Wall clock time and date at job start Sat Apr 11 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.34945 * 126.02441 * 2 1 4 4 C 1.35308 * 107.76307 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.04467 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47373 * 99.99834 * 5 4 3 7 7 O 1.21275 * 119.99632 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99875 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99664 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46915 * 35.00835 * 9 8 6 11 11 C 1.53002 * 109.46729 * 155.00120 * 9 8 6 12 12 C 1.52997 * 109.46978 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47415 * 300.00098 * 12 11 9 14 14 H 1.09002 * 109.47070 * 300.00053 * 13 12 11 15 15 N 1.46505 * 109.47411 * 179.97438 * 13 12 11 16 16 C 1.36931 * 119.99990 * 155.00183 * 15 13 12 17 17 H 1.08004 * 120.00112 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00062 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99605 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00140 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47337 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47162 * 120.00013 * 20 18 16 23 23 H 1.48505 * 109.47103 * 239.99925 * 20 18 16 24 24 C 1.52997 * 109.46817 * 59.99873 * 13 12 11 25 25 C 1.52992 * 109.47482 * 300.00014 * 24 13 12 26 26 C 1.39965 * 107.90876 * 0.24547 * 4 3 2 27 27 Cl 1.73604 * 125.91186 * 179.75579 * 26 4 3 28 28 N 1.30895 * 108.17730 * 359.58996 * 26 4 3 29 29 H 1.08995 * 109.46909 * 89.99390 * 1 2 3 30 30 H 1.08995 * 109.47273 * 209.99574 * 1 2 3 31 31 H 1.08995 * 109.46883 * 330.00054 * 1 2 3 32 32 H 1.08000 * 126.11809 * 359.97438 * 3 2 1 33 33 H 1.09006 * 109.46984 * 339.99501 * 5 4 3 34 34 H 1.09006 * 109.47060 * 220.00339 * 5 4 3 35 35 H 0.97000 * 119.99923 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47097 * 60.00183 * 11 9 8 37 37 H 1.08998 * 109.47844 * 300.00398 * 11 9 8 38 38 H 1.09000 * 109.47140 * 180.02562 * 12 11 9 39 39 H 1.09002 * 109.47497 * 60.00450 * 12 11 9 40 40 H 0.97005 * 119.99239 * 335.00029 * 15 13 12 41 41 H 0.96998 * 119.99451 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.47153 * 60.00231 * 24 13 12 43 43 H 1.08998 * 109.47533 * 179.97438 * 24 13 12 44 44 H 1.09002 * 109.47103 * 300.00247 * 25 24 13 45 45 H 1.08996 * 109.47747 * 179.97438 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2587 1.0914 0.0000 4 6 3.5437 0.6674 0.0006 5 6 4.7676 1.5467 0.0002 6 6 5.3192 1.6404 1.3995 7 8 4.7721 1.0516 2.3077 8 7 6.4206 2.3786 1.6416 9 6 6.9565 2.4702 3.0020 10 1 6.8115 1.5191 3.5144 11 6 8.4506 2.7938 2.9407 12 6 9.0102 2.8900 4.3614 13 6 8.2794 3.9973 5.1236 14 1 8.4245 4.9481 4.6107 15 7 8.8148 4.0891 6.4842 16 6 8.7222 5.2657 7.1785 17 1 8.2549 6.1262 6.7229 18 6 9.2300 5.3528 8.4675 19 7 9.8000 4.3042 9.0224 20 14 9.1031 6.9577 9.4148 21 1 8.4238 7.9762 8.5745 22 1 8.3203 6.7384 10.6575 23 1 10.4651 7.4345 9.7655 24 6 6.7853 3.6736 5.1848 25 6 6.2256 3.5774 3.7641 26 6 3.5351 -0.7322 -0.0048 27 17 4.9348 -1.7591 -0.0123 28 7 2.2890 -1.1329 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.9276 2.1194 -0.0004 33 1 4.4993 2.5427 -0.3521 34 1 5.5221 1.1189 -0.6599 35 1 6.8579 2.8498 0.9153 36 1 8.5957 3.7448 2.4283 37 1 8.9713 2.0053 2.3974 38 1 10.0745 3.1211 4.3178 39 1 8.8652 1.9392 4.8743 40 1 9.2348 3.3162 6.8932 41 1 10.1545 4.3650 9.9233 42 1 6.6402 2.7228 5.6976 43 1 6.2646 4.4621 5.7281 44 1 6.3707 4.5282 3.2513 45 1 5.1613 3.3464 3.8077 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034734975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:16 Heat of formation + Delta-G solvation = 8.178135 kcal Electronic energy + Delta-G solvation = -26712.319581 eV Core-core repulsion = 22791.047679 eV Total energy + Delta-G solvation = -3921.271901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.35598 -40.81860 -39.16708 -37.76305 -36.30416 -34.58611 -34.44739 -32.99044 -32.25125 -31.64798 -29.68540 -28.51517 -26.66583 -25.43778 -23.61115 -22.71925 -22.28397 -21.73541 -21.18390 -20.67878 -19.11165 -18.12329 -17.79046 -17.16674 -16.76867 -16.48455 -16.20226 -15.96155 -15.75530 -15.37057 -15.04988 -14.86418 -14.73286 -14.40262 -14.34062 -13.99749 -13.90152 -13.46121 -13.26001 -13.12727 -13.05010 -12.88559 -12.77372 -12.58402 -12.50675 -12.37705 -12.23661 -12.07636 -11.99351 -11.63655 -11.53705 -11.42201 -11.16174 -10.86497 -10.74342 -10.29672 -9.88645 -9.43981 -8.98154 -7.92526 -5.20581 0.51260 0.75247 1.41805 1.47132 1.48199 1.58024 1.85365 1.97983 2.44690 2.57890 3.40554 3.56056 3.80242 3.86100 3.89177 3.95041 4.07588 4.29811 4.34100 4.38629 4.42102 4.44500 4.45481 4.59719 4.61386 4.64184 4.70056 4.70482 4.73330 4.91060 4.98985 5.04778 5.15977 5.18680 5.23820 5.29191 5.32036 5.51217 5.57839 5.64973 5.69885 5.99859 6.30456 6.41196 6.78858 7.35415 7.50289 8.13659 8.35717 9.31572 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020797 B = 0.002043 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.039874 B =13698.718661 C =14302.531133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.363 5.363 3 C 0.088 3.912 4 C -0.227 4.227 5 C -0.055 4.055 6 C 0.508 3.492 7 O -0.581 6.581 8 N -0.712 5.712 9 C 0.154 3.846 10 H 0.055 0.945 11 C -0.105 4.105 12 C -0.115 4.115 13 C 0.173 3.827 14 H 0.050 0.950 15 N -0.741 5.741 16 C -0.232 4.232 17 H 0.077 0.923 18 C -0.083 4.083 19 N -0.973 5.973 20 Si 0.971 3.029 21 H -0.264 1.264 22 H -0.297 1.297 23 H -0.293 1.293 24 C -0.123 4.123 25 C -0.108 4.108 26 C 0.119 3.881 27 Cl -0.004 7.004 28 N -0.328 5.328 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.225 0.775 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.418 0.582 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.370 0.630 41 H 0.249 0.751 42 H 0.033 0.967 43 H 0.040 0.960 44 H 0.079 0.921 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.030 -4.541 -29.109 33.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.146 5.146 3 C -0.060 4.060 4 C -0.239 4.239 5 C -0.095 4.095 6 C 0.296 3.704 7 O -0.460 6.460 8 N -0.365 5.365 9 C 0.049 3.951 10 H 0.073 0.927 11 C -0.143 4.143 12 C -0.153 4.153 13 C 0.065 3.935 14 H 0.069 0.931 15 N -0.380 5.380 16 C -0.364 4.364 17 H 0.095 0.905 18 C -0.274 4.274 19 N -0.624 5.624 20 Si 0.801 3.199 21 H -0.188 1.188 22 H -0.225 1.225 23 H -0.220 1.220 24 C -0.164 4.164 25 C -0.148 4.148 26 C -0.071 4.071 27 Cl 0.024 6.976 28 N -0.154 5.154 29 H 0.116 0.884 30 H 0.105 0.895 31 H 0.139 0.861 32 H 0.241 0.759 33 H 0.161 0.839 34 H 0.136 0.864 35 H 0.256 0.744 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.201 0.799 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.098 0.902 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.291 -5.870 -28.456 33.811 hybrid contribution 0.988 0.717 1.336 1.810 sum -16.303 -5.153 -27.120 32.060 Atomic orbital electron populations 1.22338 0.70845 1.06192 1.05316 1.48597 1.07946 1.02533 1.55567 1.23012 0.89157 0.95193 0.98606 1.19542 0.95951 0.90785 1.17632 1.20008 0.94532 1.02209 0.92753 1.21270 0.79895 0.77437 0.91798 1.90723 1.60223 1.46822 1.48233 1.45922 1.29080 1.51121 1.10366 1.20737 0.93503 0.97991 0.82897 0.92675 1.21641 0.92818 1.03756 0.96078 1.21650 0.99861 0.98081 0.95757 1.20500 0.91167 0.97065 0.84792 0.93149 1.42716 1.70042 1.11737 1.13477 1.19675 1.29748 0.91008 0.96011 0.90527 1.25581 1.02320 1.00719 0.98800 1.69838 1.46564 1.30703 1.15301 0.85089 0.76850 0.79624 0.78342 1.18813 1.22458 1.22043 1.22027 0.98497 0.99717 0.96187 1.21732 0.98737 0.99409 0.94897 1.22748 0.89025 0.91712 1.03649 1.98374 1.34590 1.67715 1.96952 1.77241 1.00701 1.10466 1.27001 0.88392 0.89534 0.86125 0.75892 0.83852 0.86364 0.74448 0.89066 0.89597 0.91549 0.93377 0.79854 0.94204 0.94838 0.94154 0.90207 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 11.47 127.77 1.47 2.08 16 2 N -0.36 -6.02 4.01 -369.57 -1.48 -7.50 16 3 C 0.09 1.19 11.40 83.54 0.95 2.15 16 4 C -0.23 -4.14 4.60 -20.12 -0.09 -4.24 16 5 C -0.05 -0.68 6.04 29.10 0.18 -0.51 16 6 C 0.51 10.72 7.79 87.66 0.68 11.40 16 7 O -0.58 -18.88 15.70 -3.01 -0.05 -18.93 16 8 N -0.71 -12.31 5.08 -442.53 -2.25 -14.56 16 9 C 0.15 3.77 2.46 44.99 0.11 3.88 16 10 H 0.05 1.74 7.58 -2.39 -0.02 1.72 16 11 C -0.10 -2.26 5.39 30.59 0.16 -2.10 16 12 C -0.11 -3.59 5.39 30.59 0.16 -3.43 16 13 C 0.17 6.71 2.77 44.99 0.12 6.84 16 14 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 15 N -0.74 -37.95 5.12 -322.93 -1.65 -39.61 16 16 C -0.23 -13.02 9.93 84.03 0.83 -12.19 16 17 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 18 C -0.08 -4.82 5.50 84.86 0.47 -4.35 16 19 N -0.97 -60.88 13.06 21.65 0.28 -60.60 16 20 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 21 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 24 C -0.12 -4.58 5.50 30.59 0.17 -4.41 16 25 C -0.11 -3.04 5.49 30.59 0.17 -2.87 16 26 C 0.12 2.87 7.84 85.25 0.67 3.54 16 27 Cl 0.00 -0.09 29.16 -2.72 -0.08 -0.17 16 28 N -0.33 -8.14 12.58 -49.68 -0.62 -8.77 16 29 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.22 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.14 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.42 3.78 8.60 -92.71 -0.80 2.99 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.37 20.60 7.80 -92.70 -0.72 19.87 16 41 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -83.95 389.23 1.72 -82.22 By element: Atomic # 1 Polarization: 23.83 SS G_CDS: -0.51 Total: 23.32 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 6.05 Total: -4.22 kcal Atomic # 7 Polarization: -125.31 SS G_CDS: -5.72 Total: -131.04 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.05 Total: -18.93 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.08 Total: -0.17 kcal Total: -83.95 1.72 -82.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034734975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.400 kcal (2) G-P(sol) polarization free energy of solvation -83.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds