Wall clock time and date at job start Sat Apr 11 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 120.00138 * 2 1 4 4 H 1.48505 * 109.46839 * 274.97992 * 3 2 1 5 5 H 1.48498 * 109.46945 * 34.98107 * 3 2 1 6 6 H 1.48496 * 109.47121 * 154.98200 * 3 2 1 7 7 C 1.38811 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99847 * 157.65107 * 7 2 1 9 9 N 1.36938 * 120.00104 * 337.64989 * 7 2 1 10 10 C 1.47147 * 120.98288 * 332.67895 * 9 7 2 11 11 C 1.53296 * 108.38304 * 230.50977 * 10 9 7 12 12 O 1.42955 * 109.26651 * 307.72273 * 11 10 9 13 13 C 1.42955 * 114.17297 * 62.49420 * 12 11 10 14 14 H 1.09008 * 109.51025 * 57.45723 * 13 12 11 15 15 C 1.52998 * 109.51495 * 177.55140 * 13 12 11 16 16 N 1.46492 * 109.47588 * 299.90133 * 15 13 12 17 17 C 1.34780 * 120.00434 * 180.27045 * 16 15 13 18 18 O 1.21606 * 119.99503 * 359.72939 * 17 16 15 19 19 C 1.47453 * 120.00146 * 179.72615 * 17 16 15 20 20 C 1.38716 * 120.38081 * 4.52822 * 19 17 16 21 21 C 1.38901 * 120.65556 * 180.02562 * 20 19 17 22 22 C 1.36286 * 121.17646 * 0.02562 * 21 20 19 23 23 C 1.40556 * 120.12446 * 359.97438 * 22 21 20 24 24 C 1.40578 * 121.16640 * 179.97438 * 23 22 21 25 25 C 1.36133 * 119.65462 * 180.02562 * 24 23 22 26 26 C 1.39297 * 120.94970 * 0.02562 * 25 24 23 27 27 C 1.36251 * 120.93656 * 359.97438 * 26 25 24 28 28 C 1.40144 * 119.68673 * 359.72780 * 27 26 25 29 29 C 1.47154 * 120.98102 * 152.65032 * 9 7 2 30 30 H 0.96996 * 119.99386 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.68084 * 350.23002 * 10 9 7 32 32 H 1.08997 * 109.68462 * 110.75387 * 10 9 7 33 33 H 1.09006 * 109.51537 * 67.62114 * 11 10 9 34 34 H 1.09005 * 109.51463 * 187.76802 * 11 10 9 35 35 H 1.09008 * 109.47173 * 179.89867 * 15 13 12 36 36 H 1.09002 * 109.46924 * 59.90524 * 15 13 12 37 37 H 0.97006 * 119.99837 * 0.02562 * 16 15 13 38 38 H 1.08001 * 119.67225 * 0.02654 * 20 19 17 39 39 H 1.07997 * 119.41386 * 180.02562 * 21 20 19 40 40 H 1.07998 * 119.94431 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.17184 * 359.97438 * 24 23 22 42 42 H 1.08004 * 119.52635 * 179.97438 * 25 24 23 43 43 H 1.08004 * 119.53193 * 180.02562 * 26 25 24 44 44 H 1.08004 * 120.15550 * 180.02562 * 27 26 25 45 45 H 1.08998 * 109.68019 * 9.76791 * 29 9 7 46 46 H 1.09004 * 109.71380 * 249.23197 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1071 -1.3949 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4120 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0294 -1.2374 -0.3551 9 7 1.4027 -2.3433 0.4520 10 6 0.3231 -2.2827 1.4500 11 6 0.6552 -3.2622 2.5815 12 8 0.9335 -4.5492 2.0248 13 6 2.0693 -4.5786 1.1573 14 1 2.9489 -4.2274 1.6971 15 6 2.3053 -6.0104 0.6726 16 7 2.5510 -6.8817 1.8243 17 6 2.7912 -8.1947 1.6371 18 8 2.7990 -8.6569 0.5123 19 6 3.0444 -9.0705 2.7960 20 6 2.9452 -8.5722 4.0868 21 6 3.1830 -9.3920 5.1826 22 6 3.5196 -10.7030 5.0231 23 6 3.6317 -11.2507 3.7335 24 6 3.9780 -12.5998 3.5436 25 6 4.0784 -13.0981 2.2807 26 6 3.8433 -12.2898 1.1709 27 6 3.5057 -10.9781 1.3186 28 6 3.3870 -10.4324 2.6039 29 6 1.8098 -3.6664 -0.0471 30 1 -0.4849 0.8401 -0.0004 31 1 0.2493 -1.2714 1.8499 32 1 -0.6221 -2.5640 0.9860 33 1 1.5290 -2.9058 3.1270 34 1 -0.1941 -3.3353 3.2609 35 1 3.1705 -6.0317 0.0098 36 1 1.4256 -6.3609 0.1329 37 1 2.5443 -6.5130 2.7215 38 1 2.6804 -7.5367 4.2413 39 1 3.0998 -8.9833 6.1788 40 1 3.7006 -11.3223 5.8891 41 1 4.1643 -13.2374 4.3951 42 1 4.3451 -14.1348 2.1372 43 1 3.9289 -12.7091 0.1792 44 1 3.3257 -10.3630 0.4492 45 1 2.7203 -3.5714 -0.6387 46 1 1.0147 -4.0880 -0.6622 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035591610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:19 Heat of formation + Delta-G solvation = -3.609477 kcal Electronic energy + Delta-G solvation = -28505.959896 eV Core-core repulsion = 24554.316944 eV Total energy + Delta-G solvation = -3951.642952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95133 -39.32358 -38.41612 -36.66812 -35.01435 -34.33479 -32.90734 -31.65499 -30.89211 -30.49499 -29.44538 -27.53045 -25.72132 -24.16846 -23.24249 -23.08839 -22.82419 -21.70915 -20.72932 -19.69163 -17.90578 -17.67104 -16.91082 -16.80232 -16.18670 -15.96413 -15.81237 -15.15478 -15.00941 -14.75993 -14.52920 -14.38559 -13.91851 -13.69420 -13.68385 -13.50766 -13.21178 -13.09026 -12.92585 -12.76659 -12.40638 -12.28438 -11.64261 -11.56931 -11.55818 -11.22997 -11.21091 -10.85989 -10.78010 -10.46560 -10.35577 -10.13975 -10.02652 -9.74788 -9.57387 -9.14661 -9.07410 -8.88890 -8.55748 -8.12493 -6.80612 -5.90756 -3.31544 0.03012 0.76661 1.61012 2.54580 3.08867 3.11878 3.31060 3.39174 3.41698 3.94917 4.15514 4.37693 4.40463 4.48177 4.54355 4.71413 4.81516 4.87103 5.06151 5.11462 5.14314 5.22849 5.26293 5.41869 5.43814 5.50461 5.67105 5.74002 5.79500 5.82885 5.93567 5.95545 5.98943 6.06638 6.09431 6.21271 6.30346 6.32394 6.37113 6.42218 6.51303 6.59228 6.71063 6.81154 6.99001 7.39133 7.47423 7.68868 7.77183 8.17585 8.27909 9.05244 9.69407 10.27334 11.17727 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026327 B = 0.002096 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.305589 B =13358.208755 C =13886.836676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.006 3.994 3 Si 0.900 3.100 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.592 5.592 10 C 0.141 3.859 11 C 0.041 3.959 12 O -0.389 6.389 13 C 0.064 3.936 14 H 0.059 0.941 15 C 0.130 3.870 16 N -0.711 5.711 17 C 0.559 3.441 18 O -0.537 6.537 19 C -0.120 4.120 20 C -0.074 4.074 21 C -0.127 4.127 22 C -0.081 4.081 23 C -0.061 4.061 24 C -0.114 4.114 25 C -0.114 4.114 26 C -0.121 4.121 27 C -0.111 4.111 28 C -0.014 4.014 29 C 0.122 3.878 30 H 0.255 0.745 31 H 0.085 0.915 32 H 0.030 0.970 33 H 0.042 0.958 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.403 0.597 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.171 0.829 45 H 0.065 0.935 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.126 -22.427 10.971 25.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.390 4.390 8 H 0.086 0.914 9 N -0.316 5.316 10 C 0.015 3.985 11 C -0.037 4.037 12 O -0.309 6.309 13 C 0.004 3.996 14 H 0.077 0.923 15 C 0.006 3.994 16 N -0.361 5.361 17 C 0.347 3.653 18 O -0.417 6.417 19 C -0.123 4.123 20 C -0.093 4.093 21 C -0.145 4.145 22 C -0.099 4.099 23 C -0.061 4.061 24 C -0.132 4.132 25 C -0.132 4.132 26 C -0.139 4.139 27 C -0.128 4.128 28 C -0.015 4.015 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.239 0.761 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.188 0.812 45 H 0.083 0.917 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.892 -22.701 10.175 25.814 hybrid contribution 0.415 1.379 0.496 1.523 sum 7.307 -21.321 10.671 24.937 Atomic orbital electron populations 1.70113 1.05397 1.25813 1.52506 1.25034 0.95161 0.98649 1.00517 0.86330 0.79391 0.83617 0.77765 1.21309 1.21439 1.20317 1.19128 0.94687 0.85400 1.39826 0.91406 1.44059 1.41779 1.00548 1.45207 1.21357 0.90623 0.98282 0.88242 1.23298 0.99451 0.84228 0.96727 1.87777 1.48231 1.31256 1.63626 1.22827 0.89145 0.93687 0.93918 0.92276 1.21488 1.02089 0.87905 0.87888 1.45870 1.71137 1.07871 1.11260 1.18088 0.76814 0.82003 0.88444 1.90552 1.52416 1.73842 1.24928 1.19955 1.05049 0.93868 0.93382 1.21416 0.96237 1.00032 0.91595 1.20771 1.00730 0.94008 0.98982 1.21217 0.97107 0.95535 0.96047 1.18089 1.00956 0.94173 0.92847 1.20969 1.00740 0.93855 0.97659 1.20930 0.99567 0.99946 0.92762 1.21052 0.99717 0.94294 0.98874 1.22291 0.96004 0.95987 0.98511 1.17891 0.98209 0.91756 0.93654 1.21445 0.99088 0.87156 0.92862 0.93492 0.89657 0.95182 0.94004 0.89963 0.89868 0.90398 0.76092 0.85192 0.85170 0.85229 0.85582 0.86067 0.85884 0.81190 0.91685 0.95185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 11.60 55.49 0.64 -24.91 16 2 C 0.01 0.17 4.78 -17.43 -0.08 0.08 16 3 Si 0.90 21.10 29.61 -169.99 -5.03 16.06 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.26 -7.00 9.59 -15.06 -0.14 -7.15 16 8 H 0.07 1.78 7.92 -52.49 -0.42 1.36 16 9 N -0.59 -14.51 3.04 -171.83 -0.52 -15.03 16 10 C 0.14 3.25 5.48 -3.54 -0.02 3.24 16 11 C 0.04 0.75 6.98 37.31 0.26 1.01 16 12 O -0.39 -6.96 10.14 -35.23 -0.36 -7.32 16 13 C 0.06 1.08 2.86 -26.58 -0.08 1.00 16 14 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 15 C 0.13 1.90 5.37 -4.05 -0.02 1.88 16 16 N -0.71 -9.34 5.40 -61.38 -0.33 -9.67 16 17 C 0.56 7.89 7.73 -12.51 -0.10 7.79 16 18 O -0.54 -8.88 13.38 5.27 0.07 -8.81 16 19 C -0.12 -1.47 5.90 -104.63 -0.62 -2.09 16 20 C -0.07 -0.72 9.51 -39.16 -0.37 -1.09 16 21 C -0.13 -1.04 9.92 -40.04 -0.40 -1.43 16 22 C -0.08 -0.67 9.75 -39.41 -0.38 -1.06 16 23 C -0.06 -0.63 5.74 -106.86 -0.61 -1.24 16 24 C -0.11 -1.00 9.77 -39.46 -0.39 -1.38 16 25 C -0.11 -0.99 9.95 -39.94 -0.40 -1.39 16 26 C -0.12 -1.23 9.95 -39.90 -0.40 -1.63 16 27 C -0.11 -1.39 9.21 -39.58 -0.36 -1.76 16 28 C -0.01 -0.18 5.76 -106.56 -0.61 -0.79 16 29 C 0.12 2.48 6.02 -3.53 -0.02 2.46 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.09 2.15 6.41 -51.93 -0.33 1.82 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.40 4.59 6.40 -40.82 -0.26 4.33 16 38 H 0.13 1.03 6.40 -52.49 -0.34 0.69 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 44 H 0.17 2.40 4.86 -52.62 -0.26 2.15 16 45 H 0.06 1.26 7.96 -51.93 -0.41 0.85 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 374.32 15.07 5.64 5.64 Total: -1.00 -31.92 374.32 -10.86 -42.78 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.22 Total: 4.82 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -4.75 Total: -3.56 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.21 Total: -49.61 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.29 Total: -16.13 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.92 -10.86 -42.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035591610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.170 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds