Wall clock time and date at job start Sat Apr 11 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47137 * 2 1 4 4 N 1.28432 * 125.18651 * 84.28893 * 3 2 1 5 5 C 1.30842 * 110.97732 * 180.02562 * 4 3 2 6 6 C 1.39803 * 107.87897 * 0.25880 * 5 4 3 7 7 Cl 1.73602 * 127.33387 * 179.71886 * 6 5 4 8 8 C 1.36752 * 125.18671 * 264.31004 * 3 2 1 9 9 C 1.47027 * 126.90352 * 359.97438 * 8 3 2 10 10 O 1.21646 * 120.00256 * 93.14660 * 9 8 3 11 11 N 1.34782 * 119.99899 * 273.14361 * 9 8 3 12 12 C 1.46500 * 119.99700 * 185.10270 * 11 9 8 13 13 H 1.08994 * 108.46309 * 327.28616 * 12 11 9 14 14 C 1.52532 * 108.52046 * 209.71568 * 12 11 9 15 15 C 1.50122 * 105.41599 * 149.35344 * 14 12 11 16 16 C 1.54844 * 110.81117 * 97.68788 * 15 14 12 17 17 C 1.54897 * 110.14207 * 321.13123 * 16 15 14 18 18 N 1.43436 * 116.07797 * 318.63988 * 17 16 15 19 19 C 1.36940 * 120.53922 * 271.58915 * 18 17 16 20 20 H 1.07998 * 119.99638 * 140.37246 * 19 18 17 21 21 C 1.38815 * 120.00011 * 320.37112 * 19 18 17 22 22 N 1.31620 * 119.99977 * 158.42029 * 21 19 18 23 23 Si 1.86799 * 120.00013 * 338.41745 * 21 19 18 24 24 H 1.48502 * 109.46860 * 95.73598 * 23 21 19 25 25 H 1.48499 * 109.47212 * 215.73793 * 23 21 19 26 26 H 1.48507 * 109.47317 * 335.73679 * 23 21 19 27 27 C 1.46240 * 108.52357 * 85.00028 * 12 11 9 28 28 H 1.08996 * 109.47127 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46742 * 299.99635 * 1 2 3 30 30 H 1.08999 * 109.47397 * 59.99661 * 1 2 3 31 31 H 1.09008 * 109.46890 * 240.00194 * 2 1 3 32 32 H 1.08999 * 109.47397 * 120.00339 * 2 1 3 33 33 H 1.08004 * 126.05638 * 180.02562 * 5 4 3 34 34 H 0.96993 * 119.99683 * 5.10211 * 11 9 8 35 35 H 1.08998 * 110.25031 * 268.32925 * 14 12 11 36 36 H 1.08999 * 110.24561 * 30.38286 * 14 12 11 37 37 H 1.08999 * 109.21296 * 337.34371 * 15 14 12 38 38 H 1.08997 * 109.17769 * 218.00655 * 15 14 12 39 39 H 1.09007 * 109.35787 * 200.92773 * 16 15 14 40 40 H 1.09000 * 109.25020 * 81.26978 * 16 15 14 41 41 H 1.09004 * 108.16102 * 196.92563 * 17 16 15 42 42 H 1.08998 * 108.00241 * 80.22922 * 17 16 15 43 43 H 0.96993 * 120.00079 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.84666 * 299.15296 * 27 12 11 45 45 H 1.09007 * 109.84297 * 60.13919 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1666 2.1138 1.0444 5 6 2.6190 3.2992 0.7248 6 6 2.7737 3.3394 -0.6640 7 17 3.3361 4.6731 -1.6226 8 6 2.3855 2.0872 -1.1121 9 6 2.3661 1.6145 -2.5042 10 8 1.3911 1.8188 -3.2024 11 7 3.4286 0.9549 -3.0068 12 6 3.4563 0.5823 -4.4234 13 1 2.4364 0.3711 -4.7447 14 6 4.2819 -0.6915 -4.5732 15 6 3.6882 -1.4161 -5.7463 16 6 4.5008 -1.1365 -7.0344 17 6 4.9558 0.3437 -7.0672 18 7 3.9873 1.3108 -6.6379 19 6 3.1018 1.8525 -7.5310 20 1 2.0762 2.0228 -7.2388 21 6 3.5226 2.1827 -8.8120 22 7 2.6435 2.2934 -9.7854 23 14 5.3363 2.4702 -9.1544 24 1 5.9457 1.2204 -9.6759 25 1 5.4846 3.5512 -10.1617 26 1 6.0204 2.8675 -7.8976 27 6 3.9598 1.7192 -5.1931 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.8313 4.1050 1.4118 34 1 4.1748 0.7270 -2.4306 35 1 5.3248 -0.4440 -4.7711 36 1 4.2016 -1.3011 -3.6732 37 1 2.6606 -1.0828 -5.8911 38 1 3.6926 -2.4874 -5.5450 39 1 3.8792 -1.3428 -7.9057 40 1 5.3771 -1.7844 -7.0542 41 1 5.2487 0.5866 -8.0886 42 1 5.8363 0.4397 -6.4318 43 1 2.9374 2.5245 -10.6803 44 1 3.2987 2.5759 -5.0632 45 1 4.9665 1.9739 -4.8613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034223686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:05 Heat of formation + Delta-G solvation = 70.387653 kcal Electronic energy + Delta-G solvation = -28472.703233 eV Core-core repulsion = 24554.128938 eV Total energy + Delta-G solvation = -3918.574294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.83954 -39.90094 -37.92091 -36.68622 -34.85293 -34.74912 -33.28672 -31.56937 -31.24239 -30.09197 -29.83653 -26.42782 -24.84516 -24.48353 -23.81320 -22.42523 -21.78182 -20.42013 -20.09668 -19.42500 -18.29836 -16.67638 -16.53328 -16.28726 -15.96526 -15.54713 -15.38953 -14.71964 -14.66738 -14.24811 -14.14465 -14.01862 -13.62710 -13.24247 -13.18425 -12.97362 -12.78503 -12.50345 -12.09158 -12.00410 -11.95050 -11.84254 -11.74366 -11.68771 -11.21922 -10.82122 -10.65198 -10.47643 -10.46141 -10.18449 -10.12575 -10.03118 -9.68560 -9.51669 -9.46908 -9.06459 -8.93072 -8.45300 -6.79801 -5.97862 -3.43622 1.27895 1.60337 2.22036 2.27884 2.63762 3.13017 3.32024 3.47450 3.52905 4.12058 4.38961 4.50973 4.53820 4.65885 4.74195 4.96972 4.98178 5.00684 5.16210 5.21971 5.24221 5.33891 5.38463 5.44248 5.72908 5.80358 5.83693 5.87538 5.93446 6.03902 6.10660 6.27440 6.34380 6.40444 6.46608 6.56760 6.63904 6.69810 6.79608 6.83909 6.95801 7.43868 7.66047 8.08049 8.11567 8.38559 9.01537 9.71431 10.12943 11.17329 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014448 B = 0.003631 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.573402 B = 7709.977278 C = 8710.610174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.117 3.883 3 N -0.264 5.264 4 N -0.273 5.273 5 C 0.022 3.978 6 C -0.117 4.117 7 Cl -0.015 7.015 8 C -0.006 4.006 9 C 0.584 3.416 10 O -0.502 6.502 11 N -0.713 5.713 12 C 0.130 3.870 13 H 0.095 0.905 14 C -0.119 4.119 15 C -0.106 4.106 16 C -0.142 4.142 17 C 0.146 3.854 18 N -0.593 5.593 19 C -0.267 4.267 20 H 0.078 0.922 21 C 0.041 3.959 22 N -0.898 5.898 23 Si 0.880 3.120 24 H -0.286 1.286 25 H -0.302 1.302 26 H -0.270 1.270 27 C 0.128 3.872 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.194 0.806 34 H 0.397 0.603 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.042 0.958 42 H 0.029 0.971 43 H 0.263 0.737 44 H 0.073 0.927 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 -6.003 21.980 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.003 4.003 3 N -0.053 5.053 4 N -0.104 5.104 5 C -0.156 4.156 6 C -0.155 4.155 7 Cl 0.014 6.986 8 C -0.136 4.136 9 C 0.365 3.635 10 O -0.374 6.374 11 N -0.365 5.365 12 C 0.027 3.973 13 H 0.113 0.887 14 C -0.157 4.157 15 C -0.144 4.144 16 C -0.183 4.183 17 C 0.019 3.981 18 N -0.315 5.315 19 C -0.396 4.396 20 H 0.096 0.904 21 C -0.160 4.160 22 N -0.538 5.538 23 Si 0.710 3.290 24 H -0.214 1.214 25 H -0.230 1.230 26 H -0.195 1.195 27 C 0.003 3.997 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.125 0.875 33 H 0.211 0.789 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.662 -6.477 22.060 23.051 hybrid contribution 1.651 0.756 -0.795 1.982 sum 3.312 -5.722 21.265 22.269 Atomic orbital electron populations 1.22188 0.92890 1.03899 1.04064 1.22107 0.96721 0.76049 1.05408 1.45748 1.45368 1.12319 1.01886 1.73197 1.19399 1.04189 1.13576 1.23505 1.03711 0.95638 0.92790 1.21290 1.10962 0.90516 0.92724 1.98385 1.87384 1.42486 1.70364 1.21455 1.08502 0.93612 0.90042 1.16875 0.83887 0.78781 0.83947 1.90936 1.32934 1.54263 1.59306 1.46474 1.20169 1.57294 1.12591 1.21102 1.02693 0.96068 0.77456 0.88712 1.21322 1.00302 0.95437 0.98602 1.21290 1.00773 0.98047 0.94325 1.22820 0.98919 0.99111 0.97414 1.20708 0.91081 0.88145 0.98163 1.44019 1.40493 1.43189 1.03829 1.18754 0.91132 1.37651 0.92020 0.90410 1.25499 0.96985 0.97352 0.96170 1.69864 1.34037 1.49251 1.00665 0.86870 0.87675 0.76925 0.77531 1.21400 1.22980 1.19516 1.20742 0.98787 0.95187 0.85000 0.89739 0.91187 0.91053 0.88100 0.87513 0.78922 0.76962 0.90804 0.91981 0.91211 0.93454 0.91977 0.93233 0.93981 0.95263 0.92686 0.90871 0.94811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 10.24 37.16 0.38 -0.96 16 2 C 0.12 0.91 6.92 -4.04 -0.03 0.88 16 3 N -0.26 -2.92 3.35 -57.11 -0.19 -3.11 16 4 N -0.27 -3.10 11.89 30.61 0.36 -2.73 16 5 C 0.02 0.23 12.04 -17.39 -0.21 0.03 16 6 C -0.12 -1.50 6.89 -38.88 -0.27 -1.77 16 7 Cl -0.01 -0.20 29.24 -51.86 -1.52 -1.71 16 8 C -0.01 -0.07 6.72 -82.00 -0.55 -0.62 16 9 C 0.58 8.83 6.82 -12.70 -0.09 8.75 16 10 O -0.50 -9.85 16.67 5.24 0.09 -9.76 16 11 N -0.71 -9.35 4.87 -58.42 -0.28 -9.64 16 12 C 0.13 2.09 2.05 -71.38 -0.15 1.94 16 13 H 0.09 1.82 6.15 -51.93 -0.32 1.50 16 14 C -0.12 -1.59 5.25 -28.40 -0.15 -1.74 16 15 C -0.11 -1.64 5.65 -27.19 -0.15 -1.79 16 16 C -0.14 -2.51 6.41 -24.76 -0.16 -2.67 16 17 C 0.15 3.06 4.20 -4.66 -0.02 3.04 16 18 N -0.59 -13.71 2.15 -175.08 -0.38 -14.09 16 19 C -0.27 -7.46 9.94 -15.06 -0.15 -7.61 16 20 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 21 C 0.04 1.18 5.32 -17.43 -0.09 1.08 16 22 N -0.90 -27.46 13.97 55.49 0.78 -26.69 16 23 Si 0.88 22.28 25.10 -169.99 -4.27 18.02 16 24 H -0.29 -7.01 6.76 56.52 0.38 -6.63 16 25 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.13 2.51 5.53 -5.20 -0.03 2.48 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 0.72 7.64 -51.92 -0.40 0.32 16 32 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.19 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.40 4.00 8.60 -40.82 -0.35 3.65 16 35 H 0.07 0.99 6.28 -51.93 -0.33 0.67 16 36 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 37 H 0.07 1.24 6.82 -51.93 -0.35 0.89 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.99 3.22 -51.93 -0.17 0.82 16 42 H 0.03 0.55 6.87 -51.93 -0.36 0.19 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.07 1.61 7.98 -51.93 -0.41 1.20 16 45 H 0.03 0.62 8.12 -51.93 -0.42 0.19 16 LS Contribution 373.32 15.07 5.63 5.63 Total: -1.00 -33.52 373.32 -7.93 -41.45 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -6.48 Total: 1.60 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.66 Total: 1.04 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.29 Total: -56.26 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.27 Total: 18.02 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.52 -7.93 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034223686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.837 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds