Wall clock time and date at job start Sat Apr 11 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34945 * 126.02441 * 2 1 4 4 C 1.35308 * 107.76307 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.04467 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47373 * 99.99834 * 5 4 3 7 7 O 1.21275 * 119.99632 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99875 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99664 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46915 * 35.00835 * 9 8 6 11 11 C 1.53002 * 109.46729 * 155.00120 * 9 8 6 12 12 C 1.52997 * 109.46978 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47415 * 300.00098 * 12 11 9 14 14 H 1.09002 * 109.47070 * 300.00053 * 13 12 11 15 15 N 1.46505 * 109.47411 * 179.97438 * 13 12 11 16 16 C 1.36931 * 119.99990 * 155.00183 * 15 13 12 17 17 H 1.08004 * 120.00112 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00062 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99605 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47337 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47162 * 120.00013 * 20 18 16 23 23 H 1.48505 * 109.47103 * 239.99925 * 20 18 16 24 24 C 1.52997 * 109.46817 * 59.99873 * 13 12 11 25 25 C 1.52992 * 109.47482 * 300.00014 * 24 13 12 26 26 C 1.39965 * 107.90876 * 0.24547 * 4 3 2 27 27 Cl 1.73604 * 125.91186 * 179.75579 * 26 4 3 28 28 N 1.30895 * 108.17730 * 359.58996 * 26 4 3 29 29 H 1.08995 * 109.46909 * 89.99390 * 1 2 3 30 30 H 1.08995 * 109.47273 * 209.99574 * 1 2 3 31 31 H 1.08995 * 109.46883 * 330.00054 * 1 2 3 32 32 H 1.08000 * 126.11809 * 359.97438 * 3 2 1 33 33 H 1.09006 * 109.46984 * 339.99501 * 5 4 3 34 34 H 1.09006 * 109.47060 * 220.00339 * 5 4 3 35 35 H 0.97000 * 119.99923 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47097 * 60.00183 * 11 9 8 37 37 H 1.08998 * 109.47844 * 300.00398 * 11 9 8 38 38 H 1.09000 * 109.47140 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.47497 * 60.00450 * 12 11 9 40 40 H 0.97005 * 119.99239 * 335.00029 * 15 13 12 41 41 H 0.96998 * 119.99451 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.47153 * 60.00231 * 24 13 12 43 43 H 1.08998 * 109.47533 * 179.97438 * 24 13 12 44 44 H 1.09002 * 109.47103 * 300.00247 * 25 24 13 45 45 H 1.08996 * 109.47747 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2587 1.0914 0.0000 4 6 3.5437 0.6674 0.0006 5 6 4.7676 1.5467 0.0002 6 6 5.3192 1.6404 1.3995 7 8 4.7721 1.0516 2.3077 8 7 6.4206 2.3786 1.6416 9 6 6.9565 2.4702 3.0020 10 1 6.8115 1.5191 3.5144 11 6 8.4506 2.7938 2.9407 12 6 9.0102 2.8900 4.3614 13 6 8.2794 3.9973 5.1236 14 1 8.4245 4.9481 4.6107 15 7 8.8148 4.0891 6.4842 16 6 8.7222 5.2657 7.1785 17 1 8.2549 6.1262 6.7229 18 6 9.2300 5.3528 8.4675 19 7 9.8000 4.3042 9.0224 20 14 9.1031 6.9577 9.4148 21 1 8.4238 7.9762 8.5745 22 1 8.3203 6.7384 10.6575 23 1 10.4651 7.4345 9.7655 24 6 6.7853 3.6736 5.1848 25 6 6.2256 3.5774 3.7641 26 6 3.5351 -0.7322 -0.0048 27 17 4.9348 -1.7591 -0.0123 28 7 2.2890 -1.1329 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.9276 2.1194 -0.0004 33 1 4.4993 2.5427 -0.3521 34 1 5.5221 1.1189 -0.6599 35 1 6.8579 2.8498 0.9153 36 1 8.5957 3.7448 2.4283 37 1 8.9713 2.0053 2.3974 38 1 10.0745 3.1211 4.3178 39 1 8.8652 1.9392 4.8743 40 1 9.2348 3.3162 6.8932 41 1 10.1545 4.3650 9.9233 42 1 6.6402 2.7228 5.6976 43 1 6.2646 4.4621 5.7281 44 1 6.3707 4.5282 3.2513 45 1 5.1613 3.3464 3.8077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034734975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:16 Heat of formation + Delta-G solvation = 34.146956 kcal Electronic energy + Delta-G solvation = -26711.193488 eV Core-core repulsion = 22791.047679 eV Total energy + Delta-G solvation = -3920.145809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.68496 -39.80826 -37.88829 -36.95312 -34.79464 -33.86788 -33.01329 -32.15737 -30.60547 -30.35531 -28.82386 -27.28552 -25.90097 -23.56470 -22.33055 -21.63668 -21.55921 -20.72128 -20.22723 -19.37784 -17.47987 -17.16337 -16.82684 -16.11046 -15.86096 -15.42073 -15.21621 -15.03666 -14.22463 -13.99955 -13.83727 -13.76678 -13.66051 -13.52056 -13.30397 -13.05561 -12.87500 -12.46728 -12.20145 -11.95331 -11.90519 -11.77327 -11.74208 -11.38761 -10.98352 -10.80279 -10.79397 -10.71763 -10.63033 -10.12913 -10.05950 -9.84913 -9.70841 -9.59243 -9.52950 -8.89470 -8.81458 -8.76403 -6.90819 -5.72983 -3.01173 1.23062 1.40899 2.15629 2.54725 2.71061 3.30747 3.45022 3.50397 3.52795 4.10758 4.38787 4.61466 4.62831 4.69136 4.82757 4.87164 4.96412 5.04051 5.12014 5.17582 5.26032 5.34158 5.55643 5.55927 5.67194 5.72898 5.79042 5.84829 5.92243 5.93001 6.07871 6.29407 6.33141 6.37118 6.50861 6.53058 6.62468 6.72589 6.77192 7.03203 7.11125 7.19429 7.56721 7.73784 8.31552 8.46025 9.56843 10.16125 10.50571 11.49934 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020797 B = 0.002043 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.039874 B =13698.718661 C =14302.531133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.363 5.363 3 C 0.078 3.922 4 C -0.204 4.204 5 C -0.064 4.064 6 C 0.510 3.490 7 O -0.527 6.527 8 N -0.728 5.728 9 C 0.146 3.854 10 H 0.086 0.914 11 C -0.118 4.118 12 C -0.121 4.121 13 C 0.178 3.822 14 H 0.046 0.954 15 N -0.726 5.726 16 C -0.235 4.235 17 H 0.070 0.930 18 C -0.016 4.016 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.132 4.132 25 C -0.122 4.122 26 C 0.142 3.858 27 Cl 0.007 6.993 28 N -0.283 5.283 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.182 0.818 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.397 0.603 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.100 -6.816 -26.241 31.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.146 5.146 3 C -0.068 4.068 4 C -0.216 4.216 5 C -0.105 4.105 6 C 0.296 3.704 7 O -0.402 6.402 8 N -0.380 5.380 9 C 0.042 3.958 10 H 0.104 0.896 11 C -0.157 4.157 12 C -0.160 4.160 13 C 0.068 3.932 14 H 0.064 0.936 15 N -0.366 5.366 16 C -0.366 4.366 17 H 0.088 0.912 18 C -0.212 4.212 19 N -0.582 5.582 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.173 4.173 25 C -0.161 4.161 26 C -0.050 4.050 27 Cl 0.035 6.965 28 N -0.108 5.108 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.199 0.801 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.230 0.770 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.346 -8.166 -25.496 31.368 hybrid contribution 0.817 1.449 0.486 1.732 sum -15.530 -6.718 -25.010 30.196 Atomic orbital electron populations 1.21957 0.73147 1.05075 1.03646 1.48180 1.06632 1.03059 1.56768 1.22299 0.89820 0.93790 1.00891 1.19176 0.94280 0.91477 1.16679 1.19942 0.95013 1.00224 0.95353 1.20554 0.80419 0.78679 0.90781 1.90733 1.58595 1.44683 1.46224 1.46160 1.29383 1.51290 1.11128 1.21071 0.92921 1.00218 0.81569 0.89579 1.21741 0.93843 1.01508 0.98581 1.21753 1.00168 1.00290 0.93762 1.20238 0.90527 0.95476 0.86997 0.93643 1.42448 1.69803 1.12912 1.11458 1.19285 1.31379 0.90109 0.95827 0.91198 1.24747 1.01545 0.97419 0.97501 1.69676 1.44759 1.28555 1.15202 0.86139 0.77138 0.83079 0.79982 1.20612 1.21939 1.21948 1.22217 0.99332 1.01870 0.93896 1.21878 0.99456 0.97659 0.97143 1.22461 0.89161 0.90653 1.02723 1.98395 1.34086 1.67210 1.96856 1.77356 0.99948 1.08159 1.25340 0.90361 0.88939 0.88931 0.80052 0.87963 0.88040 0.77002 0.91629 0.91907 0.91429 0.92008 0.78314 0.93626 0.92561 0.91933 0.92413 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.45 11.47 59.85 0.69 1.13 16 2 N -0.36 -3.31 4.01 -68.16 -0.27 -3.58 16 3 C 0.08 0.65 11.40 -17.23 -0.20 0.45 16 4 C -0.20 -2.07 4.60 -105.02 -0.48 -2.55 16 5 C -0.06 -0.51 6.04 -29.03 -0.18 -0.69 16 6 C 0.51 5.95 7.79 -10.98 -0.09 5.87 16 7 O -0.53 -8.68 15.70 5.56 0.09 -8.60 16 8 N -0.73 -7.45 5.08 -53.81 -0.27 -7.72 16 9 C 0.15 1.92 2.46 -67.93 -0.17 1.75 16 10 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 11 C -0.12 -1.45 5.39 -26.73 -0.14 -1.60 16 12 C -0.12 -1.95 5.39 -26.73 -0.14 -2.09 16 13 C 0.18 3.48 2.77 -67.93 -0.19 3.29 16 14 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 15 N -0.73 -18.27 5.12 -53.42 -0.27 -18.54 16 16 C -0.23 -6.54 9.93 -15.06 -0.15 -6.69 16 17 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 18 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 19 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 20 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 C -0.13 -2.43 5.50 -26.74 -0.15 -2.58 16 25 C -0.12 -1.80 5.49 -26.73 -0.15 -1.95 16 26 C 0.14 1.73 7.84 -17.30 -0.14 1.59 16 27 Cl 0.01 0.08 29.16 -51.86 -1.51 -1.43 16 28 N -0.28 -3.52 12.58 32.94 0.41 -3.11 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.40 2.73 8.60 -40.82 -0.35 2.38 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.38 10.30 7.80 -40.82 -0.32 9.98 16 41 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -36.54 389.23 -8.78 -45.33 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.95 Total: 6.64 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.57 Total: -4.62 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.32 Total: -60.73 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 17 Polarization: 0.08 SS G_CDS: -1.51 Total: -1.43 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.54 -8.78 -45.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034734975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.474 kcal (2) G-P(sol) polarization free energy of solvation -36.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds