Wall clock time and date at job start Sat Apr 11 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46873 * 2 1 4 4 C 1.34779 * 119.99906 * 275.31170 * 3 2 1 5 5 O 1.21477 * 119.99847 * 3.81311 * 4 3 2 6 6 C 1.48452 * 120.00223 * 183.80582 * 4 3 2 7 7 C 1.39538 * 120.55122 * 173.06428 * 6 4 3 8 8 C 1.38763 * 118.26147 * 179.75931 * 7 6 4 9 9 C 1.50699 * 120.42118 * 180.23636 * 8 7 6 10 10 F 1.39895 * 109.47647 * 300.28700 * 9 8 7 11 11 F 1.39903 * 109.47050 * 60.29007 * 9 8 7 12 12 N 1.32201 * 119.15047 * 0.51995 * 8 7 6 13 13 C 1.31885 * 121.03256 * 359.74331 * 12 8 7 14 14 N 1.31578 * 121.91932 * 359.97438 * 13 12 8 15 15 C 1.46499 * 120.00136 * 95.32152 * 3 2 1 16 16 H 1.09010 * 110.63872 * 230.92313 * 15 3 2 17 17 C 1.55156 * 110.72337 * 107.59289 * 15 3 2 18 18 C 1.54911 * 101.58050 * 277.13484 * 17 15 3 19 19 N 1.47429 * 104.82874 * 322.99283 * 18 17 15 20 20 C 1.36939 * 125.64440 * 204.16177 * 19 18 17 21 21 H 1.07998 * 120.00149 * 325.34291 * 20 19 18 22 22 C 1.38809 * 119.99906 * 145.33750 * 20 19 18 23 23 N 1.31622 * 120.00129 * 168.75728 * 22 20 19 24 24 Si 1.86800 * 120.00000 * 348.76316 * 22 20 19 25 25 H 1.48501 * 109.47195 * 86.16268 * 24 22 20 26 26 H 1.48507 * 109.47109 * 206.16304 * 24 22 20 27 27 H 1.48495 * 109.46922 * 326.15964 * 24 22 20 28 28 C 1.47019 * 108.70582 * 24.12733 * 19 18 17 29 29 H 1.09002 * 109.46828 * 60.00813 * 1 2 3 30 30 H 1.08999 * 109.47154 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47460 * 300.00773 * 1 2 3 32 32 H 1.09002 * 109.46828 * 119.99187 * 2 1 3 33 33 H 1.08998 * 109.47460 * 239.99227 * 2 1 3 34 34 H 1.08006 * 120.86691 * 0.02562 * 7 6 4 35 35 H 1.09001 * 109.46931 * 180.28342 * 9 8 7 36 36 H 1.08002 * 119.03829 * 180.02562 * 13 12 8 37 37 H 1.09002 * 111.00503 * 35.20972 * 17 15 3 38 38 H 1.09001 * 111.00320 * 159.06291 * 17 15 3 39 39 H 1.08998 * 110.36900 * 204.15581 * 18 17 15 40 40 H 1.09004 * 110.36603 * 81.82525 * 18 17 15 41 41 H 0.97003 * 120.00132 * 180.02562 * 23 22 20 42 42 H 1.09006 * 109.88157 * 239.52187 * 28 19 18 43 43 H 1.08995 * 109.88195 * 118.35864 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1410 2.0526 -1.1622 5 8 1.7818 1.5374 -2.2021 6 6 2.7149 3.4216 -1.1716 7 6 2.9810 4.0709 -2.3777 8 6 3.5127 5.3518 -2.3310 9 6 3.8138 6.0999 -3.6041 10 9 4.7414 5.3769 -4.3617 11 9 2.6350 6.2611 -4.3402 12 7 3.7570 5.9052 -1.1555 13 6 3.4986 5.2611 -0.0340 14 7 2.9894 4.0479 -0.0300 15 6 2.3733 2.0326 1.2632 16 1 1.8805 3.0013 1.3478 17 6 3.9124 2.1826 1.3900 18 6 4.3185 0.7847 1.9199 19 7 3.2327 0.3999 2.8398 20 6 3.3414 -0.4903 3.8747 21 1 3.9891 -1.3495 3.7821 22 6 2.6194 -0.2881 5.0428 23 7 2.5467 -1.2435 5.9453 24 14 1.7506 1.3397 5.3340 25 1 0.4052 1.3019 4.7065 26 1 1.6095 1.5714 6.7941 27 1 2.5464 2.4399 4.7329 28 6 2.0140 1.1306 2.4626 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 2.7744 3.5907 -3.3229 35 1 4.2271 7.0788 -3.3612 36 1 3.7104 5.7440 0.9085 37 1 4.3671 2.3797 0.4191 38 1 4.1713 2.9623 2.1064 39 1 5.2664 0.8425 2.4549 40 1 4.3889 0.0730 1.0973 41 1 2.0418 -1.1023 6.7615 42 1 1.6751 1.7428 3.2985 43 1 1.2332 0.4262 2.1759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033874681.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:34 Heat of formation + Delta-G solvation = -16.668799 kcal Electronic energy + Delta-G solvation = -30803.466108 eV Core-core repulsion = 26329.320082 eV Total energy + Delta-G solvation = -4474.146026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.55876 -47.54535 -41.83493 -39.97802 -37.96624 -35.01348 -34.73639 -32.91975 -32.41193 -31.00191 -29.19633 -28.23737 -28.05969 -25.77216 -24.35937 -24.08520 -22.78462 -21.67205 -20.31703 -19.74926 -18.80881 -17.95433 -17.80636 -17.38109 -17.04843 -16.54442 -16.31585 -15.89420 -15.88205 -15.37040 -15.31822 -14.73914 -14.49230 -14.38239 -13.90759 -13.89560 -13.54281 -13.44041 -13.24446 -12.96199 -12.59037 -12.50808 -12.02181 -11.90386 -11.84176 -11.54902 -11.41861 -11.22374 -11.19091 -10.88696 -10.71657 -10.69035 -10.45567 -10.33416 -10.25061 -10.01381 -9.56975 -9.46399 -8.68454 -8.56812 -6.91488 -6.03195 -3.49847 -0.00035 0.23297 2.45435 2.57937 2.74930 3.25556 3.31077 3.37729 3.41990 3.50925 3.58036 3.68842 4.08593 4.33422 4.42097 4.44250 4.44953 4.80236 4.94110 4.98984 5.04045 5.26159 5.30296 5.32494 5.47904 5.55993 5.65334 5.68670 5.86937 5.93479 6.04006 6.09039 6.19952 6.21503 6.30659 6.42424 6.48229 6.58131 6.64226 6.74717 7.32200 7.41835 7.81632 7.95410 8.27351 8.76971 9.59245 10.14025 11.12927 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.018682 B = 0.003410 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.400128 B = 8208.663874 C = 8874.699818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 N -0.566 5.566 4 C 0.563 3.437 5 O -0.528 6.528 6 C 0.144 3.856 7 C -0.133 4.133 8 C 0.095 3.905 9 C 0.329 3.671 10 F -0.187 7.187 11 F -0.187 7.187 12 N -0.482 5.482 13 C 0.295 3.705 14 N -0.461 5.461 15 C 0.133 3.867 16 H 0.104 0.896 17 C -0.120 4.120 18 C 0.126 3.874 19 N -0.607 5.607 20 C -0.247 4.247 21 H 0.086 0.914 22 C 0.031 3.969 23 N -0.910 5.910 24 Si 0.898 3.102 25 H -0.286 1.286 26 H -0.303 1.303 27 H -0.271 1.271 28 C 0.101 3.899 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.165 0.835 35 H 0.140 0.860 36 H 0.213 0.787 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.024 0.976 41 H 0.265 0.735 42 H 0.037 0.963 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.884 15.195 -16.412 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.022 4.022 3 N -0.296 5.296 4 C 0.348 3.652 5 O -0.405 6.405 6 C -0.005 4.005 7 C -0.156 4.156 8 C -0.055 4.055 9 C 0.274 3.726 10 F -0.168 7.168 11 F -0.169 7.169 12 N -0.196 5.196 13 C 0.008 3.992 14 N -0.177 5.177 15 C 0.029 3.971 16 H 0.122 0.878 17 C -0.159 4.159 18 C 0.001 3.999 19 N -0.335 5.335 20 C -0.375 4.375 21 H 0.104 0.896 22 C -0.169 4.169 23 N -0.552 5.552 24 Si 0.730 3.270 25 H -0.213 1.213 26 H -0.232 1.232 27 H -0.197 1.197 28 C -0.023 4.023 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.183 0.817 35 H 0.157 0.843 36 H 0.229 0.771 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.808 15.151 -15.860 21.949 hybrid contribution -0.703 0.509 -0.390 0.951 sum 0.106 15.660 -16.250 22.568 Atomic orbital electron populations 1.22133 0.95668 1.02485 1.02073 1.21749 0.94604 0.81162 1.04696 1.47994 1.61362 1.14186 1.06073 1.17658 0.79591 0.83709 0.84225 1.90790 1.50001 1.67996 1.31694 1.21798 0.94115 0.95650 0.88914 1.22708 0.96493 0.94917 1.01492 1.22005 0.96194 0.92635 0.94630 1.20087 0.76008 0.95602 0.80920 1.93067 1.65627 1.80704 1.77405 1.93066 1.49033 1.96234 1.78525 1.67951 1.15684 1.37654 0.98360 1.25228 0.90476 0.87184 0.96340 1.69120 1.09819 1.09706 1.29023 1.22436 0.96749 0.95961 0.81934 0.87836 1.23032 0.94297 0.98626 0.99950 1.21823 0.92837 0.92265 0.92959 1.44672 1.03639 1.50362 1.34804 1.18579 1.27799 1.01230 0.89906 0.89604 1.25388 0.99241 0.97182 0.95114 1.69749 1.43256 1.32177 1.10013 0.86694 0.79328 0.85623 0.75388 1.21348 1.23154 1.19733 1.22197 0.92327 0.94555 0.93253 0.92520 0.91328 0.92252 0.87187 0.90395 0.81724 0.84306 0.77120 0.92580 0.90346 0.93180 0.95834 0.92536 0.94599 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.91 37.16 0.37 -1.95 16 2 C 0.10 1.54 5.29 -4.04 -0.02 1.52 16 3 N -0.57 -8.78 2.59 -164.91 -0.43 -9.21 16 4 C 0.56 8.53 7.41 -12.05 -0.09 8.44 16 5 O -0.53 -8.92 16.13 5.39 0.09 -8.84 16 6 C 0.14 1.85 5.96 -82.64 -0.49 1.36 16 7 C -0.13 -1.50 9.32 -38.90 -0.36 -1.86 16 8 C 0.09 0.92 6.31 -82.24 -0.52 0.40 16 9 C 0.33 2.52 5.58 36.01 0.20 2.72 16 10 F -0.19 -1.69 17.26 2.25 0.04 -1.65 16 11 F -0.19 -1.68 17.27 2.25 0.04 -1.64 16 12 N -0.48 -4.61 10.35 -10.81 -0.11 -4.72 16 13 C 0.30 2.80 12.27 -92.26 -1.13 1.66 16 14 N -0.46 -5.45 4.49 -11.14 -0.05 -5.50 16 15 C 0.13 2.14 2.74 -66.10 -0.18 1.96 16 16 H 0.10 1.57 6.51 -51.92 -0.34 1.23 16 17 C -0.12 -1.87 5.02 -24.58 -0.12 -1.99 16 18 C 0.13 2.39 7.21 -2.53 -0.02 2.37 16 19 N -0.61 -13.68 2.71 -170.07 -0.46 -14.14 16 20 C -0.25 -6.69 10.57 -15.06 -0.16 -6.85 16 21 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 22 C 0.03 0.86 5.49 -17.43 -0.10 0.77 16 23 N -0.91 -27.18 13.97 55.49 0.78 -26.40 16 24 Si 0.90 21.80 24.48 -169.99 -4.16 17.64 16 25 H -0.29 -6.74 7.03 56.52 0.40 -6.34 16 26 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.27 -6.32 6.81 56.52 0.38 -5.93 16 28 C 0.10 2.03 4.65 -3.07 -0.01 2.01 16 29 H 0.06 0.80 8.12 -51.93 -0.42 0.37 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.86 7.29 -51.93 -0.38 0.48 16 32 H 0.11 1.93 5.76 -51.93 -0.30 1.63 16 33 H 0.08 1.18 7.64 -51.93 -0.40 0.79 16 34 H 0.17 1.79 7.75 -52.48 -0.41 1.38 16 35 H 0.14 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.21 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.06 0.82 6.33 -51.93 -0.33 0.49 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.04 0.79 3.06 -51.93 -0.16 0.63 16 43 H 0.05 1.08 4.71 -51.93 -0.24 0.84 16 LS Contribution 350.23 15.07 5.28 5.28 Total: -1.00 -31.34 350.23 -6.72 -38.06 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.09 Total: 0.58 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -2.64 Total: 10.55 kcal Atomic # 7 Polarization: -59.70 SS G_CDS: -0.28 Total: -59.98 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 9 Polarization: -3.37 SS G_CDS: 0.08 Total: -3.29 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.16 Total: 17.64 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.34 -6.72 -38.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033874681.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.392 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds