Wall clock time and date at job start Sat Apr 11 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34941 * 126.02413 * 2 1 4 4 C 1.35313 * 107.76640 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.04656 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47159 * 100.00521 * 5 4 3 7 7 O 1.21282 * 120.00078 * 359.97438 * 6 5 4 8 8 N 1.34772 * 119.99960 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00034 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.35805 * 324.71975 * 9 8 6 11 11 C 1.54845 * 109.35943 * 204.99615 * 9 8 6 12 12 C 1.50121 * 110.81445 * 201.06155 * 11 9 8 13 13 C 1.52527 * 105.41433 * 97.68551 * 12 11 9 14 14 C 1.46238 * 114.27438 * 270.58765 * 13 12 11 15 15 N 1.50164 * 107.53002 * 58.41187 * 14 13 12 16 16 C 1.36940 * 120.53765 * 109.56644 * 15 14 13 17 17 H 1.08004 * 120.00183 * 172.84646 * 16 15 14 18 18 C 1.38815 * 119.99854 * 352.84170 * 16 15 14 19 19 N 1.31620 * 119.99900 * 319.29777 * 18 16 15 20 20 Si 1.86797 * 119.99615 * 139.29920 * 18 16 15 21 21 H 1.48500 * 109.47013 * 269.99639 * 20 18 16 22 22 H 1.48495 * 109.47429 * 29.99922 * 20 18 16 23 23 H 1.48503 * 109.47030 * 150.00168 * 20 18 16 24 24 C 1.43430 * 118.92544 * 289.83407 * 15 14 13 25 25 C 1.39969 * 107.90621 * 0.24997 * 4 3 2 26 26 Cl 1.73594 * 125.91376 * 179.75456 * 25 4 3 27 27 N 1.30902 * 108.17658 * 359.58322 * 25 4 3 28 28 H 1.09004 * 109.47315 * 90.00028 * 1 2 3 29 29 H 1.09005 * 109.47092 * 209.99391 * 1 2 3 30 30 H 1.09003 * 109.47403 * 329.99870 * 1 2 3 31 31 H 1.08001 * 126.11894 * 359.94735 * 3 2 1 32 32 H 1.09001 * 109.46901 * 339.99923 * 5 4 3 33 33 H 1.09005 * 109.46747 * 220.00660 * 5 4 3 34 34 H 0.97001 * 120.00173 * 359.97438 * 8 6 5 35 35 H 1.08995 * 109.20678 * 80.72016 * 11 9 8 36 36 H 1.09000 * 109.17081 * 321.38192 * 11 9 8 37 37 H 1.08998 * 110.25305 * 338.70962 * 12 11 9 38 38 H 1.09002 * 110.37182 * 216.71684 * 12 11 9 39 39 H 1.09004 * 108.51900 * 149.35009 * 13 12 11 40 40 H 1.08994 * 108.39931 * 31.74574 * 13 12 11 41 41 H 1.08996 * 109.85131 * 298.89823 * 14 13 12 42 42 H 1.09009 * 109.89776 * 177.94655 * 14 13 12 43 43 H 0.96994 * 120.00074 * 353.65763 * 19 18 16 44 44 H 1.09001 * 108.15893 * 213.03183 * 24 15 14 45 45 H 1.09000 * 108.16547 * 329.60142 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2586 1.0914 0.0000 4 6 3.5436 0.6674 0.0006 5 6 4.7675 1.5467 0.0002 6 6 5.3192 1.6403 1.3995 7 8 4.7721 1.0514 2.3077 8 7 6.4199 2.3793 1.6418 9 6 6.9565 2.4698 3.0020 10 1 6.1332 2.4655 3.7163 11 6 7.7583 3.7862 3.1509 12 6 8.7234 3.6962 4.2972 13 6 10.0658 3.3353 3.6696 14 6 10.3052 1.8978 3.5473 15 7 9.1957 1.3238 2.7139 16 6 9.4401 0.8763 1.4430 17 1 8.6661 0.3608 0.8938 18 6 10.6826 1.0854 0.8605 19 7 11.3025 2.2345 1.0269 20 14 11.4749 -0.2642 -0.1595 21 1 12.3079 -1.1242 0.7189 22 1 10.4170 -1.0871 -0.7989 23 1 12.3296 0.3460 -1.2094 24 6 7.8746 1.2573 3.2685 25 6 3.5351 -0.7322 -0.0049 26 17 4.9347 -1.7590 -0.0125 27 7 2.2889 -1.1329 0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8900 0.5139 31 1 1.9274 2.1193 -0.0008 32 1 4.4992 2.5427 -0.3520 33 1 5.5220 1.1189 -0.6600 34 1 6.8572 2.8506 0.9155 35 1 7.0663 4.6094 3.3285 36 1 8.3111 3.9746 2.2306 37 1 8.4109 2.9178 4.9933 38 1 8.7928 4.6551 4.8109 39 1 10.8600 3.7680 4.2780 40 1 10.1115 3.7798 2.6755 41 1 10.3027 1.4368 4.5349 42 1 11.2638 1.7215 3.0592 43 1 10.8537 2.9668 1.4775 44 1 7.3826 0.3706 2.8687 45 1 7.9650 1.1316 4.3475 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034394772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:09 Heat of formation + Delta-G solvation = 70.654403 kcal Electronic energy + Delta-G solvation = -28345.385717 eV Core-core repulsion = 24426.822990 eV Total energy + Delta-G solvation = -3918.562727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40357 -39.35117 -37.84939 -36.59132 -34.38145 -33.58434 -33.22301 -31.96850 -31.04098 -29.99910 -28.33494 -26.25079 -25.56217 -24.06701 -22.76366 -21.35252 -21.04396 -20.37949 -19.58125 -19.18479 -17.12870 -17.05031 -16.62072 -15.65202 -15.62168 -15.19980 -15.06903 -14.53787 -14.48660 -13.94073 -13.61922 -13.51075 -13.46951 -13.35286 -12.99563 -12.67173 -12.62931 -12.28533 -12.09027 -11.87638 -11.70409 -11.58911 -11.39742 -10.99875 -10.79972 -10.52669 -10.47561 -10.32877 -10.12236 -10.02150 -9.78007 -9.70914 -9.45752 -9.37882 -9.24776 -8.59341 -8.46983 -8.08617 -6.90866 -6.12461 -2.97326 1.54513 1.65819 2.46711 2.81965 3.17985 3.56648 3.60569 3.75624 3.86308 4.34265 4.60605 4.65104 4.84688 4.99499 5.08962 5.14101 5.19123 5.24734 5.34344 5.39121 5.45401 5.50345 5.61520 5.75699 5.92516 5.99753 6.04696 6.06421 6.15503 6.28483 6.39339 6.44009 6.63486 6.73004 6.74160 6.76419 6.90094 6.97328 7.20208 7.26931 7.28634 7.37224 8.04268 8.14083 8.57760 8.81119 9.12745 9.90447 10.35325 11.17988 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013223 B = 0.003752 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.059719 B = 7460.280526 C = 8936.041535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.368 5.368 3 C 0.072 3.928 4 C -0.194 4.194 5 C -0.067 4.067 6 C 0.513 3.487 7 O -0.545 6.545 8 N -0.706 5.706 9 C 0.117 3.883 10 H 0.072 0.928 11 C -0.111 4.111 12 C -0.111 4.111 13 C -0.134 4.134 14 C 0.129 3.871 15 N -0.587 5.587 16 C -0.347 4.347 17 H 0.065 0.935 18 C -0.017 4.017 19 N -0.904 5.904 20 Si 1.035 2.965 21 H -0.296 1.296 22 H -0.293 1.293 23 H -0.294 1.294 24 C 0.154 3.846 25 C 0.142 3.858 26 Cl 0.015 6.985 27 N -0.286 5.286 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.180 0.820 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.399 0.601 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.022 0.978 42 H 0.094 0.906 43 H 0.273 0.727 44 H 0.042 0.958 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.651 3.205 -1.572 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.151 5.151 3 C -0.074 4.074 4 C -0.207 4.207 5 C -0.108 4.108 6 C 0.298 3.702 7 O -0.423 6.423 8 N -0.356 5.356 9 C 0.009 3.991 10 H 0.090 0.910 11 C -0.149 4.149 12 C -0.149 4.149 13 C -0.174 4.174 14 C 0.005 3.995 15 N -0.308 5.308 16 C -0.475 4.475 17 H 0.083 0.917 18 C -0.219 4.219 19 N -0.547 5.547 20 Si 0.866 3.134 21 H -0.223 1.223 22 H -0.220 1.220 23 H -0.221 1.221 24 C 0.024 3.976 25 C -0.049 4.049 26 Cl 0.043 6.957 27 N -0.112 5.112 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.197 0.803 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.232 0.768 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.112 0.888 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.478 1.233 -1.771 17.611 hybrid contribution -0.617 1.299 0.391 1.490 sum -18.095 2.533 -1.380 18.324 Atomic orbital electron populations 1.21892 0.73507 1.04763 1.03436 1.48129 1.06436 1.03160 1.57401 1.22232 0.89869 0.93602 1.01711 1.19245 0.94268 0.91634 1.15504 1.19954 0.94948 0.99807 0.96081 1.20359 0.80418 0.78941 0.90433 1.90660 1.60310 1.45115 1.46214 1.45972 1.27962 1.50407 1.11250 1.22696 0.95936 0.97762 0.82738 0.90972 1.21659 0.97748 0.95671 0.99828 1.20941 0.96394 1.00313 0.97207 1.21090 0.95379 1.00082 1.00805 1.20588 0.94665 0.90784 0.93469 1.44367 1.01341 1.71848 1.13272 1.19934 1.00890 1.33881 0.92785 0.91709 1.25340 0.95989 1.00030 1.00503 1.70836 1.43592 1.00771 1.39472 0.83959 0.76220 0.77063 0.76170 1.22333 1.21979 1.22107 1.20604 0.86171 0.94899 0.95966 1.22560 0.89240 0.90971 1.02166 1.98428 1.33525 1.67055 1.96739 1.77337 1.00006 1.08012 1.25798 0.90576 0.89129 0.89189 0.80272 0.88422 0.87827 0.76763 0.93826 0.91002 0.91817 0.92753 0.94311 0.91033 0.95937 0.88767 0.91403 0.93979 0.94780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.66 11.47 59.85 0.69 1.35 16 2 N -0.37 -4.30 4.01 -68.16 -0.27 -4.57 16 3 C 0.07 0.80 11.40 -17.23 -0.20 0.61 16 4 C -0.19 -2.75 4.60 -105.02 -0.48 -3.23 16 5 C -0.07 -0.89 6.04 -29.04 -0.18 -1.07 16 6 C 0.51 8.71 7.63 -10.99 -0.08 8.63 16 7 O -0.55 -11.15 15.70 5.56 0.09 -11.06 16 8 N -0.71 -11.94 5.08 -52.15 -0.26 -12.21 16 9 C 0.12 2.10 2.91 -66.22 -0.19 1.91 16 10 H 0.07 1.33 7.58 -51.93 -0.39 0.93 16 11 C -0.11 -1.84 5.23 -27.19 -0.14 -1.98 16 12 C -0.11 -1.82 5.76 -28.41 -0.16 -1.99 16 13 C -0.13 -2.59 4.96 -30.19 -0.15 -2.74 16 14 C 0.13 2.87 5.22 -5.21 -0.03 2.84 16 15 N -0.59 -13.78 2.62 -175.40 -0.46 -14.24 16 16 C -0.35 -9.08 9.46 -15.06 -0.14 -9.22 16 17 H 0.07 1.77 8.05 -52.48 -0.42 1.35 16 18 C -0.02 -0.44 4.53 -17.43 -0.08 -0.52 16 19 N -0.90 -25.06 11.99 55.49 0.67 -24.40 16 20 Si 1.04 24.76 30.06 -169.99 -5.11 19.65 16 21 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.15 3.26 4.74 -4.93 -0.02 3.24 16 25 C 0.14 2.29 7.84 -17.30 -0.14 2.16 16 26 Cl 0.01 0.24 29.16 -51.86 -1.51 -1.27 16 27 N -0.29 -4.42 12.58 32.94 0.41 -4.01 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.40 6.37 8.44 -40.82 -0.34 6.02 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.33 6.58 -51.93 -0.34 0.99 16 37 H 0.06 1.06 6.28 -51.93 -0.33 0.74 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.54 4.65 -51.93 -0.24 1.30 16 41 H 0.02 0.47 8.13 -51.93 -0.42 0.05 16 42 H 0.09 2.39 5.61 -51.92 -0.29 2.10 16 43 H 0.27 7.32 4.95 -40.82 -0.20 7.12 16 44 H 0.04 1.00 7.80 -51.93 -0.41 0.59 16 45 H 0.03 0.70 6.89 -51.93 -0.36 0.34 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -33.16 372.44 -8.50 -41.65 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.35 Total: 4.85 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.31 Total: -0.02 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.08 Total: -59.42 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.11 Total: 19.65 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.51 Total: -1.27 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.16 -8.50 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034394772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.305 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds