Wall clock time and date at job start Sat Apr 11 2020 06:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47088 * 2 1 4 4 N 1.28442 * 125.18541 * 275.20399 * 3 2 1 5 5 C 1.30835 * 110.97761 * 180.25598 * 4 3 2 6 6 C 1.39808 * 107.88064 * 359.73913 * 5 4 3 7 7 Cl 1.73596 * 127.33644 * 179.97438 * 6 5 4 8 8 C 1.36744 * 125.19277 * 95.00757 * 3 2 1 9 9 C 1.47034 * 126.90230 * 0.02562 * 8 3 2 10 10 O 1.21639 * 120.00356 * 260.26979 * 9 8 3 11 11 N 1.34781 * 120.00163 * 80.26217 * 9 8 3 12 12 C 1.46493 * 120.00326 * 184.84797 * 11 9 8 13 13 H 1.09007 * 109.36474 * 35.00185 * 12 11 9 14 14 C 1.50880 * 109.26658 * 154.68366 * 12 11 9 15 15 C 1.52570 * 109.36176 * 212.01807 * 14 12 11 16 16 C 1.47097 * 114.32236 * 274.98659 * 15 14 12 17 17 C 1.54861 * 110.32263 * 62.79804 * 16 15 14 18 18 N 1.44579 * 109.60376 * 288.73413 * 17 16 15 19 19 C 1.36937 * 118.64424 * 270.69972 * 18 17 16 20 20 H 1.07998 * 119.99450 * 30.56280 * 19 18 17 21 21 C 1.38806 * 119.99959 * 210.55713 * 19 18 17 22 22 N 1.31614 * 120.00659 * 10.30689 * 21 19 18 23 23 Si 1.86802 * 119.99748 * 190.30127 * 21 19 18 24 24 H 1.48504 * 109.47145 * 60.00169 * 23 21 19 25 25 H 1.48498 * 109.47059 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47528 * 300.00404 * 23 21 19 27 27 C 1.47604 * 122.70989 * 90.72809 * 18 17 16 28 28 H 1.09001 * 109.47109 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47045 * 300.00128 * 1 2 3 30 30 H 1.09004 * 109.47373 * 60.00246 * 1 2 3 31 31 H 1.08995 * 109.47262 * 239.99879 * 2 1 3 32 32 H 1.09005 * 109.46855 * 119.99833 * 2 1 3 33 33 H 1.08004 * 126.05984 * 179.75638 * 5 4 3 34 34 H 0.97000 * 119.99470 * 4.84810 * 11 9 8 35 35 H 1.09007 * 109.48641 * 331.98458 * 14 12 11 36 36 H 1.08992 * 109.48881 * 92.04664 * 14 12 11 37 37 H 1.08994 * 108.51345 * 153.73137 * 15 14 12 38 38 H 1.08996 * 108.51004 * 36.23794 * 15 14 12 39 39 H 1.09003 * 109.32776 * 302.54017 * 16 15 14 40 40 H 1.08998 * 109.18487 * 182.96912 * 16 15 14 41 41 H 1.09001 * 109.44797 * 168.69028 * 17 16 15 42 42 H 1.09002 * 109.44874 * 48.77341 * 17 16 15 43 43 H 0.96992 * 120.00560 * 179.97438 * 22 21 19 44 44 H 1.09007 * 108.94395 * 197.18479 * 27 18 17 45 45 H 1.09000 * 108.94785 * 78.55444 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1752 2.1107 -1.0454 5 6 2.6306 3.2950 -0.7261 6 6 2.7777 3.3380 0.6635 7 17 3.3470 4.6692 1.6213 8 6 2.3730 2.0917 1.1132 9 6 2.3379 1.6247 2.5070 10 8 1.4091 1.9340 3.2290 11 7 3.3349 0.8536 2.9846 12 6 3.2489 0.3006 4.3384 13 1 2.2106 0.0571 4.5641 14 6 4.0853 -0.9526 4.4183 15 6 3.4489 -1.9232 5.4087 16 6 3.8261 -1.6915 6.8114 17 6 3.3400 -0.2964 7.2757 18 7 4.1340 0.7306 6.6391 19 6 5.2799 1.1528 7.2586 20 1 5.8436 0.4687 7.8757 21 6 5.7170 2.4599 7.0934 22 7 4.9356 3.3470 6.5150 23 14 7.4143 2.9598 7.6924 24 1 8.4440 2.1466 6.9970 25 1 7.6384 4.3984 7.4001 26 1 7.5095 2.7320 9.1568 27 6 3.7601 1.3430 5.3493 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.8531 4.0973 -1.4141 34 1 4.1093 0.6649 2.4319 35 1 4.1368 -1.4188 3.4343 36 1 5.0907 -0.6980 4.7535 37 1 3.7399 -2.9373 5.1350 38 1 2.3652 -1.8431 5.3239 39 1 4.9106 -1.7459 6.9072 40 1 3.3697 -2.4590 7.4365 41 1 3.4443 -0.2173 8.3578 42 1 2.2928 -0.1673 7.0020 43 1 5.2409 4.2604 6.3999 44 1 4.6321 1.8448 4.9297 45 1 2.9776 2.0820 5.5220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034223689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:07 Heat of formation + Delta-G solvation = 58.042993 kcal Electronic energy + Delta-G solvation = -28624.593951 eV Core-core repulsion = 24705.484352 eV Total energy + Delta-G solvation = -3919.109599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.69869 -39.48687 -37.63983 -36.47975 -34.76118 -34.48136 -33.56309 -31.32135 -30.73783 -29.98224 -29.60624 -26.09143 -24.59853 -24.26360 -23.68940 -22.35331 -21.63727 -20.32721 -19.71223 -19.28786 -18.09282 -16.67661 -16.31614 -16.19992 -15.56889 -15.46561 -15.15117 -14.67606 -14.30027 -14.21273 -13.98599 -13.61103 -13.50805 -13.22052 -13.09247 -12.76034 -12.47510 -12.43526 -12.09457 -11.83230 -11.71942 -11.57267 -11.40284 -11.18051 -10.98579 -10.73663 -10.50288 -10.46395 -10.32292 -10.21783 -9.99128 -9.91283 -9.80664 -9.51124 -9.38632 -8.76721 -8.69741 -8.39530 -6.58244 -5.74438 -3.25478 1.41458 1.75988 2.36738 2.46758 2.82040 3.32446 3.38228 3.44303 3.44744 4.22384 4.49137 4.55820 4.63523 4.77180 4.83080 5.09746 5.16967 5.24970 5.29003 5.33609 5.45326 5.45559 5.58158 5.64265 5.76594 5.84420 5.97212 6.06358 6.10993 6.27938 6.43912 6.46982 6.54662 6.60084 6.61972 6.70021 6.82475 6.93308 7.08251 7.34430 7.67723 7.78574 7.80783 7.84211 8.30249 8.51499 9.26357 9.91280 10.38310 11.31300 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.004296 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.598403 B = 6516.240087 C = 8360.594556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.266 5.266 4 N -0.275 5.275 5 C 0.020 3.980 6 C -0.116 4.116 7 Cl -0.009 7.009 8 C -0.005 4.005 9 C 0.587 3.413 10 O -0.507 6.507 11 N -0.702 5.702 12 C 0.119 3.881 13 H 0.075 0.925 14 C -0.116 4.116 15 C -0.097 4.097 16 C -0.148 4.148 17 C 0.155 3.845 18 N -0.586 5.586 19 C -0.265 4.265 20 H 0.063 0.937 21 C 0.010 3.990 22 N -0.897 5.897 23 Si 0.900 3.100 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.175 3.825 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.193 0.807 34 H 0.397 0.603 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.031 0.969 43 H 0.255 0.745 44 H 0.077 0.923 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.180 -7.814 -14.806 17.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.003 4.003 3 N -0.055 5.055 4 N -0.105 5.105 5 C -0.158 4.158 6 C -0.154 4.154 7 Cl 0.019 6.981 8 C -0.135 4.135 9 C 0.368 3.632 10 O -0.379 6.379 11 N -0.353 5.353 12 C 0.014 3.986 13 H 0.093 0.907 14 C -0.154 4.154 15 C -0.135 4.135 16 C -0.189 4.189 17 C 0.027 3.973 18 N -0.307 5.307 19 C -0.395 4.395 20 H 0.081 0.919 21 C -0.189 4.189 22 N -0.540 5.540 23 Si 0.730 3.270 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.049 3.951 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.210 0.790 34 H 0.231 0.769 35 H 0.068 0.932 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.206 -8.119 -15.110 18.242 hybrid contribution 1.637 0.975 0.691 2.027 sum -4.569 -7.144 -14.419 16.728 Atomic orbital electron populations 1.22186 0.93066 1.03765 1.03962 1.22086 0.96544 0.76231 1.05454 1.45709 1.45811 1.12180 1.01818 1.73171 1.19474 1.04304 1.13581 1.23492 1.03800 0.95672 0.92837 1.21348 1.10354 0.90966 0.92717 1.98402 1.86972 1.42502 1.70213 1.21468 1.08524 0.93541 0.89968 1.16797 0.83475 0.78980 0.83948 1.90883 1.35178 1.54199 1.57672 1.46196 1.21339 1.50455 1.17317 1.21942 1.00381 0.95143 0.81095 0.90726 1.21291 1.01567 0.94505 0.97999 1.20211 0.99749 0.97534 0.96029 1.21512 1.01828 1.00165 0.95367 1.20741 0.93181 0.87311 0.96117 1.43479 1.25526 1.43234 1.18490 1.19097 1.00066 0.93191 1.27123 0.91883 1.25174 0.98244 0.95651 0.99845 1.70019 1.34898 1.02765 1.46364 0.86428 0.84462 0.77338 0.78799 1.21046 1.21649 1.20855 1.21323 0.99999 0.90507 0.83257 0.89823 0.91208 0.91201 0.87544 0.88073 0.78981 0.76860 0.93178 0.89856 0.93670 0.93264 0.92055 0.93432 0.93512 0.95022 0.93517 0.90476 0.94668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 10.24 37.16 0.38 -1.05 16 2 C 0.12 1.03 6.91 -4.04 -0.03 1.00 16 3 N -0.27 -3.31 3.35 -57.11 -0.19 -3.50 16 4 N -0.28 -3.49 11.89 30.61 0.36 -3.12 16 5 C 0.02 0.25 12.04 -17.39 -0.21 0.04 16 6 C -0.12 -1.73 6.89 -38.88 -0.27 -2.00 16 7 Cl -0.01 -0.15 29.24 -51.86 -1.52 -1.67 16 8 C 0.00 -0.07 6.72 -82.00 -0.55 -0.62 16 9 C 0.59 10.16 6.87 -12.69 -0.09 10.07 16 10 O -0.51 -10.77 16.82 5.24 0.09 -10.68 16 11 N -0.70 -11.17 4.96 -55.57 -0.28 -11.45 16 12 C 0.12 2.15 2.24 -68.51 -0.15 2.00 16 13 H 0.07 1.42 6.82 -51.93 -0.35 1.07 16 14 C -0.12 -1.81 5.06 -28.02 -0.14 -1.95 16 15 C -0.10 -1.45 5.15 -29.78 -0.15 -1.60 16 16 C -0.15 -2.48 5.74 -28.58 -0.16 -2.65 16 17 C 0.15 3.16 5.65 -4.09 -0.02 3.14 16 18 N -0.59 -14.12 2.26 -172.09 -0.39 -14.51 16 19 C -0.26 -7.03 9.41 -15.06 -0.14 -7.17 16 20 H 0.06 1.65 7.85 -52.49 -0.41 1.24 16 21 C 0.01 0.29 4.98 -17.43 -0.09 0.20 16 22 N -0.90 -25.98 10.97 55.49 0.61 -25.37 16 23 Si 0.90 21.51 29.57 -169.99 -5.03 16.48 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 C 0.18 4.13 4.23 -2.94 -0.01 4.12 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.84 7.66 -51.93 -0.40 0.44 16 33 H 0.19 1.74 8.06 -52.48 -0.42 1.31 16 34 H 0.40 5.37 8.53 -40.82 -0.35 5.02 16 35 H 0.05 0.64 7.94 -51.93 -0.41 0.23 16 36 H 0.08 1.52 7.48 -51.93 -0.39 1.13 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.72 7.36 -51.93 -0.38 0.33 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.98 7.99 -51.93 -0.41 0.56 16 42 H 0.03 0.63 8.07 -51.93 -0.42 0.22 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.08 2.02 6.46 -51.92 -0.34 1.69 16 45 H 0.04 0.98 7.99 -51.93 -0.41 0.56 16 LS Contribution 380.00 15.07 5.73 5.73 Total: -1.00 -32.08 380.00 -9.05 -41.13 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.80 Total: 3.43 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.64 Total: 3.53 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.12 Total: -57.95 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.52 Total: -1.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.08 -9.05 -41.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034223689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.170 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds