Wall clock time and date at job start Sat Apr 11 2020 06:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36927 * 120.00085 * 2 1 4 4 H 1.08006 * 120.00356 * 202.00797 * 3 2 1 5 5 C 1.38814 * 119.99858 * 22.00654 * 3 2 1 6 6 N 1.31619 * 120.00036 * 12.69514 * 5 3 2 7 7 Si 1.86802 * 120.00049 * 192.69072 * 5 3 2 8 8 H 1.48493 * 109.47183 * 90.00140 * 7 5 3 9 9 H 1.48499 * 109.47114 * 210.00334 * 7 5 3 10 10 H 1.48506 * 109.47376 * 330.00267 * 7 5 3 11 11 C 1.46500 * 119.99687 * 180.02562 * 2 1 3 12 12 H 1.09008 * 109.49556 * 179.97438 * 11 2 1 13 13 C 1.53042 * 109.49970 * 299.99505 * 11 2 1 14 14 C 1.53039 * 109.53934 * 181.35384 * 13 11 2 15 15 C 1.53195 * 109.30934 * 298.63338 * 14 13 11 16 16 N 1.46925 * 108.77679 * 54.64032 * 15 14 13 17 17 C 1.34776 * 120.63684 * 126.36118 * 16 15 14 18 18 O 1.21279 * 120.00643 * 179.97438 * 17 16 15 19 19 C 1.50709 * 119.99646 * 0.02562 * 17 16 15 20 20 C 1.52995 * 109.46853 * 179.97438 * 19 17 16 21 21 N 1.46506 * 109.47098 * 179.97438 * 20 19 17 22 22 C 1.35038 * 126.03541 * 125.00251 * 21 20 19 23 23 C 1.35374 * 107.72753 * 179.70688 * 22 21 20 24 24 Cl 1.73602 * 126.04706 * 180.29815 * 23 22 21 25 25 C 1.39934 * 107.90914 * 0.26430 * 23 22 21 26 26 N 1.30849 * 108.20910 * 359.97438 * 25 23 22 27 27 C 1.46929 * 118.73668 * 306.63916 * 16 15 14 28 28 H 1.09000 * 109.47032 * 274.31622 * 1 2 3 29 29 H 1.08994 * 109.47394 * 34.32304 * 1 2 3 30 30 H 1.09005 * 109.47159 * 154.31988 * 1 2 3 31 31 H 0.97000 * 119.99831 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.45709 * 61.32900 * 13 11 2 33 33 H 1.09000 * 109.44670 * 301.36771 * 13 11 2 34 34 H 1.08995 * 109.49906 * 178.68877 * 14 13 11 35 35 H 1.08994 * 109.50141 * 58.58621 * 14 13 11 36 36 H 1.08996 * 109.58995 * 294.84779 * 15 14 13 37 37 H 1.09005 * 109.58149 * 174.41986 * 15 14 13 38 38 H 1.09002 * 109.46939 * 59.99647 * 19 17 16 39 39 H 1.08997 * 109.46923 * 300.00202 * 19 17 16 40 40 H 1.09002 * 109.47071 * 60.00420 * 20 19 17 41 41 H 1.08998 * 109.47620 * 299.99931 * 20 19 17 42 42 H 1.07998 * 126.13817 * 359.96806 * 22 21 20 43 43 H 1.07993 * 125.89771 * 179.97438 * 25 23 22 44 44 H 1.09001 * 109.58593 * 173.14229 * 27 16 15 45 45 H 1.08992 * 109.58819 * 293.57230 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1707 1.2199 -0.3505 5 6 1.5314 2.3442 0.4505 6 7 0.3917 2.2701 1.1046 7 14 2.3171 4.0080 0.1284 8 1 1.8254 4.5455 -1.1656 9 1 1.9573 4.9454 1.2225 10 1 3.7933 3.8560 0.0723 11 6 2.1974 -1.2688 -0.0006 12 1 3.2693 -1.0701 -0.0009 13 6 1.8282 -2.0723 1.2485 14 6 2.6182 -3.3829 1.2660 15 6 2.2509 -4.2123 0.0314 16 7 2.4666 -3.3938 -1.1695 17 6 3.2383 -3.8445 -2.1783 18 8 3.4082 -3.1595 -3.1646 19 6 3.8891 -5.2004 -2.0813 20 6 4.7029 -5.4673 -3.3492 21 7 5.3361 -6.7850 -3.2546 22 6 5.2193 -7.7886 -4.1506 23 6 5.9592 -8.8297 -3.7021 24 17 6.1507 -10.3629 -4.4936 25 6 6.5431 -8.4513 -2.4880 26 7 6.1678 -7.2272 -2.2178 27 6 1.8300 -2.0719 -1.2471 28 1 -0.3633 0.0773 1.0248 29 1 -0.3634 0.8487 -0.5794 30 1 -0.3634 -0.9262 -0.4454 31 1 -0.0401 3.0796 1.4197 32 1 0.7606 -2.2919 1.2366 33 1 2.0695 -1.4910 2.1384 34 1 2.3722 -3.9440 2.1674 35 1 3.6860 -3.1644 1.2529 36 1 1.2035 -4.5085 0.0885 37 1 2.8819 -5.1000 -0.0133 38 1 3.1203 -5.9657 -1.9756 39 1 4.5485 -5.2256 -1.2138 40 1 5.4717 -4.7019 -3.4552 41 1 4.0431 -5.4422 -4.2164 42 1 4.6427 -7.7636 -5.0634 43 1 7.1916 -9.0637 -1.8791 44 1 2.1834 -1.5477 -2.1350 45 1 0.7476 -2.1898 -1.2963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027693039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:14 Heat of formation + Delta-G solvation = 63.396361 kcal Electronic energy + Delta-G solvation = -27073.370427 eV Core-core repulsion = 23154.492967 eV Total energy + Delta-G solvation = -3918.877459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.65120 -40.14551 -37.66556 -36.76262 -35.17182 -34.57764 -32.43643 -31.43765 -30.96413 -29.86563 -28.66427 -26.06902 -25.75213 -24.36263 -23.35283 -21.71732 -21.59662 -21.22334 -19.58733 -18.64486 -18.03603 -16.86377 -16.67428 -16.27076 -15.90529 -15.18499 -15.11268 -14.76552 -14.57707 -14.18375 -14.02756 -13.84399 -13.65242 -13.44896 -13.30233 -12.77620 -12.70912 -12.59717 -12.37733 -12.07893 -11.97167 -11.80589 -11.60169 -11.09971 -10.98488 -10.87539 -10.82106 -10.69187 -10.45266 -10.35611 -10.16361 -9.98724 -9.91689 -9.87024 -9.68215 -8.79991 -8.66196 -8.42386 -6.80026 -5.74799 -3.20768 1.34770 1.57190 2.21336 2.40370 2.59412 3.05999 3.38073 3.44566 3.45722 4.09009 4.30843 4.39970 4.46840 4.50974 4.63696 4.86151 4.94837 5.04399 5.09954 5.19052 5.25819 5.36939 5.41522 5.44179 5.48226 5.53522 5.71997 5.80345 5.93679 5.97331 6.10654 6.16504 6.32565 6.41531 6.45555 6.57250 6.72876 6.88968 6.95228 7.15077 7.35641 7.48475 7.69483 7.79551 8.15761 8.37154 9.20926 9.83348 10.31215 11.30056 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026287 B = 0.001963 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.899629 B =14259.197384 C =14652.219623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.255 4.255 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.133 4.133 15 C 0.106 3.894 16 N -0.601 5.601 17 C 0.517 3.483 18 O -0.546 6.546 19 C -0.152 4.152 20 C 0.150 3.850 21 N -0.361 5.361 22 C 0.077 3.923 23 C -0.192 4.192 24 Cl -0.046 7.046 25 C 0.063 3.937 26 N -0.279 5.279 27 C 0.096 3.904 28 H 0.030 0.970 29 H 0.044 0.956 30 H -0.003 1.003 31 H 0.252 0.748 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.184 0.816 43 H 0.191 0.809 44 H 0.091 0.909 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.012 -24.238 -6.564 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.314 5.314 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.553 5.553 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.172 4.172 14 C -0.172 4.172 15 C -0.017 4.017 16 N -0.334 5.334 17 C 0.304 3.696 18 O -0.424 6.424 19 C -0.193 4.193 20 C 0.029 3.971 21 N -0.143 5.143 22 C -0.072 4.072 23 C -0.231 4.231 24 Cl -0.018 7.018 25 C -0.124 4.124 26 N -0.100 5.100 27 C -0.027 4.027 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.016 0.984 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.201 0.799 43 H 0.208 0.792 44 H 0.109 0.891 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.994 -22.682 -6.263 24.548 hybrid contribution 0.174 0.069 -0.578 0.608 sum 7.168 -22.613 -6.841 24.689 Atomic orbital electron populations 1.20792 0.82556 0.95485 0.99365 1.43888 1.01839 0.99992 1.85702 1.19237 0.97779 0.85178 1.36206 0.91352 1.24998 0.97806 0.98482 0.98336 1.70072 1.18520 1.27036 1.39651 0.86231 0.78789 0.83977 0.77403 1.21458 1.21765 1.20492 1.20490 0.96497 0.86332 0.90733 0.91746 1.22131 0.99414 0.94660 1.01039 1.21933 1.01165 0.97465 0.96587 1.21801 1.01454 0.93534 0.84895 1.48183 1.48648 1.18999 1.17557 1.20184 0.78900 0.87557 0.83000 1.90725 1.61862 1.58728 1.31103 1.21905 1.00871 0.96365 1.00131 1.21593 0.97089 0.79274 0.99136 1.48648 1.37053 1.12337 1.16219 1.22316 1.00412 0.87664 0.96788 1.20783 1.11550 0.91219 0.99551 1.98330 1.97053 1.26873 1.79524 1.23901 0.99973 0.93242 0.95278 1.77509 1.10097 1.12432 1.09959 1.22374 0.96998 0.81162 1.02198 0.95192 0.93750 0.98419 0.93753 0.92438 0.91382 0.91178 0.91692 0.91281 0.90303 0.88426 0.87304 0.88121 0.87257 0.79920 0.79223 0.89106 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.88 8.03 59.85 0.48 4.36 16 2 N -0.59 -14.44 2.82 -173.60 -0.49 -14.93 16 3 C -0.25 -6.94 9.60 -15.06 -0.14 -7.08 16 4 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 5 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 6 N -0.91 -26.13 10.64 55.49 0.59 -25.54 16 7 Si 0.91 21.93 29.57 -169.99 -5.03 16.90 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.17 3.33 2.72 -68.03 -0.19 3.15 16 12 H 0.06 1.36 7.86 -51.92 -0.41 0.95 16 13 C -0.13 -2.23 5.15 -26.69 -0.14 -2.37 16 14 C -0.13 -1.63 6.08 -26.61 -0.16 -1.80 16 15 C 0.11 1.15 6.34 -3.71 -0.02 1.13 16 16 N -0.60 -8.37 2.98 -173.03 -0.52 -8.88 16 17 C 0.52 6.96 7.70 -10.98 -0.08 6.87 16 18 O -0.55 -9.29 15.40 5.56 0.09 -9.21 16 19 C -0.15 -1.42 4.23 -27.88 -0.12 -1.53 16 20 C 0.15 1.32 5.80 -4.04 -0.02 1.30 16 21 N -0.36 -3.28 3.68 -61.33 -0.23 -3.51 16 22 C 0.08 0.59 11.43 -17.16 -0.20 0.40 16 23 C -0.19 -1.60 6.65 -39.97 -0.27 -1.86 16 24 Cl -0.05 -0.35 29.30 -51.86 -1.52 -1.87 16 25 C 0.06 0.54 12.02 -17.34 -0.21 0.33 16 26 N -0.28 -2.88 12.42 30.64 0.38 -2.50 16 27 C 0.10 1.68 5.77 -3.93 -0.02 1.66 16 28 H 0.03 0.77 7.41 -51.93 -0.38 0.39 16 29 H 0.04 1.16 7.21 -51.93 -0.37 0.78 16 30 H 0.00 -0.05 6.35 -51.93 -0.33 -0.38 16 31 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 38 H 0.10 0.76 7.94 -51.93 -0.41 0.35 16 39 H 0.11 1.01 7.69 -51.93 -0.40 0.61 16 40 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 41 H 0.11 0.82 8.03 -51.93 -0.42 0.41 16 42 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 44 H 0.09 1.82 7.01 -51.93 -0.36 1.45 16 45 H 0.06 1.13 6.48 -51.93 -0.34 0.79 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -31.99 377.29 -8.85 -40.84 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.64 Total: -1.51 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -1.18 Total: 4.52 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.26 Total: -55.36 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.52 Total: -1.87 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.99 -8.85 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027693039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.239 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds