Wall clock time and date at job start Sat Apr 11 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34946 * 126.02104 * 2 1 4 4 C 1.35312 * 107.76273 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.04372 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47193 * 100.00000 * 5 4 3 7 7 O 1.21282 * 119.99992 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00148 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99944 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.18525 * 34.56470 * 9 8 6 11 11 C 1.47097 * 109.32563 * 154.13303 * 9 8 6 12 12 C 1.52569 * 114.32059 * 183.05945 * 11 9 8 13 13 C 1.50876 * 109.36144 * 274.98885 * 12 11 9 14 14 C 1.53945 * 110.09737 * 91.89213 * 13 12 11 15 15 N 1.47580 * 112.11664 * 319.44404 * 14 13 12 16 16 C 1.36947 * 118.62192 * 137.87731 * 15 14 13 17 17 H 1.08000 * 119.99742 * 207.05481 * 16 15 14 18 18 C 1.38809 * 120.00133 * 27.05303 * 16 15 14 19 19 N 1.31625 * 119.99735 * 16.60275 * 18 16 15 20 20 Si 1.86794 * 119.99967 * 196.60224 * 18 16 15 21 21 H 1.48504 * 109.47023 * 94.74308 * 20 18 16 22 22 H 1.48508 * 109.46968 * 214.73843 * 20 18 16 23 23 H 1.48503 * 109.47303 * 334.73992 * 20 18 16 24 24 C 1.44579 * 122.73600 * 317.82602 * 15 14 13 25 25 C 1.39966 * 107.90873 * 0.24262 * 4 3 2 26 26 Cl 1.73598 * 125.91296 * 179.75842 * 25 4 3 27 27 N 1.30901 * 108.17335 * 359.59093 * 25 4 3 28 28 H 1.08995 * 109.47647 * 89.99867 * 1 2 3 29 29 H 1.09002 * 109.46823 * 209.99898 * 1 2 3 30 30 H 1.09003 * 109.47198 * 329.99258 * 1 2 3 31 31 H 1.08004 * 126.11921 * 359.94536 * 3 2 1 32 32 H 1.09000 * 109.47328 * 339.99715 * 5 4 3 33 33 H 1.09000 * 109.47339 * 219.99837 * 5 4 3 34 34 H 0.96996 * 119.99905 * 359.97438 * 8 6 5 35 35 H 1.08995 * 108.51114 * 304.31588 * 11 9 8 36 36 H 1.09002 * 108.51518 * 61.80890 * 11 9 8 37 37 H 1.09002 * 109.48939 * 34.96261 * 12 11 9 38 38 H 1.09002 * 109.48401 * 155.00126 * 12 11 9 39 39 H 1.09004 * 109.36510 * 212.08164 * 13 12 11 40 40 H 1.09000 * 109.36685 * 331.82386 * 13 12 11 41 41 H 1.08996 * 108.95192 * 80.11687 * 14 13 12 42 42 H 1.09004 * 108.94773 * 198.75259 * 14 13 12 43 43 H 0.97001 * 119.99529 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.44781 * 330.73624 * 24 15 14 45 45 H 1.09001 * 109.45049 * 210.79030 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2586 1.0914 0.0000 4 6 3.5436 0.6675 0.0006 5 6 4.7674 1.5469 0.0002 6 6 5.3190 1.6406 1.3995 7 8 4.7725 1.0510 2.3076 8 7 6.4203 2.3788 1.6417 9 6 6.9569 2.4694 3.0019 10 1 6.8029 1.5184 3.5118 11 6 8.3974 2.7604 2.9387 12 6 9.0894 2.8066 4.2976 13 6 8.9324 4.1844 4.8922 14 6 7.6747 4.2380 5.7783 15 7 6.5407 3.5085 5.1782 16 6 5.7640 2.7229 5.9874 17 1 5.2411 1.8730 5.5742 18 6 5.6489 3.0187 7.3387 19 7 6.0000 4.2063 7.7846 20 14 4.9958 1.7314 8.5243 21 1 6.1338 1.0012 9.1383 22 1 4.2021 2.3964 9.5889 23 1 4.1322 0.7734 7.7883 24 6 6.2152 3.5898 3.7719 25 6 3.5350 -0.7321 -0.0047 26 17 4.9348 -1.7589 -0.0121 27 7 2.2889 -1.1328 0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5140 31 1 1.9273 2.1194 -0.0008 32 1 4.4991 2.5429 -0.3520 33 1 5.5220 1.1191 -0.6598 34 1 6.8581 2.8495 0.9153 35 1 8.8788 1.9943 2.3310 36 1 8.5347 3.7237 2.4474 37 1 8.6366 2.0702 4.9615 38 1 10.1488 2.5821 4.1739 39 1 9.8095 4.4200 5.4950 40 1 8.8383 4.9159 4.0896 41 1 7.9057 3.7970 6.7479 42 1 7.3885 5.2796 5.9241 43 1 5.9192 4.4131 8.7289 44 1 6.5219 4.5612 3.3839 45 1 5.1397 3.4697 3.6407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034394773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:12 Heat of formation + Delta-G solvation = 60.145506 kcal Electronic energy + Delta-G solvation = -27908.509319 eV Core-core repulsion = 23989.490892 eV Total energy + Delta-G solvation = -3919.018427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45751 -39.42997 -37.56073 -36.75362 -34.45833 -33.63304 -33.14105 -32.01532 -30.84716 -30.06522 -28.33083 -26.16894 -25.63477 -24.11597 -22.98628 -21.41331 -21.02547 -20.11471 -19.75864 -19.10435 -17.18543 -16.72493 -16.52329 -15.84161 -15.63613 -15.17982 -15.10383 -14.57507 -14.45700 -13.77992 -13.65361 -13.60118 -13.41096 -13.20792 -13.01294 -12.70299 -12.48880 -12.43841 -12.04273 -11.94743 -11.71048 -11.57189 -11.41014 -11.00969 -10.84866 -10.70977 -10.58111 -10.50570 -10.06623 -10.03995 -9.67973 -9.58993 -9.50862 -9.46086 -9.31857 -8.68511 -8.52738 -8.25170 -6.56315 -5.69333 -3.12410 1.43000 1.62819 2.38718 2.76167 3.10721 3.45556 3.52282 3.57047 3.67671 4.32497 4.60864 4.61317 4.86751 4.89065 5.07146 5.14396 5.25179 5.31736 5.40510 5.42786 5.49161 5.51678 5.58917 5.79421 5.83477 6.04171 6.09944 6.11578 6.21427 6.37521 6.45296 6.64686 6.69421 6.72419 6.81751 6.84005 6.91630 6.99780 7.20676 7.32389 7.49351 7.76141 7.97195 7.98771 8.58193 8.73894 9.34547 9.99984 10.43770 11.38333 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.003416 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.013641 B = 8193.699445 C = 9395.896631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.364 5.364 3 C 0.078 3.922 4 C -0.201 4.201 5 C -0.064 4.064 6 C 0.506 3.494 7 O -0.518 6.518 8 N -0.727 5.727 9 C 0.115 3.885 10 H 0.086 0.914 11 C -0.111 4.111 12 C -0.101 4.101 13 C -0.143 4.143 14 C 0.177 3.823 15 N -0.584 5.584 16 C -0.253 4.253 17 H 0.069 0.931 18 C 0.005 3.995 19 N -0.906 5.906 20 Si 0.897 3.103 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.278 1.278 24 C 0.160 3.840 25 C 0.143 3.857 26 Cl 0.005 6.995 27 N -0.285 5.285 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.183 0.817 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.390 0.610 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.024 0.976 43 H 0.251 0.749 44 H 0.029 0.971 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.996 -2.879 -20.647 21.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.147 5.147 3 C -0.068 4.068 4 C -0.213 4.213 5 C -0.105 4.105 6 C 0.290 3.710 7 O -0.393 6.393 8 N -0.379 5.379 9 C 0.009 3.991 10 H 0.104 0.896 11 C -0.149 4.149 12 C -0.139 4.139 13 C -0.182 4.182 14 C 0.052 3.948 15 N -0.305 5.305 16 C -0.383 4.383 17 H 0.087 0.913 18 C -0.193 4.193 19 N -0.551 5.551 20 Si 0.727 3.273 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.203 1.203 24 C 0.030 3.970 25 C -0.049 4.049 26 Cl 0.032 6.968 27 N -0.110 5.110 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.200 0.800 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.223 0.777 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.042 0.958 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.245 -4.319 -19.781 20.687 hybrid contribution 0.528 0.223 0.378 0.687 sum -3.717 -4.096 -19.403 20.176 Atomic orbital electron populations 1.21935 0.73278 1.05077 1.03456 1.48144 1.06562 1.03078 1.56955 1.22301 0.89834 0.93761 1.00889 1.19196 0.94349 0.91469 1.16286 1.19945 0.94822 0.99980 0.95747 1.20459 0.80739 0.79221 0.90531 1.90776 1.58212 1.44310 1.45967 1.46164 1.29402 1.51193 1.11116 1.21198 0.93345 1.03411 0.81180 0.89571 1.20565 0.95325 1.00624 0.98350 1.20830 0.97941 0.99217 0.95941 1.22071 1.00283 0.95945 0.99879 1.21020 0.83433 0.95640 0.94718 1.43577 1.29970 1.54655 1.02292 1.19331 1.23707 1.05155 0.90083 0.91328 1.24994 1.00087 0.95870 0.98364 1.70092 1.52622 1.18551 1.13815 0.86339 0.78524 0.81434 0.80998 1.21528 1.21913 1.20283 1.20902 0.97159 0.93546 0.85397 1.22428 0.89050 0.90641 1.02744 1.98385 1.34250 1.67259 1.96873 1.77323 0.99955 1.08212 1.25521 0.90503 0.89024 0.88930 0.80045 0.88184 0.88384 0.77735 0.93483 0.92937 0.90517 0.93491 0.92985 0.93693 0.90925 0.95779 0.93877 0.95259 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.47 59.85 0.69 1.37 16 2 N -0.36 -4.22 4.01 -68.16 -0.27 -4.50 16 3 C 0.08 0.86 11.40 -17.23 -0.20 0.66 16 4 C -0.20 -2.59 4.60 -105.02 -0.48 -3.08 16 5 C -0.06 -0.69 6.04 -29.04 -0.18 -0.87 16 6 C 0.51 7.83 7.79 -10.98 -0.09 7.74 16 7 O -0.52 -10.89 15.68 5.56 0.09 -10.80 16 8 N -0.73 -10.27 5.05 -55.62 -0.28 -10.55 16 9 C 0.12 2.07 2.35 -69.78 -0.16 1.91 16 10 H 0.09 1.90 7.55 -51.93 -0.39 1.51 16 11 C -0.11 -1.71 4.55 -29.79 -0.14 -1.85 16 12 C -0.10 -1.74 5.51 -28.02 -0.15 -1.90 16 13 C -0.14 -2.62 5.71 -27.30 -0.16 -2.78 16 14 C 0.18 4.20 4.67 -2.96 -0.01 4.18 16 15 N -0.58 -14.62 2.27 -172.11 -0.39 -15.01 16 16 C -0.25 -7.17 9.43 -15.06 -0.14 -7.31 16 17 H 0.07 2.04 7.88 -52.49 -0.41 1.62 16 18 C 0.00 0.14 4.84 -17.43 -0.08 0.06 16 19 N -0.91 -26.65 11.11 55.49 0.62 -26.03 16 20 Si 0.90 22.78 29.58 -169.99 -5.03 17.75 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.16 3.41 5.24 -4.09 -0.02 3.39 16 25 C 0.14 2.10 7.84 -17.30 -0.14 1.97 16 26 Cl 0.00 0.06 29.16 -51.86 -1.51 -1.45 16 27 N -0.28 -4.23 12.58 32.94 0.41 -3.81 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.39 3.99 8.58 -40.82 -0.35 3.64 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.73 7.36 -51.93 -0.38 0.35 16 37 H 0.08 1.56 7.48 -51.93 -0.39 1.17 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.04 0.77 7.32 -51.93 -0.38 0.39 16 41 H 0.07 1.93 6.40 -51.93 -0.33 1.60 16 42 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 45 H 0.05 1.12 7.98 -51.93 -0.41 0.70 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -36.08 380.33 -8.72 -44.81 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.83 Total: 0.36 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -1.26 Total: 3.50 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.09 Total: -59.90 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.03 Total: 17.75 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.51 Total: -1.45 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.08 -8.72 -44.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034394773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.955 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds