Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47102 * 2 1 4 4 C 1.34774 * 119.99861 * 273.28880 * 3 2 1 5 5 O 1.21577 * 119.99639 * 184.34629 * 4 3 2 6 6 C 1.47661 * 120.00298 * 4.34066 * 4 3 2 7 7 N 1.31824 * 126.46160 * 4.98664 * 6 4 3 8 8 N 1.28470 * 110.13925 * 180.02562 * 7 6 4 9 9 C 1.46501 * 124.93774 * 180.02562 * 8 7 6 10 10 C 1.35644 * 110.13210 * 0.02562 * 8 7 6 11 11 C 1.50694 * 126.43861 * 179.97438 * 10 8 7 12 12 C 1.35464 * 107.12691 * 359.72611 * 10 8 7 13 13 Cl 1.73602 * 127.23786 * 180.25667 * 12 10 8 14 14 C 1.46491 * 119.99730 * 93.28518 * 3 2 1 15 15 H 1.08997 * 110.64721 * 1.68486 * 14 3 2 16 16 C 1.55161 * 110.71955 * 125.02595 * 14 3 2 17 17 C 1.54913 * 101.58321 * 153.86452 * 16 14 3 18 18 N 1.47433 * 104.83009 * 322.99014 * 17 16 14 19 19 C 1.36942 * 125.64580 * 204.16538 * 18 17 16 20 20 H 1.07997 * 119.99496 * 158.96244 * 19 18 17 21 21 C 1.38812 * 120.00038 * 338.96397 * 19 18 17 22 22 N 1.31611 * 119.99797 * 159.41336 * 21 19 18 23 23 Si 1.86802 * 120.00094 * 339.40880 * 21 19 18 24 24 H 1.48506 * 109.46982 * 84.73597 * 23 21 19 25 25 H 1.48499 * 109.47305 * 204.73682 * 23 21 19 26 26 H 1.48503 * 109.47125 * 324.73869 * 23 21 19 27 27 C 1.47022 * 108.70258 * 24.12646 * 18 17 16 28 28 H 1.08994 * 109.46944 * 300.00070 * 1 2 3 29 29 H 1.08999 * 109.47016 * 60.00240 * 1 2 3 30 30 H 1.09003 * 109.47251 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46806 * 120.00074 * 2 1 3 32 32 H 1.09002 * 109.47215 * 239.99914 * 2 1 3 33 33 H 1.08996 * 109.47058 * 89.97248 * 9 8 7 34 34 H 1.08999 * 109.47359 * 209.97345 * 9 8 7 35 35 H 1.09006 * 109.46695 * 329.97410 * 9 8 7 36 36 H 1.09006 * 109.47046 * 89.99818 * 11 10 8 37 37 H 1.08993 * 109.47445 * 210.00175 * 11 10 8 38 38 H 1.09008 * 109.47084 * 330.00251 * 11 10 8 39 39 H 1.09001 * 111.00082 * 271.93297 * 16 14 3 40 40 H 1.08996 * 111.00545 * 35.78807 * 16 14 3 41 41 H 1.08996 * 110.36528 * 204.15463 * 17 16 14 42 42 H 1.08997 * 110.46399 * 81.87133 * 17 16 14 43 43 H 0.97009 * 119.99844 * 180.02562 * 22 21 19 44 44 H 1.08994 * 109.88155 * 239.52244 * 27 18 17 45 45 H 1.09006 * 109.87467 * 118.35957 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1799 2.0389 -1.1653 5 8 2.6593 3.1561 -1.1713 6 6 1.7747 1.4024 -2.4346 7 7 1.1619 0.2430 -2.5690 8 7 0.9595 -0.0088 -3.8124 9 6 0.3017 -1.2117 -4.3286 10 6 1.4434 1.0010 -4.5780 11 6 1.4013 1.0831 -6.0822 12 6 1.9668 1.9243 -3.7363 13 17 2.7186 3.4295 -4.1641 14 6 2.3311 2.0475 1.2666 15 1 2.1745 1.3701 2.1061 16 6 3.7848 2.5898 1.2574 17 6 3.6864 3.7608 2.2668 18 7 2.3558 4.3506 2.0319 19 6 1.9910 5.6382 2.3224 20 1 1.1414 6.0837 1.8264 21 6 2.7134 6.3707 3.2544 22 7 2.6474 7.6852 3.2524 23 14 3.7790 5.4909 4.5113 24 1 5.1072 5.1974 3.9154 25 1 3.9525 6.3561 5.7056 26 1 3.1244 4.2195 4.9119 27 6 1.4857 3.3278 1.4333 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 -0.7712 -1.0349 -4.4043 34 1 0.7012 -1.4497 -5.3144 35 1 0.4856 -2.0455 -3.6510 36 1 0.4812 1.5780 -6.3934 37 1 2.2590 1.6530 -6.4391 38 1 1.4329 0.0776 -6.5020 39 1 4.4866 1.8319 1.6055 40 1 4.0611 2.9502 0.2665 41 1 4.4670 4.4961 2.0720 42 1 3.7618 3.3901 3.2890 43 1 3.1525 8.1971 3.9035 44 1 1.1304 3.6668 0.4602 45 1 0.6392 3.1302 2.0911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033972014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = 94.413138 kcal Electronic energy + Delta-G solvation = -28673.557392 eV Core-core repulsion = 24756.024921 eV Total energy + Delta-G solvation = -3917.532471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.97820 -39.86684 -36.96564 -36.47375 -35.52890 -33.79914 -32.77675 -32.24149 -30.48384 -29.18640 -28.21657 -27.58476 -27.02665 -24.40072 -23.54553 -22.49854 -21.16100 -21.02651 -20.31046 -18.45992 -17.34817 -16.94439 -16.75858 -16.51546 -15.51451 -15.11377 -15.01921 -14.66247 -14.44112 -13.91147 -13.85926 -13.70658 -13.53291 -13.31777 -13.28660 -13.04406 -12.74174 -12.59050 -12.52638 -12.22426 -11.88401 -11.83050 -11.61453 -11.44050 -11.14176 -10.97801 -10.88080 -10.79314 -10.76567 -10.51273 -9.98782 -9.87778 -9.40634 -9.30888 -9.13917 -8.83099 -8.52332 -8.27699 -6.80177 -5.77142 -3.07187 1.36994 1.70385 1.77408 2.53629 3.12866 3.48365 3.49898 3.58387 3.62092 4.04637 4.19859 4.46371 4.54220 4.61871 4.70594 4.85712 5.00165 5.07684 5.08494 5.18055 5.25889 5.33913 5.43045 5.43679 5.51316 5.54270 5.59140 5.69068 5.71372 5.86346 5.96719 6.10024 6.23500 6.24725 6.43702 6.48524 6.55723 6.70859 6.81746 7.03608 7.18455 7.50751 7.67888 7.93662 8.46705 8.49888 9.02717 9.87091 10.38164 11.39783 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017538 B = 0.003538 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.156948 B = 7911.881079 C = 8931.386454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.108 3.892 3 N -0.594 5.594 4 C 0.590 3.410 5 O -0.485 6.485 6 C 0.009 3.991 7 N -0.243 5.243 8 N -0.285 5.285 9 C 0.088 3.912 10 C 0.021 3.979 11 C -0.084 4.084 12 C -0.103 4.103 13 Cl -0.005 7.005 14 C 0.136 3.864 15 H 0.094 0.906 16 C -0.147 4.147 17 C 0.117 3.883 18 N -0.601 5.601 19 C -0.230 4.230 20 H 0.088 0.912 21 C 0.019 3.981 22 N -0.914 5.914 23 Si 0.886 3.114 24 H -0.286 1.286 25 H -0.305 1.305 26 H -0.277 1.277 27 C 0.135 3.865 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.022 0.978 43 H 0.261 0.739 44 H 0.043 0.957 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.262 -24.370 -19.398 31.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.015 4.015 3 N -0.328 5.328 4 C 0.374 3.626 5 O -0.356 6.356 6 C -0.152 4.152 7 N -0.078 5.078 8 N -0.074 5.074 9 C -0.052 4.052 10 C -0.104 4.104 11 C -0.142 4.142 12 C -0.140 4.140 13 Cl 0.024 6.976 14 C 0.033 3.967 15 H 0.112 0.888 16 C -0.186 4.186 17 C -0.009 4.009 18 N -0.328 5.328 19 C -0.357 4.357 20 H 0.106 0.894 21 C -0.179 4.179 22 N -0.558 5.558 23 Si 0.717 3.283 24 H -0.213 1.213 25 H -0.233 1.233 26 H -0.203 1.203 27 C 0.008 3.992 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.076 0.924 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.420 -24.385 -18.772 31.090 hybrid contribution 0.782 0.163 0.371 0.881 sum -3.638 -24.222 -18.401 30.636 Atomic orbital electron populations 1.22091 0.95912 1.01439 1.02279 1.21714 0.94816 0.82084 1.02910 1.47792 1.65399 1.14101 1.05504 1.16851 0.79406 0.85059 0.81256 1.90935 1.41694 1.17443 1.85479 1.22022 1.05069 0.93388 0.94687 1.73909 1.17584 1.16640 0.99698 1.45399 1.42102 1.16660 1.03217 1.22184 0.98193 0.83910 1.00890 1.21073 1.03461 0.90208 0.95661 1.20389 1.04490 1.03338 0.86029 1.20562 1.08143 0.93104 0.92224 1.98380 1.79631 1.27042 1.92533 1.22190 0.96447 0.94471 0.83571 0.88839 1.23228 0.94757 0.97916 1.02652 1.21882 0.89862 0.94033 0.95085 1.44544 1.05867 1.08931 1.73460 1.18629 1.14702 0.84713 1.17663 0.89396 1.25023 0.98885 0.95176 0.98803 1.69840 1.44344 1.04404 1.37250 0.86902 0.80579 0.78745 0.82104 1.21272 1.23288 1.20290 1.21551 0.92641 0.87507 0.97489 0.92740 0.92194 0.92281 0.90972 0.89152 0.89477 0.88623 0.88245 0.89868 0.89279 0.90810 0.92205 0.88487 0.92361 0.96044 0.92914 0.93920 0.95511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.69 37.16 0.36 -1.37 16 2 C 0.11 1.26 5.67 -4.04 -0.02 1.24 16 3 N -0.59 -9.38 2.54 -165.20 -0.42 -9.80 16 4 C 0.59 10.46 6.74 -12.41 -0.08 10.38 16 5 O -0.48 -10.47 12.26 5.30 0.06 -10.41 16 6 C 0.01 0.14 6.64 -82.76 -0.55 -0.41 16 7 N -0.24 -2.84 6.95 33.42 0.23 -2.61 16 8 N -0.29 -2.52 3.72 -63.68 -0.24 -2.75 16 9 C 0.09 0.30 11.12 59.85 0.67 0.96 16 10 C 0.02 0.20 6.94 -81.90 -0.57 -0.36 16 11 C -0.08 -0.47 9.98 36.00 0.36 -0.11 16 12 C -0.10 -1.41 6.79 -39.31 -0.27 -1.68 16 13 Cl 0.00 -0.07 27.94 -51.86 -1.45 -1.52 16 14 C 0.14 2.46 3.45 -66.10 -0.23 2.23 16 15 H 0.09 1.47 7.81 -51.93 -0.41 1.06 16 16 C -0.15 -2.88 6.39 -24.58 -0.16 -3.03 16 17 C 0.12 2.81 4.71 -2.52 -0.01 2.80 16 18 N -0.60 -16.08 3.18 -170.06 -0.54 -16.62 16 19 C -0.23 -7.08 10.58 -15.06 -0.16 -7.24 16 20 H 0.09 2.89 8.06 -52.49 -0.42 2.47 16 21 C 0.02 0.58 5.45 -17.43 -0.09 0.49 16 22 N -0.91 -29.88 13.97 55.49 0.78 -29.11 16 23 Si 0.89 23.97 24.27 -169.99 -4.13 19.85 16 24 H -0.29 -7.49 6.58 56.52 0.37 -7.12 16 25 H -0.30 -8.27 7.11 56.52 0.40 -7.87 16 26 H -0.28 -7.30 6.62 56.52 0.37 -6.92 16 27 C 0.13 3.02 6.51 -3.06 -0.02 3.00 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.74 6.64 -51.93 -0.34 0.40 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 32 H 0.09 1.02 5.67 -51.93 -0.29 0.72 16 33 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 34 H 0.10 0.09 6.98 -51.93 -0.36 -0.27 16 35 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.52 8.04 -51.93 -0.42 0.11 16 38 H 0.07 0.22 7.03 -51.92 -0.36 -0.15 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 2.08 5.66 -51.93 -0.29 1.79 16 41 H 0.06 1.51 6.82 -51.93 -0.35 1.15 16 42 H 0.02 0.52 5.45 -51.93 -0.28 0.24 16 43 H 0.26 8.08 8.31 -40.82 -0.34 7.74 16 44 H 0.04 1.04 6.41 -51.93 -0.33 0.71 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -38.18 363.53 -7.44 -45.62 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -6.44 Total: -5.02 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -0.78 Total: 6.89 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.19 Total: -60.89 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.06 Total: -10.41 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.13 Total: 19.85 kcal Atomic # 17 Polarization: -0.07 SS G_CDS: -1.45 Total: -1.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -38.18 -7.44 -45.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033972014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.031 kcal (2) G-P(sol) polarization free energy of solvation -38.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds