Wall clock time and date at job start Sat Apr 11 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46873 * 2 1 4 4 C 1.34779 * 119.99906 * 275.31170 * 3 2 1 5 5 O 1.21477 * 119.99847 * 3.81311 * 4 3 2 6 6 C 1.48452 * 120.00223 * 183.80582 * 4 3 2 7 7 C 1.39538 * 120.55122 * 173.06428 * 6 4 3 8 8 C 1.38763 * 118.26147 * 179.75931 * 7 6 4 9 9 C 1.50699 * 120.42118 * 180.23636 * 8 7 6 10 10 F 1.39895 * 109.47647 * 300.28700 * 9 8 7 11 11 F 1.39903 * 109.47050 * 60.29007 * 9 8 7 12 12 N 1.32201 * 119.15047 * 0.51995 * 8 7 6 13 13 C 1.31885 * 121.03256 * 359.74331 * 12 8 7 14 14 N 1.31578 * 121.91932 * 359.97438 * 13 12 8 15 15 C 1.46499 * 120.00136 * 95.32152 * 3 2 1 16 16 H 1.09010 * 110.63872 * 230.92313 * 15 3 2 17 17 C 1.55156 * 110.72337 * 107.59289 * 15 3 2 18 18 C 1.54911 * 101.58050 * 277.13484 * 17 15 3 19 19 N 1.47429 * 104.82874 * 322.99283 * 18 17 15 20 20 C 1.36939 * 125.64440 * 204.16177 * 19 18 17 21 21 H 1.07998 * 120.00149 * 325.34291 * 20 19 18 22 22 C 1.38809 * 119.99906 * 145.33750 * 20 19 18 23 23 N 1.31622 * 120.00129 * 168.75728 * 22 20 19 24 24 Si 1.86800 * 120.00000 * 348.76316 * 22 20 19 25 25 H 1.48501 * 109.47195 * 86.16268 * 24 22 20 26 26 H 1.48507 * 109.47109 * 206.16304 * 24 22 20 27 27 H 1.48495 * 109.46922 * 326.15964 * 24 22 20 28 28 C 1.47019 * 108.70582 * 24.12733 * 19 18 17 29 29 H 1.09002 * 109.46828 * 60.00813 * 1 2 3 30 30 H 1.08999 * 109.47154 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47460 * 300.00773 * 1 2 3 32 32 H 1.09002 * 109.46828 * 119.99187 * 2 1 3 33 33 H 1.08998 * 109.47460 * 239.99227 * 2 1 3 34 34 H 1.08006 * 120.86691 * 0.02562 * 7 6 4 35 35 H 1.09001 * 109.46931 * 180.28342 * 9 8 7 36 36 H 1.08002 * 119.03829 * 180.02562 * 13 12 8 37 37 H 1.09002 * 111.00503 * 35.20972 * 17 15 3 38 38 H 1.09001 * 111.00320 * 159.06291 * 17 15 3 39 39 H 1.08998 * 110.36900 * 204.15581 * 18 17 15 40 40 H 1.09004 * 110.36603 * 81.82525 * 18 17 15 41 41 H 0.97003 * 120.00132 * 180.02562 * 23 22 20 42 42 H 1.09006 * 109.88157 * 239.52187 * 28 19 18 43 43 H 1.08995 * 109.88195 * 118.35864 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1410 2.0526 -1.1622 5 8 1.7818 1.5374 -2.2021 6 6 2.7149 3.4216 -1.1716 7 6 2.9810 4.0709 -2.3777 8 6 3.5127 5.3518 -2.3310 9 6 3.8138 6.0999 -3.6041 10 9 4.7414 5.3769 -4.3617 11 9 2.6350 6.2611 -4.3402 12 7 3.7570 5.9052 -1.1555 13 6 3.4986 5.2611 -0.0340 14 7 2.9894 4.0479 -0.0300 15 6 2.3733 2.0326 1.2632 16 1 1.8805 3.0013 1.3478 17 6 3.9124 2.1826 1.3900 18 6 4.3185 0.7847 1.9199 19 7 3.2327 0.3999 2.8398 20 6 3.3414 -0.4903 3.8747 21 1 3.9891 -1.3495 3.7821 22 6 2.6194 -0.2881 5.0428 23 7 2.5467 -1.2435 5.9453 24 14 1.7506 1.3397 5.3340 25 1 0.4052 1.3019 4.7065 26 1 1.6095 1.5714 6.7941 27 1 2.5464 2.4399 4.7329 28 6 2.0140 1.1306 2.4626 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 2.7744 3.5907 -3.3229 35 1 4.2271 7.0788 -3.3612 36 1 3.7104 5.7440 0.9085 37 1 4.3671 2.3797 0.4191 38 1 4.1713 2.9623 2.1064 39 1 5.2664 0.8425 2.4549 40 1 4.3889 0.0730 1.0973 41 1 2.0418 -1.1023 6.7615 42 1 1.6751 1.7428 3.2985 43 1 1.2332 0.4262 2.1759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033874681.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:34 Heat of formation + Delta-G solvation = -35.088201 kcal Electronic energy + Delta-G solvation = -30804.264833 eV Core-core repulsion = 26329.320082 eV Total energy + Delta-G solvation = -4474.944751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.18966 -48.18629 -42.73357 -41.14003 -39.37948 -36.38970 -35.67440 -34.32802 -33.71437 -32.41196 -30.72859 -29.71781 -28.83124 -26.75441 -26.13260 -24.87944 -23.93663 -22.97511 -21.99597 -20.79798 -19.56074 -19.07813 -18.93859 -18.44351 -18.19859 -17.65162 -17.61139 -16.97095 -16.83470 -16.69402 -16.21933 -15.81284 -15.72794 -15.30278 -15.22284 -15.03900 -14.81324 -14.55216 -14.54188 -14.15909 -13.98978 -13.78215 -13.46167 -13.12004 -13.04317 -12.94303 -12.61285 -12.44245 -12.39142 -12.32963 -12.09242 -11.98794 -11.89525 -11.75020 -11.59409 -11.32025 -11.08949 -10.74841 -10.46573 -9.82384 -8.82376 -8.18197 -5.62196 -0.88867 -0.53767 1.32611 1.40627 1.41988 1.51127 1.59389 1.96567 2.41741 2.43710 2.56652 2.88367 3.06361 3.09717 3.27104 3.33587 3.53434 3.60389 3.76378 3.81268 3.89085 3.97861 4.12446 4.23326 4.28341 4.31786 4.37866 4.45904 4.53440 4.76426 4.80656 4.83871 4.91273 4.95386 5.04596 5.10466 5.20193 5.28317 5.33573 5.47300 5.82987 6.12909 6.16374 6.56573 6.77939 6.79885 7.50833 8.13746 9.01894 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.018682 B = 0.003410 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.400128 B = 8208.663874 C = 8874.699818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.102 3.898 3 N -0.571 5.571 4 C 0.565 3.435 5 O -0.551 6.551 6 C 0.132 3.868 7 C -0.140 4.140 8 C 0.101 3.899 9 C 0.330 3.670 10 F -0.195 7.195 11 F -0.195 7.195 12 N -0.475 5.475 13 C 0.301 3.699 14 N -0.476 5.476 15 C 0.147 3.853 16 H 0.125 0.875 17 C -0.101 4.101 18 C 0.122 3.878 19 N -0.619 5.619 20 C -0.239 4.239 21 H 0.046 0.954 22 C -0.027 4.027 23 N -0.959 5.959 24 Si 0.960 3.040 25 H -0.275 1.275 26 H -0.312 1.312 27 H -0.249 1.249 28 C 0.097 3.903 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.247 0.753 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.020 0.980 41 H 0.264 0.736 42 H 0.030 0.970 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.917 18.844 -17.641 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.020 4.020 3 N -0.301 5.301 4 C 0.351 3.649 5 O -0.429 6.429 6 C -0.016 4.016 7 C -0.163 4.163 8 C -0.050 4.050 9 C 0.276 3.724 10 F -0.177 7.177 11 F -0.177 7.177 12 N -0.189 5.189 13 C 0.014 3.986 14 N -0.192 5.192 15 C 0.044 3.956 16 H 0.143 0.857 17 C -0.140 4.140 18 C -0.002 4.002 19 N -0.347 5.347 20 C -0.368 4.368 21 H 0.064 0.936 22 C -0.222 4.222 23 N -0.605 5.605 24 Si 0.789 3.211 25 H -0.201 1.201 26 H -0.241 1.241 27 H -0.174 1.174 28 C -0.027 4.027 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.180 0.820 35 H 0.194 0.806 36 H 0.263 0.737 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.853 18.823 -17.132 25.467 hybrid contribution -0.640 -0.691 -0.114 0.949 sum 0.213 18.132 -17.247 25.025 Atomic orbital electron populations 1.22058 0.94484 1.03224 1.01773 1.21638 0.95550 0.81387 1.03401 1.47993 1.61781 1.14093 1.06235 1.17946 0.78961 0.84529 0.83457 1.90774 1.50917 1.68903 1.32285 1.21415 0.95470 0.94738 0.90018 1.22740 0.96988 0.95673 1.00909 1.22340 0.94943 0.92020 0.95647 1.20438 0.75614 0.96624 0.79710 1.93053 1.65886 1.81152 1.77575 1.93054 1.49696 1.96247 1.78666 1.68071 1.15209 1.37313 0.98304 1.25940 0.88892 0.86251 0.97530 1.69005 1.10713 1.10890 1.28570 1.22344 0.97135 0.95562 0.80550 0.85745 1.22933 0.93755 0.96417 1.00911 1.21917 0.91720 0.94530 0.92043 1.44685 1.05991 1.49950 1.34105 1.18405 1.26242 1.00848 0.91263 0.93610 1.26056 1.00763 1.00515 0.94909 1.69901 1.45305 1.34393 1.10856 0.85693 0.78907 0.81744 0.74739 1.20125 1.24059 1.17374 1.22262 0.91133 0.94660 0.94650 0.92443 0.90192 0.92689 0.89569 0.90463 0.82012 0.80592 0.73693 0.90935 0.88784 0.93657 0.96169 0.92730 0.95300 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 9.91 71.98 0.71 -3.59 16 2 C 0.10 3.13 5.29 86.38 0.46 3.59 16 3 N -0.57 -16.91 2.59 -793.95 -2.06 -18.97 16 4 C 0.56 16.24 7.41 86.97 0.64 16.89 16 5 O -0.55 -18.16 16.13 -3.64 -0.06 -18.22 16 6 C 0.13 3.06 5.96 41.99 0.25 3.31 16 7 C -0.14 -2.85 9.32 22.71 0.21 -2.64 16 8 C 0.10 1.64 6.31 42.63 0.27 1.91 16 9 C 0.33 4.03 5.58 71.24 0.40 4.43 16 10 F -0.20 -3.06 17.26 44.97 0.78 -2.29 16 11 F -0.20 -3.03 17.27 44.97 0.78 -2.25 16 12 N -0.47 -7.12 10.35 -188.12 -1.95 -9.06 16 13 C 0.30 4.35 12.27 180.92 2.22 6.57 16 14 N -0.48 -9.49 4.49 -189.15 -0.85 -10.34 16 15 C 0.15 4.39 2.74 46.18 0.13 4.51 16 16 H 0.13 3.29 6.51 -2.38 -0.02 3.28 16 17 C -0.10 -2.86 5.02 31.99 0.16 -2.70 16 18 C 0.12 4.53 7.21 86.86 0.63 5.15 16 19 N -0.62 -27.80 2.71 -691.99 -1.88 -29.68 16 20 C -0.24 -13.26 10.57 84.03 0.89 -12.37 16 21 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 22 C -0.03 -1.53 5.49 84.86 0.47 -1.06 16 23 N -0.96 -59.23 13.97 21.65 0.30 -58.93 16 24 Si 0.96 44.71 24.48 68.60 1.68 46.39 16 25 H -0.27 -12.16 7.03 99.48 0.70 -11.46 16 26 H -0.31 -14.85 7.11 99.48 0.71 -14.14 16 27 H -0.25 -10.59 6.81 99.48 0.68 -9.91 16 28 C 0.10 3.75 4.65 86.73 0.40 4.15 16 29 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.54 7.29 -2.39 -0.02 1.52 16 32 H 0.09 3.07 5.76 -2.39 -0.01 3.05 16 33 H 0.08 2.35 7.64 -2.39 -0.02 2.34 16 34 H 0.16 3.32 7.75 -2.91 -0.02 3.30 16 35 H 0.18 0.88 8.12 -2.39 -0.02 0.86 16 36 H 0.25 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.07 1.88 6.33 -2.39 -0.02 1.86 16 38 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.26 15.45 8.31 -92.71 -0.77 14.67 16 42 H 0.03 1.19 3.06 -2.38 -0.01 1.19 16 43 H 0.05 1.92 4.71 -2.39 -0.01 1.91 16 Total: -1.00 -69.54 350.23 5.61 -63.93 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 1.03 Total: 11.27 kcal Atomic # 6 Polarization: 20.31 SS G_CDS: 7.83 Total: 28.15 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -6.43 Total: -126.98 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.06 Total: -18.22 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 1.55 Total: -4.54 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.68 Total: 46.39 kcal Total: -69.54 5.61 -63.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033874681.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.844 kcal (2) G-P(sol) polarization free energy of solvation -69.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds