -8.55530 -8.24756 -6.72758 -5.69269 -3.14757 1.35095 1.53354 2.29818 2.66858 2.92562 3.34640 3.41939 3.46779 3.49263 4.23060 4.51291 4.52649 4.74291 4.78654 4.84995 4.97551 5.04426 5.05462 5.20916 5.31096 5.36578 5.40387 5.48360 5.57967 5.64915 5.70799 5.82439 5.92260 5.99571 6.05400 6.20818 6.28370 6.43481 6.56799 6.63614 6.71791 6.85542 6.99706 7.04874 7.23398 7.42699 7.74154 7.75594 7.84390 8.41981 8.51342 9.26807 9.89767 10.37947 11.35502 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.002770 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.264865 B =10106.620036 C =10745.734540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.593 5.593 3 C -0.254 4.254 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.170 3.830 12 H 0.063 0.937 13 C -0.132 4.132 14 C -0.132 4.132 15 C 0.108 3.892 16 N -0.608 5.608 17 C 0.512 3.488 18 O -0.532 6.532 19 C -0.062 4.062 20 C -0.202 4.202 21 C 0.078 3.922 22 N -0.365 5.365 23 C 0.103 3.897 24 N -0.284 5.284 25 C 0.143 3.857 26 Cl 0.006 6.994 27 C 0.098 3.902 28 H 0.029 0.971 29 H 0.043 0.957 30 H -0.002 1.002 31 H 0.252 0.748 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.182 0.818 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.691 -21.539 -5.006 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.554 5.554 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.060 3.940 12 H 0.081 0.919 13 C -0.172 4.172 14 C -0.171 4.171 15 C -0.016 4.016 16 N -0.342 5.342 17 C 0.299 3.701 18 O -0.408 6.408 19 C -0.104 4.104 20 C -0.214 4.214 21 C -0.068 4.068 22 N -0.148 5.148 23 C -0.037 4.037 24 N -0.110 5.110 25 C -0.049 4.049 26 Cl 0.034 6.966 27 C -0.025 4.025 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.200 0.800 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.008 -21.325 -6.758 24.932 hybrid contribution -0.082 1.204 0.793 1.444 sum 10.926 -20.121 -5.965 23.660 Atomic orbital electron populations 1.20785 0.82601 0.95526 0.99288 1.43878 1.01828 1.00029 1.85742 1.19190 0.97735 0.85292 1.36110 0.91490 1.24976 0.97798 0.98385 0.98424 1.70066 1.18489 1.27065 1.39734 0.86332 0.78388 0.83790 0.78020 1.21055 1.21666 1.21001 1.20490 0.96331 0.86255 0.90876 0.91902 1.22116 0.99438 0.94703 1.00926 1.21934 1.01001 0.97469 0.96696 1.21747 1.01385 0.93494 0.84938 1.48184 1.49437 1.18868 1.17710 1.20485 0.78855 0.88025 0.82775 1.90707 1.61025 1.58342 1.30762 1.19972 0.99209 0.95857 0.95315 1.19239 0.92679 1.13738 0.95737 1.22296 0.96110 1.00051 0.88365 1.48158 1.06411 1.51790 1.08421 1.21938 0.77143 1.03423 1.01241 1.77333 0.90072 1.24125 1.19461 1.22441 0.87958 1.01708 0.92748 1.98390 1.09074 1.93841 1.95310 1.22275 0.96895 0.81529 1.01844 0.95255 0.93821 0.98342 0.93758 0.92484 0.91576 0.91358 0.91834 0.91507 0.90327 0.88189 0.88039 0.80047 0.90446 0.89023 0.88960 0.89334 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 8.03 59.85 0.48 4.46 16 2 N -0.59 -14.80 2.82 -173.59 -0.49 -15.29 16 3 C -0.25 -7.04 9.60 -15.06 -0.14 -7.19 16 4 H 0.07 1.84 7.81 -52.48 -0.41 1.43 16 5 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 6 N -0.91 -26.48 10.64 55.49 0.59 -25.89 16 7 Si 0.90 22.17 29.57 -169.99 -5.03 17.14 16 8 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.17 3.44 2.72 -68.03 -0.19 3.26 16 12 H 0.06 1.35 7.86 -51.93 -0.41 0.94 16 13 C -0.13 -2.26 5.15 -26.69 -0.14 -2.39 16 14 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 15 C 0.11 1.19 6.35 -3.71 -0.02 1.17 16 16 N -0.61 -9.04 2.98 -173.04 -0.52 -9.56 16 17 C 0.51 7.77 7.69 -10.99 -0.08 7.68 16 18 O -0.53 -10.46 15.45 5.56 0.09 -10.37 16 19 C -0.06 -0.67 4.38 -29.04 -0.13 -0.79 16 20 C -0.20 -2.44 4.60 -105.02 -0.48 -2.92 16 21 C 0.08 0.78 11.40 -17.23 -0.20 0.58 16 22 N -0.36 -3.82 4.01 -68.16 -0.27 -4.10 16 23 C 0.10 0.57 11.47 59.85 0.69 1.25 16 24 N -0.28 -3.92 12.58 32.94 0.41 -3.51 16 25 C 0.14 1.97 7.84 -17.30 -0.14 1.84 16 26 Cl 0.01 0.08 29.16 -51.86 -1.51 -1.43 16 27 C 0.10 1.82 5.77 -3.94 -0.02 1.80 16 28 H 0.03 0.77 7.41 -51.93 -0.38 0.38 16 29 H 0.04 1.17 7.21 -51.93 -0.37 0.79 16 30 H 0.00 -0.04 6.35 -51.93 -0.33 -0.37 16 31 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.62 5.93 -51.93 -0.31 0.31 16 38 H 0.10 0.90 7.94 -51.93 -0.41 0.49 16 39 H 0.10 0.78 7.69 -51.93 -0.40 0.38 16 40 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 1.90 7.01 -51.93 -0.36 1.54 16 45 H 0.06 1.15 6.48 -51.93 -0.34 0.81 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -35.43 377.48 -8.31 -43.74 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -6.65 Total: -3.36 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.62 Total: 6.94 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.27 Total: -58.34 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -1.51 Total: -1.43 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.43 -8.31 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027574703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.759 kcal (2) G-P(sol) polarization free energy of solvation -35.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds