Wall clock time and date at job start Sat Apr 11 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36927 * 120.00085 * 2 1 4 4 H 1.08006 * 120.00356 * 202.00797 * 3 2 1 5 5 C 1.38814 * 119.99858 * 22.00654 * 3 2 1 6 6 N 1.31619 * 120.00036 * 12.69514 * 5 3 2 7 7 Si 1.86802 * 120.00049 * 192.69072 * 5 3 2 8 8 H 1.48493 * 109.47183 * 90.00140 * 7 5 3 9 9 H 1.48499 * 109.47114 * 210.00334 * 7 5 3 10 10 H 1.48506 * 109.47376 * 330.00267 * 7 5 3 11 11 C 1.46500 * 119.99687 * 180.02562 * 2 1 3 12 12 H 1.09008 * 109.49556 * 179.97438 * 11 2 1 13 13 C 1.53042 * 109.49970 * 299.99505 * 11 2 1 14 14 C 1.53039 * 109.53934 * 181.35384 * 13 11 2 15 15 C 1.53195 * 109.30934 * 298.63338 * 14 13 11 16 16 N 1.46925 * 108.77679 * 54.64032 * 15 14 13 17 17 C 1.34776 * 120.63684 * 126.36118 * 16 15 14 18 18 O 1.21279 * 120.00643 * 179.97438 * 17 16 15 19 19 C 1.50709 * 119.99646 * 0.02562 * 17 16 15 20 20 C 1.52995 * 109.46853 * 179.97438 * 19 17 16 21 21 N 1.46506 * 109.47098 * 179.97438 * 20 19 17 22 22 C 1.35038 * 126.03541 * 125.00251 * 21 20 19 23 23 C 1.35374 * 107.72753 * 179.70688 * 22 21 20 24 24 Cl 1.73602 * 126.04706 * 180.29815 * 23 22 21 25 25 C 1.39934 * 107.90914 * 0.26430 * 23 22 21 26 26 N 1.30849 * 108.20910 * 359.97438 * 25 23 22 27 27 C 1.46929 * 118.73668 * 306.63916 * 16 15 14 28 28 H 1.09000 * 109.47032 * 274.31622 * 1 2 3 29 29 H 1.08994 * 109.47394 * 34.32304 * 1 2 3 30 30 H 1.09005 * 109.47159 * 154.31988 * 1 2 3 31 31 H 0.97000 * 119.99831 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.45709 * 61.32900 * 13 11 2 33 33 H 1.09000 * 109.44670 * 301.36771 * 13 11 2 34 34 H 1.08995 * 109.49906 * 178.68877 * 14 13 11 35 35 H 1.08994 * 109.50141 * 58.58621 * 14 13 11 36 36 H 1.08996 * 109.58995 * 294.84779 * 15 14 13 37 37 H 1.09005 * 109.58149 * 174.41986 * 15 14 13 38 38 H 1.09002 * 109.46939 * 59.99647 * 19 17 16 39 39 H 1.08997 * 109.46923 * 300.00202 * 19 17 16 40 40 H 1.09002 * 109.47071 * 60.00420 * 20 19 17 41 41 H 1.08998 * 109.47620 * 299.99931 * 20 19 17 42 42 H 1.07998 * 126.13817 * 359.96806 * 22 21 20 43 43 H 1.07993 * 125.89771 * 179.97438 * 25 23 22 44 44 H 1.09001 * 109.58593 * 173.14229 * 27 16 15 45 45 H 1.08992 * 109.58819 * 293.57230 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1707 1.2199 -0.3505 5 6 1.5314 2.3442 0.4505 6 7 0.3917 2.2701 1.1046 7 14 2.3171 4.0080 0.1284 8 1 1.8254 4.5455 -1.1656 9 1 1.9573 4.9454 1.2225 10 1 3.7933 3.8560 0.0723 11 6 2.1974 -1.2688 -0.0006 12 1 3.2693 -1.0701 -0.0009 13 6 1.8282 -2.0723 1.2485 14 6 2.6182 -3.3829 1.2660 15 6 2.2509 -4.2123 0.0314 16 7 2.4666 -3.3938 -1.1695 17 6 3.2383 -3.8445 -2.1783 18 8 3.4082 -3.1595 -3.1646 19 6 3.8891 -5.2004 -2.0813 20 6 4.7029 -5.4673 -3.3492 21 7 5.3361 -6.7850 -3.2546 22 6 5.2193 -7.7886 -4.1506 23 6 5.9592 -8.8297 -3.7021 24 17 6.1507 -10.3629 -4.4936 25 6 6.5431 -8.4513 -2.4880 26 7 6.1678 -7.2272 -2.2178 27 6 1.8300 -2.0719 -1.2471 28 1 -0.3633 0.0773 1.0248 29 1 -0.3634 0.8487 -0.5794 30 1 -0.3634 -0.9262 -0.4454 31 1 -0.0401 3.0796 1.4197 32 1 0.7606 -2.2919 1.2366 33 1 2.0695 -1.4910 2.1384 34 1 2.3722 -3.9440 2.1674 35 1 3.6860 -3.1644 1.2529 36 1 1.2035 -4.5085 0.0885 37 1 2.8819 -5.1000 -0.0133 38 1 3.1203 -5.9657 -1.9756 39 1 4.5485 -5.2256 -1.2138 40 1 5.4717 -4.7019 -3.4552 41 1 4.0431 -5.4422 -4.2164 42 1 4.6427 -7.7636 -5.0634 43 1 7.1916 -9.0637 -1.8791 44 1 2.1834 -1.5477 -2.1350 45 1 0.7476 -2.1898 -1.2963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027693039.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:13 Heat of formation + Delta-G solvation = 44.425820 kcal Electronic energy + Delta-G solvation = -27074.193051 eV Core-core repulsion = 23154.492967 eV Total energy + Delta-G solvation = -3919.700084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.27971 -41.28372 -39.03335 -37.35086 -36.80505 -35.33177 -33.98315 -32.89192 -31.79938 -30.80226 -29.95837 -28.07702 -26.79704 -25.58026 -24.74333 -23.06414 -22.20211 -21.95937 -20.95202 -19.83674 -18.90226 -18.68951 -17.69790 -17.15574 -17.11083 -16.69289 -16.08812 -15.75949 -15.62108 -15.39711 -15.30191 -15.09439 -14.64880 -14.48111 -14.39341 -14.20729 -13.84132 -13.75105 -13.65059 -13.41162 -12.88702 -12.84885 -12.71940 -12.52239 -12.42961 -12.30727 -12.25923 -12.11309 -11.94738 -11.80592 -11.71140 -11.43119 -11.40277 -10.94097 -10.67985 -10.58341 -9.73721 -9.41439 -8.78686 -7.85743 -5.33432 0.74237 0.95308 1.43015 1.44832 1.52658 1.54214 1.61052 1.75353 2.02598 2.48689 3.27003 3.38322 3.50845 3.60162 3.78574 3.85407 3.98522 4.00592 4.08066 4.11303 4.23247 4.30856 4.36230 4.39314 4.60558 4.62169 4.68652 4.70613 4.76279 4.79413 4.86242 4.90753 5.01230 5.13638 5.27272 5.38911 5.41864 5.47468 5.49446 5.62059 5.71470 5.81821 6.29803 6.40667 6.53173 7.08113 7.12917 7.84151 8.26020 9.16754 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026287 B = 0.001963 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.899629 B =14259.197384 C =14652.219623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.610 5.610 3 C -0.264 4.264 4 H 0.062 0.938 5 C -0.050 4.050 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.272 1.272 11 C 0.166 3.834 12 H 0.043 0.957 13 C -0.123 4.123 14 C -0.124 4.124 15 C 0.106 3.894 16 N -0.604 5.604 17 C 0.515 3.485 18 O -0.587 6.587 19 C -0.135 4.135 20 C 0.153 3.847 21 N -0.366 5.366 22 C 0.081 3.919 23 C -0.204 4.204 24 Cl -0.042 7.042 25 C 0.063 3.937 26 N -0.310 5.310 27 C 0.113 3.887 28 H 0.007 0.993 29 H 0.013 0.987 30 H 0.031 0.969 31 H 0.249 0.751 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.123 0.877 42 H 0.210 0.790 43 H 0.210 0.790 44 H 0.059 0.941 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.493 -27.042 -6.760 28.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.333 5.333 3 C -0.394 4.394 4 H 0.080 0.920 5 C -0.245 4.245 6 N -0.581 5.581 7 Si 0.795 3.205 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.197 1.197 11 C 0.059 3.941 12 H 0.061 0.939 13 C -0.163 4.163 14 C -0.163 4.163 15 C -0.016 4.016 16 N -0.336 5.336 17 C 0.304 3.696 18 O -0.467 6.467 19 C -0.175 4.175 20 C 0.032 3.968 21 N -0.148 5.148 22 C -0.067 4.067 23 C -0.243 4.243 24 Cl -0.014 7.014 25 C -0.124 4.124 26 N -0.132 5.132 27 C -0.011 4.011 28 H 0.025 0.975 29 H 0.032 0.968 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.134 0.866 38 H 0.142 0.858 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.141 0.859 42 H 0.227 0.773 43 H 0.227 0.773 44 H 0.078 0.922 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.501 -25.547 -6.449 27.396 hybrid contribution 0.081 0.857 -0.559 1.026 sum 7.581 -24.690 -7.007 26.762 Atomic orbital electron populations 1.20492 0.82495 0.95792 0.97628 1.44091 1.02168 1.00984 1.86036 1.19475 0.97722 0.86751 1.35467 0.91983 1.25708 0.98576 1.01553 0.98705 1.70217 1.19691 1.27415 1.40787 0.85279 0.78265 0.80027 0.76947 1.21365 1.21778 1.19716 1.20632 0.94801 0.85365 0.93346 0.93853 1.21945 1.00250 0.96330 0.97777 1.21890 1.00054 0.95314 0.99002 1.22069 1.03469 0.93659 0.82379 1.48236 1.48518 1.17775 1.19047 1.20901 0.78009 0.88676 0.81991 1.90712 1.63037 1.60224 1.32773 1.21806 1.01238 0.93859 1.00626 1.21521 0.96785 0.79054 0.99474 1.48616 1.37233 1.12484 1.16465 1.22788 0.99891 0.86925 0.97109 1.20913 1.11973 0.91639 0.99753 1.98332 1.97066 1.26609 1.79418 1.24303 0.99627 0.92923 0.95533 1.77471 1.11294 1.13321 1.11082 1.21816 0.97133 0.82883 0.99317 0.97498 0.96787 0.95039 0.94191 0.92266 0.94155 0.88051 0.92051 0.89520 0.86613 0.85814 0.86666 0.89685 0.85925 0.77318 0.77319 0.92193 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.83 8.03 127.77 1.03 9.86 16 2 N -0.61 -30.60 2.82 -703.13 -1.98 -32.58 16 3 C -0.26 -14.83 9.60 84.04 0.81 -14.02 16 4 H 0.06 3.48 7.81 -2.91 -0.02 3.46 16 5 C -0.05 -2.85 5.10 84.86 0.43 -2.42 16 6 N -0.93 -55.37 10.64 21.65 0.23 -55.14 16 7 Si 0.97 46.05 29.57 68.60 2.03 48.08 16 8 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 9 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 C 0.17 6.66 2.72 44.93 0.12 6.78 16 12 H 0.04 1.89 7.86 -2.38 -0.02 1.87 16 13 C -0.12 -4.07 5.15 30.62 0.16 -3.91 16 14 C -0.12 -2.70 6.08 30.67 0.19 -2.52 16 15 C 0.11 1.88 6.34 86.36 0.55 2.43 16 16 N -0.60 -15.66 2.98 -819.72 -2.44 -18.10 16 17 C 0.52 13.01 7.70 87.66 0.67 13.68 16 18 O -0.59 -19.84 15.40 -3.03 -0.05 -19.88 16 19 C -0.14 -2.11 4.23 29.85 0.13 -1.98 16 20 C 0.15 2.38 5.80 86.38 0.50 2.88 16 21 N -0.37 -5.80 3.68 -347.94 -1.28 -7.08 16 22 C 0.08 1.04 11.43 83.54 0.95 2.00 16 23 C -0.20 -2.93 6.65 22.02 0.15 -2.78 16 24 Cl -0.04 -0.56 29.30 -2.72 -0.08 -0.64 16 25 C 0.06 0.94 12.02 85.25 1.02 1.97 16 26 N -0.31 -5.76 12.42 -56.98 -0.71 -6.46 16 27 C 0.11 3.95 5.77 86.22 0.50 4.45 16 28 H 0.01 0.36 7.41 -2.39 -0.02 0.34 16 29 H 0.01 0.73 7.21 -2.39 -0.02 0.71 16 30 H 0.03 1.29 6.35 -2.38 -0.02 1.28 16 31 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.06 1.92 7.72 -2.39 -0.02 1.90 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.12 1.30 5.93 -2.38 -0.01 1.29 16 38 H 0.12 1.36 7.94 -2.39 -0.02 1.34 16 39 H 0.12 1.74 7.69 -2.39 -0.02 1.73 16 40 H 0.08 1.60 8.10 -2.39 -0.02 1.58 16 41 H 0.12 1.57 8.03 -2.39 -0.02 1.55 16 42 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 43 H 0.21 2.01 8.06 -2.91 -0.02 1.98 16 44 H 0.06 2.47 7.01 -2.39 -0.02 2.45 16 45 H 0.07 2.29 6.48 -2.39 -0.02 2.27 16 Total: -1.00 -72.52 377.29 3.92 -68.59 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 0.99 Total: 6.80 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 7.21 Total: 16.42 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -6.18 Total: -119.37 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.88 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -72.52 3.92 -68.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027693039.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.021 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds