Wall clock time and date at job start Sat Apr 11 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34946 * 126.02104 * 2 1 4 4 C 1.35312 * 107.76273 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.04372 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47193 * 100.00000 * 5 4 3 7 7 O 1.21282 * 119.99992 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00148 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99944 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.18525 * 34.56470 * 9 8 6 11 11 C 1.47097 * 109.32563 * 154.13303 * 9 8 6 12 12 C 1.52569 * 114.32059 * 183.05945 * 11 9 8 13 13 C 1.50876 * 109.36144 * 274.98885 * 12 11 9 14 14 C 1.53945 * 110.09737 * 91.89213 * 13 12 11 15 15 N 1.47580 * 112.11664 * 319.44404 * 14 13 12 16 16 C 1.36947 * 118.62192 * 137.87731 * 15 14 13 17 17 H 1.08000 * 119.99742 * 207.05481 * 16 15 14 18 18 C 1.38809 * 120.00133 * 27.05303 * 16 15 14 19 19 N 1.31625 * 119.99735 * 16.60275 * 18 16 15 20 20 Si 1.86794 * 119.99967 * 196.60224 * 18 16 15 21 21 H 1.48504 * 109.47023 * 94.74308 * 20 18 16 22 22 H 1.48508 * 109.46968 * 214.73843 * 20 18 16 23 23 H 1.48503 * 109.47303 * 334.73992 * 20 18 16 24 24 C 1.44579 * 122.73600 * 317.82602 * 15 14 13 25 25 C 1.39966 * 107.90873 * 0.24262 * 4 3 2 26 26 Cl 1.73598 * 125.91296 * 179.75842 * 25 4 3 27 27 N 1.30901 * 108.17335 * 359.59093 * 25 4 3 28 28 H 1.08995 * 109.47647 * 89.99867 * 1 2 3 29 29 H 1.09002 * 109.46823 * 209.99898 * 1 2 3 30 30 H 1.09003 * 109.47198 * 329.99258 * 1 2 3 31 31 H 1.08004 * 126.11921 * 359.94536 * 3 2 1 32 32 H 1.09000 * 109.47328 * 339.99715 * 5 4 3 33 33 H 1.09000 * 109.47339 * 219.99837 * 5 4 3 34 34 H 0.96996 * 119.99905 * 359.97438 * 8 6 5 35 35 H 1.08995 * 108.51114 * 304.31588 * 11 9 8 36 36 H 1.09002 * 108.51518 * 61.80890 * 11 9 8 37 37 H 1.09002 * 109.48939 * 34.96261 * 12 11 9 38 38 H 1.09002 * 109.48401 * 155.00126 * 12 11 9 39 39 H 1.09004 * 109.36510 * 212.08164 * 13 12 11 40 40 H 1.09000 * 109.36685 * 331.82386 * 13 12 11 41 41 H 1.08996 * 108.95192 * 80.11687 * 14 13 12 42 42 H 1.09004 * 108.94773 * 198.75259 * 14 13 12 43 43 H 0.97001 * 119.99529 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.44781 * 330.73624 * 24 15 14 45 45 H 1.09001 * 109.45049 * 210.79030 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2586 1.0914 0.0000 4 6 3.5436 0.6675 0.0006 5 6 4.7674 1.5469 0.0002 6 6 5.3190 1.6406 1.3995 7 8 4.7725 1.0510 2.3076 8 7 6.4203 2.3788 1.6417 9 6 6.9569 2.4694 3.0019 10 1 6.8029 1.5184 3.5118 11 6 8.3974 2.7604 2.9387 12 6 9.0894 2.8066 4.2976 13 6 8.9324 4.1844 4.8922 14 6 7.6747 4.2380 5.7783 15 7 6.5407 3.5085 5.1782 16 6 5.7640 2.7229 5.9874 17 1 5.2411 1.8730 5.5742 18 6 5.6489 3.0187 7.3387 19 7 6.0000 4.2063 7.7846 20 14 4.9958 1.7314 8.5243 21 1 6.1338 1.0012 9.1383 22 1 4.2021 2.3964 9.5889 23 1 4.1322 0.7734 7.7883 24 6 6.2152 3.5898 3.7719 25 6 3.5350 -0.7321 -0.0047 26 17 4.9348 -1.7589 -0.0121 27 7 2.2889 -1.1328 0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5140 31 1 1.9273 2.1194 -0.0008 32 1 4.4991 2.5429 -0.3520 33 1 5.5220 1.1191 -0.6598 34 1 6.8581 2.8495 0.9153 35 1 8.8788 1.9943 2.3310 36 1 8.5347 3.7237 2.4474 37 1 8.6366 2.0702 4.9615 38 1 10.1488 2.5821 4.1739 39 1 9.8095 4.4200 5.4950 40 1 8.8383 4.9159 4.0896 41 1 7.9057 3.7970 6.7479 42 1 7.3885 5.2796 5.9241 43 1 5.9192 4.4131 8.7289 44 1 6.5219 4.5612 3.3839 45 1 5.1397 3.4697 3.6407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034394773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:11 Heat of formation + Delta-G solvation = 35.090404 kcal Electronic energy + Delta-G solvation = -27909.595790 eV Core-core repulsion = 23989.490892 eV Total energy + Delta-G solvation = -3920.104898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.35353 -40.77277 -39.09942 -37.76947 -36.13025 -34.74538 -34.48281 -33.03571 -32.79040 -31.48354 -29.20651 -27.86006 -26.78140 -25.68172 -24.76174 -22.28620 -22.13516 -21.52508 -21.05833 -20.68745 -18.57503 -18.13603 -17.81067 -17.29789 -16.58525 -16.50320 -16.36018 -16.02238 -15.89822 -15.42617 -15.02869 -14.72481 -14.54845 -14.35728 -14.13431 -14.06687 -13.91971 -13.75108 -13.30491 -13.10156 -12.98968 -12.89239 -12.74451 -12.58721 -12.51912 -12.42670 -12.26796 -12.04822 -11.60315 -11.54741 -11.43698 -11.33347 -11.10308 -10.74332 -10.49670 -10.29420 -9.98073 -9.43694 -8.60541 -7.87800 -5.32798 0.49942 0.74788 1.38840 1.40344 1.41713 1.50831 1.92223 1.97847 2.43410 2.56408 3.24398 3.55815 3.76181 3.88254 3.97826 4.06226 4.17660 4.24735 4.33984 4.39992 4.43591 4.51779 4.58055 4.60299 4.68394 4.72098 4.78537 4.81303 4.98882 5.03537 5.09399 5.17423 5.20004 5.28804 5.34618 5.40765 5.51319 5.64776 5.72469 5.79519 5.84028 5.99183 6.40356 6.41480 6.85691 7.19162 7.60073 7.96993 8.30888 9.16111 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.003416 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.013641 B = 8193.699445 C = 9395.896631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.364 5.364 3 C 0.086 3.914 4 C -0.226 4.226 5 C -0.051 4.051 6 C 0.502 3.498 7 O -0.581 6.581 8 N -0.712 5.712 9 C 0.136 3.864 10 H 0.037 0.963 11 C -0.108 4.108 12 C -0.099 4.099 13 C -0.129 4.129 14 C 0.185 3.815 15 N -0.597 5.597 16 C -0.258 4.258 17 H 0.044 0.956 18 C -0.039 4.039 19 N -0.928 5.928 20 Si 0.952 3.048 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.284 1.284 24 C 0.161 3.839 25 C 0.121 3.879 26 Cl -0.003 7.003 27 N -0.326 5.326 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.223 0.777 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.416 0.584 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.035 0.965 42 H -0.003 1.003 43 H 0.250 0.750 44 H 0.051 0.949 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 -1.490 -23.246 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.147 5.147 3 C -0.061 4.061 4 C -0.239 4.239 5 C -0.091 4.091 6 C 0.290 3.710 7 O -0.460 6.460 8 N -0.365 5.365 9 C 0.028 3.972 10 H 0.055 0.945 11 C -0.145 4.145 12 C -0.138 4.138 13 C -0.168 4.168 14 C 0.060 3.940 15 N -0.319 5.319 16 C -0.389 4.389 17 H 0.061 0.939 18 C -0.235 4.235 19 N -0.575 5.575 20 Si 0.781 3.219 21 H -0.209 1.209 22 H -0.213 1.213 23 H -0.209 1.209 24 C 0.033 3.967 25 C -0.070 4.070 26 Cl 0.024 6.976 27 N -0.153 5.153 28 H 0.119 0.881 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.239 0.761 32 H 0.160 0.840 33 H 0.138 0.862 34 H 0.253 0.747 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.015 0.985 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -3.463 -2.920 -22.452 22.905 hybrid contribution 0.174 -0.196 1.155 1.184 sum -3.289 -3.116 -21.297 21.774 Atomic orbital electron populations 1.22336 0.70823 1.06113 1.05384 1.48584 1.07959 1.02503 1.55650 1.22996 0.89259 0.95187 0.98699 1.19556 0.95949 0.90934 1.17437 1.19990 0.94532 1.02143 0.92467 1.21369 0.80043 0.77743 0.91871 1.90764 1.60029 1.46788 1.48392 1.45927 1.29196 1.51114 1.10231 1.20597 0.94931 0.99256 0.82414 0.94507 1.20507 0.92918 1.03169 0.97952 1.20815 0.99890 0.97086 0.95975 1.21928 0.97592 0.97509 0.99773 1.20841 0.85360 0.93165 0.94646 1.43715 1.30343 1.54349 1.03512 1.19295 1.23759 1.04831 0.90970 0.93857 1.25557 1.01028 0.97456 0.99470 1.70204 1.53773 1.19683 1.13798 0.85495 0.77986 0.79312 0.79151 1.20894 1.21330 1.20925 1.20991 0.95830 0.95828 0.84065 1.22713 0.89023 0.91621 1.03601 1.98364 1.34610 1.67645 1.96951 1.77210 1.00632 1.10393 1.27047 0.88103 0.89530 0.86374 0.76064 0.83976 0.86154 0.74723 0.90900 0.89840 0.94656 0.90076 0.91210 0.91286 0.94663 0.98523 0.94097 0.93088 0.96715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 11.47 127.77 1.47 2.52 16 2 N -0.36 -7.97 4.01 -369.57 -1.48 -9.46 16 3 C 0.09 1.69 11.40 83.54 0.95 2.64 16 4 C -0.23 -5.51 4.60 -20.12 -0.09 -5.60 16 5 C -0.05 -0.96 6.04 29.10 0.18 -0.79 16 6 C 0.50 14.97 7.79 87.66 0.68 15.65 16 7 O -0.58 -25.07 15.68 -3.04 -0.05 -25.12 16 8 N -0.71 -18.51 5.05 -448.27 -2.27 -20.78 16 9 C 0.14 4.77 2.35 43.79 0.10 4.87 16 10 H 0.04 1.68 7.55 -2.39 -0.02 1.67 16 11 C -0.11 -2.98 4.55 28.62 0.13 -2.85 16 12 C -0.10 -3.20 5.51 29.76 0.16 -3.04 16 13 C -0.13 -4.48 5.71 30.22 0.17 -4.30 16 14 C 0.18 8.92 4.67 86.49 0.40 9.32 16 15 N -0.60 -30.78 2.27 -698.43 -1.58 -32.37 16 16 C -0.26 -15.30 9.43 84.03 0.79 -14.50 16 17 H 0.04 2.75 7.88 -2.91 -0.02 2.73 16 18 C -0.04 -2.33 4.84 84.86 0.41 -1.92 16 19 N -0.93 -56.34 11.11 21.65 0.24 -56.10 16 20 Si 0.95 48.44 29.58 68.60 2.03 50.47 16 21 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.28 -14.58 7.11 99.48 0.71 -13.87 16 24 C 0.16 6.90 5.24 87.37 0.46 7.35 16 25 C 0.12 3.55 7.84 85.25 0.67 4.22 16 26 Cl 0.00 -0.10 29.16 -2.72 -0.08 -0.17 16 27 N -0.33 -9.74 12.58 -49.68 -0.62 -10.36 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.22 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.42 6.72 8.58 -92.71 -0.80 5.92 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.87 7.36 -2.39 -0.02 1.86 16 37 H 0.03 1.44 7.48 -2.39 -0.02 1.42 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.07 2.09 7.32 -2.39 -0.02 2.07 16 41 H 0.03 1.93 6.40 -2.39 -0.02 1.92 16 42 H 0.00 -0.18 8.03 -2.39 -0.02 -0.19 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.87 16 44 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 45 H 0.01 0.70 7.98 -2.39 -0.02 0.69 16 Total: -1.00 -86.23 380.33 2.88 -83.34 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.21 Total: 6.96 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 6.49 Total: 13.58 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -5.71 Total: -129.06 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.05 Total: -25.12 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.47 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.08 Total: -0.17 kcal Total: -86.23 2.88 -83.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034394773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.432 kcal (2) G-P(sol) polarization free energy of solvation -86.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds