Wall clock time and date at job start Sat Apr 11 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34264 * 125.75440 * 2 1 4 4 C 1.38047 * 107.41695 * 180.14276 * 3 2 1 5 5 C 1.47427 * 126.41421 * 179.87069 * 4 3 2 6 6 O 1.21605 * 119.99835 * 137.17349 * 5 4 3 7 7 N 1.34774 * 119.99828 * 317.16831 * 5 4 3 8 8 C 1.47168 * 120.70518 * 175.01122 * 7 5 4 9 9 C 1.53884 * 108.03452 * 132.73806 * 8 7 5 10 10 H 1.09001 * 112.09720 * 181.90403 * 9 8 7 11 11 C 1.54552 * 108.36694 * 306.24823 * 9 8 7 12 12 C 1.54829 * 104.74081 * 89.17276 * 11 9 8 13 13 C 1.54546 * 104.74768 * 359.97438 * 12 11 9 14 14 H 1.08999 * 112.68016 * 146.80732 * 13 12 11 15 15 C 1.47159 * 120.71201 * 354.98913 * 7 5 4 16 16 N 1.48309 * 104.35404 * 24.83009 * 13 12 11 17 17 C 1.36936 * 128.07778 * 139.08316 * 16 13 12 18 18 H 1.08000 * 120.00309 * 40.33386 * 17 16 13 19 19 C 1.38811 * 119.99897 * 220.33265 * 17 16 13 20 20 N 1.31616 * 120.00154 * 190.16906 * 19 17 16 21 21 Si 1.86806 * 119.99990 * 10.16915 * 19 17 16 22 22 H 1.48494 * 109.46960 * 272.44131 * 21 19 17 23 23 H 1.48494 * 109.47039 * 32.44264 * 21 19 17 24 24 H 1.48504 * 109.46963 * 152.44169 * 21 19 17 25 25 C 1.41294 * 107.16760 * 359.61588 * 4 3 2 26 26 C 1.50700 * 125.98613 * 180.20786 * 25 4 3 27 27 F 1.39907 * 109.46953 * 299.99225 * 26 25 4 28 28 F 1.39894 * 109.47575 * 59.98926 * 26 25 4 29 29 N 1.30442 * 108.02602 * 0.23282 * 25 4 3 30 30 H 1.08997 * 109.47460 * 270.31695 * 1 2 3 31 31 H 1.09005 * 109.47320 * 30.31300 * 1 2 3 32 32 H 1.08997 * 109.47593 * 150.31261 * 1 2 3 33 33 H 1.07998 * 126.29343 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.75230 * 13.09852 * 8 7 5 35 35 H 1.09004 * 109.78819 * 252.39447 * 8 7 5 36 36 H 1.09002 * 110.36061 * 208.13883 * 11 9 8 37 37 H 1.08994 * 110.36047 * 330.45367 * 11 9 8 38 38 H 1.09006 * 110.30782 * 241.24973 * 12 11 9 39 39 H 1.08996 * 110.61714 * 118.91204 * 12 11 9 40 40 H 1.09000 * 109.75167 * 346.89207 * 15 7 5 41 41 H 1.09001 * 109.75054 * 107.58080 * 15 7 5 42 42 H 0.96998 * 120.00040 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.47037 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6553 -0.0033 5 6 4.7638 1.5061 -0.0072 6 8 5.7080 1.2267 0.7064 7 7 4.8179 2.5935 -0.8016 8 6 5.9646 3.5138 -0.7386 9 6 6.4265 3.7986 -2.1786 10 1 7.2990 4.4513 -2.2078 11 6 6.6847 2.4475 -2.8834 12 6 5.3213 2.0621 -3.5077 13 6 4.3703 3.2168 -3.1196 14 1 3.6176 3.4158 -3.8825 15 6 3.7320 2.8856 -1.7508 16 7 5.2692 4.3765 -2.9035 17 6 5.0736 5.6784 -3.2803 18 1 4.0958 6.1269 -3.1856 19 6 6.1323 6.4216 -3.7839 20 7 6.0011 7.7196 -3.9579 21 14 7.7432 5.5796 -4.2148 22 1 8.6108 5.5253 -3.0109 23 1 7.4688 4.1997 -4.6898 24 1 8.4304 6.3445 -5.2862 25 6 3.5310 -0.7574 0.0038 26 6 4.7321 -1.6675 0.0077 27 9 5.5014 -1.4293 -1.1363 28 9 5.5028 -1.4178 1.1482 29 7 2.2826 -1.1356 0.0057 30 1 -0.3634 0.0057 1.0276 31 1 -0.3634 0.8872 -0.5187 32 1 -0.3634 -0.8927 -0.5089 33 1 1.9166 2.1170 -0.0004 34 1 6.7763 3.0530 -0.1757 35 1 5.6647 4.4446 -0.2572 36 1 7.4413 2.5631 -3.6594 37 1 6.9952 1.6950 -2.1586 38 1 4.9655 1.1211 -3.0880 39 1 5.4034 1.9860 -4.5919 40 1 3.0846 2.0142 -1.8495 41 1 3.1516 3.7372 -1.3957 42 1 6.7408 8.2389 -4.3102 43 1 4.4010 -2.7060 0.0126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029341418.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:16 Heat of formation + Delta-G solvation = -25.412716 kcal Electronic energy + Delta-G solvation = -31728.533737 eV Core-core repulsion = 27254.008547 eV Total energy + Delta-G solvation = -4474.525190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.96072 -47.99778 -42.69106 -41.36004 -39.23715 -35.53702 -34.80265 -34.33779 -32.75145 -31.71009 -31.46062 -29.44480 -28.09026 -26.54133 -25.69303 -25.27587 -23.33676 -22.08492 -21.50514 -21.25162 -20.34598 -18.94403 -18.27773 -18.21404 -18.10174 -17.98411 -17.31266 -17.01050 -16.65081 -16.42983 -16.33245 -15.27815 -15.25676 -15.11262 -14.88201 -14.77446 -14.52354 -14.36314 -14.34965 -14.05682 -13.95887 -13.67637 -13.59726 -13.41887 -13.28717 -13.00657 -12.80875 -12.56629 -12.46467 -12.25260 -12.02284 -11.83390 -11.60533 -11.59544 -11.26077 -11.00699 -10.77696 -10.63803 -9.87330 -9.73455 -8.66738 -8.17909 -5.65521 0.44420 0.72862 1.15448 1.31108 1.40682 1.51020 1.89293 2.17055 2.41717 2.60472 3.06393 3.13031 3.20038 3.36562 3.62800 3.82406 3.89903 3.92427 3.97584 4.05686 4.09601 4.13538 4.28484 4.34333 4.42558 4.46334 4.56518 4.60568 4.67938 4.75567 4.78563 4.87441 4.88832 4.91141 5.00815 5.04935 5.20072 5.35314 5.57963 5.73332 5.86845 6.17978 6.19793 6.53292 6.72877 7.21886 7.48710 8.26043 9.00239 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.017095 B = 0.004155 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.538004 B = 6736.553248 C = 7562.954386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.339 5.339 3 C 0.120 3.880 4 C -0.281 4.281 5 C 0.585 3.415 6 O -0.576 6.576 7 N -0.587 5.587 8 C 0.116 3.884 9 C 0.114 3.886 10 H 0.061 0.939 11 C -0.126 4.126 12 C -0.113 4.113 13 C 0.130 3.870 14 H 0.097 0.903 15 C 0.104 3.896 16 N -0.610 5.610 17 C -0.223 4.223 18 H 0.058 0.942 19 C -0.015 4.015 20 N -0.954 5.954 21 Si 0.934 3.066 22 H -0.282 1.282 23 H -0.243 1.243 24 H -0.313 1.313 25 C 0.028 3.972 26 C 0.348 3.652 27 F -0.202 7.202 28 F -0.195 7.195 29 N -0.270 5.270 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.105 0.895 33 H 0.223 0.777 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.262 0.738 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.667 -19.614 6.803 24.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.118 5.118 3 C -0.031 4.031 4 C -0.296 4.296 5 C 0.374 3.626 6 O -0.456 6.456 7 N -0.318 5.318 8 C -0.009 4.009 9 C 0.008 3.992 10 H 0.079 0.921 11 C -0.165 4.165 12 C -0.152 4.152 13 C 0.024 3.976 14 H 0.115 0.885 15 C -0.020 4.020 16 N -0.334 5.334 17 C -0.352 4.352 18 H 0.075 0.925 19 C -0.212 4.212 20 N -0.598 5.598 21 Si 0.764 3.236 22 H -0.210 1.210 23 H -0.166 1.166 24 H -0.242 1.242 25 C -0.139 4.139 26 C 0.293 3.707 27 F -0.183 7.183 28 F -0.177 7.177 29 N -0.094 5.094 30 H 0.117 0.883 31 H 0.145 0.855 32 H 0.124 0.876 33 H 0.239 0.761 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.097 -20.469 7.067 25.839 hybrid contribution 1.922 1.287 -0.219 2.324 sum -12.175 -19.182 6.848 23.730 Atomic orbital electron populations 1.22605 0.69609 1.07464 1.05930 1.48739 1.08756 1.02305 1.52046 1.23544 0.88474 0.95354 0.95750 1.20041 0.93957 0.93033 1.22574 1.17614 0.86097 0.79731 0.79134 1.90771 1.39162 1.72026 1.43659 1.47872 1.21927 1.23967 1.38076 1.22013 0.89017 0.92242 0.97587 1.22266 0.91760 0.93869 0.91331 0.92083 1.22621 0.98387 0.96280 0.99204 1.22445 0.94737 0.97975 1.00072 1.22452 0.93541 0.86479 0.95153 0.88477 1.22733 0.88584 1.01443 0.89228 1.45367 1.20380 1.03611 1.63999 1.18360 0.96836 0.85196 1.34824 0.92469 1.26084 1.01782 0.95828 0.97505 1.69863 1.33468 1.06695 1.49796 0.86011 0.80608 0.79885 0.77104 1.20965 1.16627 1.24172 1.22781 0.94364 0.93486 1.03262 1.19771 0.80083 0.99628 0.71230 1.93017 1.77429 1.96410 1.51445 1.93057 1.77090 1.96189 1.51338 1.76948 0.99820 1.09323 1.23307 0.88323 0.85491 0.87623 0.76094 0.90504 0.92240 0.92665 0.91788 0.90967 0.91734 0.87813 0.90720 0.92860 0.81570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.31 11.44 127.77 1.46 1.77 16 2 N -0.34 -4.97 3.98 -367.79 -1.46 -6.44 16 3 C 0.12 2.05 9.24 84.28 0.78 2.83 16 4 C -0.28 -7.36 5.10 -20.15 -0.10 -7.46 16 5 C 0.59 19.59 7.43 86.66 0.64 20.24 16 6 O -0.58 -23.67 15.02 -4.05 -0.06 -23.73 16 7 N -0.59 -19.14 2.28 -817.39 -1.87 -21.01 16 8 C 0.12 4.41 5.94 86.55 0.51 4.92 16 9 C 0.11 4.73 2.84 45.47 0.13 4.86 16 10 H 0.06 2.80 4.41 -2.39 -0.01 2.79 16 11 C -0.13 -4.68 5.84 31.75 0.19 -4.49 16 12 C -0.11 -3.69 6.24 31.74 0.20 -3.50 16 13 C 0.13 4.40 4.32 45.72 0.20 4.59 16 14 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 15 C 0.10 2.85 4.91 86.81 0.43 3.28 16 16 N -0.61 -26.63 2.27 -635.37 -1.44 -28.07 16 17 C -0.22 -11.87 10.72 84.03 0.90 -10.97 16 18 H 0.06 3.30 8.06 -2.91 -0.02 3.27 16 19 C -0.02 -0.87 5.50 84.86 0.47 -0.40 16 20 N -0.95 -58.14 13.97 21.65 0.30 -57.84 16 21 Si 0.93 45.67 24.73 68.60 1.70 47.37 16 22 H -0.28 -13.57 6.60 99.48 0.66 -12.91 16 23 H -0.24 -11.12 5.37 99.48 0.53 -10.58 16 24 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 25 C 0.03 0.71 6.70 43.52 0.29 1.00 16 26 C 0.35 8.55 5.47 71.24 0.39 8.94 16 27 F -0.20 -5.82 17.32 44.97 0.78 -5.04 16 28 F -0.20 -6.04 15.96 44.97 0.72 -5.32 16 29 N -0.27 -5.62 12.50 -46.68 -0.58 -6.20 16 30 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.13 -0.20 8.14 -2.38 -0.02 -0.21 16 32 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.22 2.29 7.53 -2.91 -0.02 2.27 16 34 H 0.08 2.98 7.08 -2.39 -0.02 2.96 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 2.10 6.49 -2.39 -0.02 2.08 16 37 H 0.06 2.35 7.86 -2.39 -0.02 2.33 16 38 H 0.07 2.16 7.87 -2.38 -0.02 2.14 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.10 2.20 5.33 -2.39 -0.01 2.19 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 43 H 0.17 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -77.83 346.85 5.39 -72.44 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.83 Total: 8.23 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: 6.48 Total: 25.60 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -5.06 Total: -119.56 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.06 Total: -23.73 kcal Atomic # 9 Polarization: -11.85 SS G_CDS: 1.50 Total: -10.36 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.70 Total: 47.37 kcal Total: -77.83 5.39 -72.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029341418.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.028 kcal (2) G-P(sol) polarization free energy of solvation -77.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds