Wall clock time and date at job start Sat Apr 11 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00101 * 2 1 4 4 H 1.48499 * 109.47150 * 239.72750 * 3 2 1 5 5 H 1.48497 * 109.46851 * 359.72339 * 3 2 1 6 6 H 1.48500 * 109.47203 * 119.72359 * 3 2 1 7 7 C 1.38812 * 120.00080 * 179.72648 * 2 1 3 8 8 H 1.08003 * 119.99997 * 176.09097 * 7 2 1 9 9 N 1.36939 * 120.00044 * 356.08456 * 7 2 1 10 10 C 1.47149 * 120.97869 * 34.95833 * 9 7 2 11 11 C 1.53301 * 108.38515 * 129.44065 * 10 9 7 12 12 O 1.42965 * 109.22380 * 52.29885 * 11 10 9 13 13 C 1.42963 * 114.16601 * 297.42487 * 12 11 10 14 14 H 1.09006 * 109.51164 * 302.65277 * 13 12 11 15 15 C 1.53002 * 109.51343 * 182.55373 * 13 12 11 16 16 N 1.46507 * 109.47075 * 64.99461 * 15 13 12 17 17 C 1.34774 * 119.99793 * 179.97438 * 16 15 13 18 18 O 1.21599 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.47454 * 119.99567 * 179.97438 * 17 16 15 20 20 C 1.38714 * 120.38148 * 6.29898 * 19 17 16 21 21 C 1.38909 * 120.65212 * 179.97438 * 20 19 17 22 22 C 1.36283 * 121.17803 * 0.02562 * 21 20 19 23 23 C 1.40559 * 120.12595 * 0.02562 * 22 21 20 24 24 C 1.40574 * 121.17114 * 179.97438 * 23 22 21 25 25 C 1.36149 * 119.65453 * 179.15780 * 24 23 22 26 26 C 1.39301 * 120.94471 * 0.80854 * 25 24 23 27 27 C 1.36252 * 120.93558 * 359.47232 * 26 25 24 28 28 C 1.40144 * 119.68829 * 359.97438 * 27 26 25 29 29 C 1.47153 * 120.98126 * 214.67261 * 9 7 2 30 30 H 0.96997 * 120.00128 * 0.27452 * 1 2 3 31 31 H 1.08999 * 109.68158 * 249.15776 * 10 9 7 32 32 H 1.08995 * 109.68456 * 9.67844 * 10 9 7 33 33 H 1.08994 * 109.51292 * 172.22508 * 11 10 9 34 34 H 1.09001 * 109.50892 * 292.32729 * 11 10 9 35 35 H 1.08995 * 109.47282 * 184.99339 * 15 13 12 36 36 H 1.08996 * 109.46728 * 304.99688 * 15 13 12 37 37 H 0.97003 * 119.99930 * 0.02562 * 16 15 13 38 38 H 1.08004 * 119.67293 * 0.02562 * 20 19 17 39 39 H 1.07996 * 119.41284 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.94227 * 179.97438 * 22 21 20 41 41 H 1.08003 * 120.17340 * 359.96033 * 24 23 22 42 42 H 1.07993 * 119.52470 * 180.25886 * 25 24 23 43 43 H 1.07998 * 119.53060 * 179.45201 * 26 25 24 44 44 H 1.07998 * 120.15720 * 179.97438 * 27 26 25 45 45 H 1.08998 * 109.68559 * 350.28462 * 29 9 7 46 46 H 1.09002 * 109.68119 * 110.84091 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1090 1.6935 -1.2091 5 1 1.2852 2.7464 -0.0068 6 1 3.0989 1.6993 1.2159 7 6 2.0103 -1.2021 0.0057 8 1 3.0884 -1.2035 -0.0580 9 7 1.3280 -2.3863 0.0924 10 6 0.0135 -2.5516 -0.5479 11 6 0.0425 -3.8339 -1.3876 12 8 0.4934 -4.9194 -0.5738 13 6 1.8257 -4.7656 -0.0787 14 1 2.5126 -4.6378 -0.9154 15 6 2.2204 -6.0088 0.7211 16 7 2.2708 -7.1687 -0.1725 17 6 2.5997 -8.3813 0.3153 18 8 2.8540 -8.5127 1.4971 19 6 2.6499 -9.5488 -0.5840 20 6 2.4887 -9.3878 -1.9523 21 6 2.5355 -10.4836 -2.8047 22 6 2.7395 -11.7426 -2.3247 23 6 2.9069 -11.9531 -0.9451 24 6 3.1181 -13.2424 -0.4261 25 6 3.2936 -13.4087 0.9138 26 6 3.2504 -12.3206 1.7824 27 6 3.0419 -11.0582 1.3140 28 6 2.8686 -10.8478 -0.0607 29 6 1.8905 -3.5329 0.8233 30 1 -0.4850 0.8400 -0.0040 31 1 -0.7597 -2.6308 0.2162 32 1 -0.1920 -1.6958 -1.1908 33 1 -0.9595 -4.0488 -1.7587 34 1 0.7222 -3.7024 -2.2296 35 1 3.2006 -5.8547 1.1720 36 1 1.4837 -6.1856 1.5047 37 1 2.0683 -7.0638 -1.1153 38 1 2.3260 -8.4005 -2.3590 39 1 2.4070 -10.3353 -3.8667 40 1 2.7719 -12.5804 -3.0055 41 1 3.1539 -14.0949 -1.0882 42 1 3.4599 -14.3996 1.3097 43 1 3.3837 -12.4799 2.8422 44 1 3.0104 -10.2237 1.9988 45 1 2.9278 -3.3269 1.0874 46 1 1.3095 -3.7125 1.7278 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035591611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:21 Heat of formation + Delta-G solvation = -4.036615 kcal Electronic energy + Delta-G solvation = -28491.553896 eV Core-core repulsion = 24539.892422 eV Total energy + Delta-G solvation = -3951.661474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94869 -39.31228 -38.38180 -36.66551 -34.99718 -34.31625 -32.90532 -31.64677 -30.84930 -30.48928 -29.43143 -27.49173 -25.70157 -24.15596 -23.24268 -23.08368 -22.79898 -21.66992 -20.72862 -19.63770 -17.89768 -17.66790 -16.92705 -16.80183 -16.11973 -15.98319 -15.83740 -15.12160 -14.98068 -14.80069 -14.49878 -14.38290 -13.84801 -13.69496 -13.66435 -13.44278 -13.18059 -13.09338 -12.90707 -12.70987 -12.39047 -12.28502 -11.64151 -11.57944 -11.55318 -11.22002 -11.03536 -10.95291 -10.70718 -10.41930 -10.25750 -10.13878 -10.12929 -9.76084 -9.57320 -9.08685 -9.04532 -8.88690 -8.56108 -8.12281 -6.67093 -5.88577 -3.42688 0.03308 0.76791 1.61254 2.54714 3.07004 3.14436 3.32101 3.37908 3.38625 3.95147 4.20351 4.37293 4.39325 4.48139 4.54287 4.71463 4.81605 4.87217 5.07505 5.11588 5.15287 5.22925 5.30983 5.44187 5.46342 5.53139 5.67354 5.78053 5.81155 5.83528 5.93810 5.96448 6.01743 6.07433 6.13832 6.27258 6.33131 6.36677 6.38079 6.49043 6.51987 6.59347 6.73668 6.81267 7.13879 7.47137 7.58378 7.67476 7.85127 8.17570 8.37658 9.10816 9.68673 10.29543 11.17879 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026421 B = 0.002081 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.528557 B =13453.115460 C =13949.287123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.011 3.989 3 Si 0.907 3.093 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.595 5.595 10 C 0.137 3.863 11 C 0.037 3.963 12 O -0.391 6.391 13 C 0.064 3.936 14 H 0.057 0.943 15 C 0.130 3.870 16 N -0.712 5.712 17 C 0.559 3.441 18 O -0.537 6.537 19 C -0.119 4.119 20 C -0.074 4.074 21 C -0.127 4.127 22 C -0.081 4.081 23 C -0.060 4.060 24 C -0.114 4.114 25 C -0.114 4.114 26 C -0.121 4.121 27 C -0.110 4.110 28 C -0.014 4.014 29 C 0.122 3.878 30 H 0.257 0.743 31 H 0.026 0.974 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.403 0.597 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.171 0.829 45 H 0.064 0.936 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.848 -24.503 -4.989 25.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.736 3.264 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.012 3.988 11 C -0.041 4.041 12 O -0.310 6.310 13 C 0.004 3.996 14 H 0.075 0.925 15 C 0.006 3.994 16 N -0.362 5.362 17 C 0.347 3.653 18 O -0.417 6.417 19 C -0.122 4.122 20 C -0.093 4.093 21 C -0.145 4.145 22 C -0.099 4.099 23 C -0.060 4.060 24 C -0.132 4.132 25 C -0.132 4.132 26 C -0.139 4.139 27 C -0.127 4.127 28 C -0.015 4.015 29 C -0.005 4.005 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.238 0.762 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.188 0.812 45 H 0.082 0.918 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.785 -24.519 -4.091 25.315 hybrid contribution 0.380 1.167 -0.646 1.387 sum 5.165 -23.352 -4.738 24.381 Atomic orbital electron populations 1.69886 1.05407 1.25842 1.53561 1.25341 0.95598 0.98409 0.99485 0.86314 0.78913 0.82961 0.78212 1.20848 1.21483 1.20708 1.19091 0.90691 0.82875 1.46243 0.91676 1.43957 1.19472 1.09542 1.58921 1.21576 0.87078 0.94606 0.95546 1.23391 0.98054 0.89350 0.93270 1.87791 1.29862 1.44225 1.69124 1.22729 0.85056 0.94719 0.97076 0.92478 1.21481 1.02126 0.82994 0.92783 1.45903 1.69264 1.07812 1.13223 1.18083 0.77027 0.82783 0.87451 1.90555 1.50269 1.84237 1.16649 1.19958 1.05407 0.93144 0.93708 1.21404 0.96116 0.99536 0.92262 1.20769 1.01150 0.92364 1.00194 1.21215 0.97055 0.97606 0.94038 1.18088 1.01308 0.93319 0.93326 1.20974 1.00902 0.95546 0.95806 1.20934 0.99507 0.99089 0.93662 1.21051 1.00096 0.92745 1.00041 1.22274 0.95914 0.99204 0.95356 1.17889 0.98518 0.91174 0.93938 1.21377 0.98558 0.87317 0.93269 0.93271 0.95574 0.87912 0.90137 0.94244 0.89850 0.90359 0.76170 0.85254 0.85170 0.85224 0.85576 0.86062 0.85880 0.81237 0.91770 0.95202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 10.69 55.49 0.59 -24.90 16 2 C 0.01 0.30 5.32 -17.43 -0.09 0.20 16 3 Si 0.91 21.15 29.56 -169.99 -5.02 16.12 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.95 9.60 -15.06 -0.14 -7.10 16 8 H 0.07 1.70 7.83 -52.48 -0.41 1.29 16 9 N -0.59 -14.69 3.05 -172.08 -0.53 -15.22 16 10 C 0.14 3.24 5.39 -3.53 -0.02 3.22 16 11 C 0.04 0.70 6.99 37.31 0.26 0.96 16 12 O -0.39 -7.20 10.33 -35.23 -0.36 -7.56 16 13 C 0.06 1.10 2.80 -26.79 -0.07 1.02 16 14 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 15 C 0.13 1.92 5.35 -4.04 -0.02 1.90 16 16 N -0.71 -9.43 5.45 -61.37 -0.33 -9.77 16 17 C 0.56 7.94 7.72 -12.51 -0.10 7.84 16 18 O -0.54 -8.92 13.39 5.28 0.07 -8.85 16 19 C -0.12 -1.48 5.90 -104.63 -0.62 -2.09 16 20 C -0.07 -0.72 9.51 -39.16 -0.37 -1.10 16 21 C -0.13 -1.04 9.92 -40.04 -0.40 -1.44 16 22 C -0.08 -0.68 9.75 -39.41 -0.38 -1.06 16 23 C -0.06 -0.63 5.74 -106.86 -0.61 -1.24 16 24 C -0.11 -1.00 9.77 -39.45 -0.39 -1.39 16 25 C -0.11 -1.00 9.95 -39.94 -0.40 -1.39 16 26 C -0.12 -1.24 9.95 -39.90 -0.40 -1.64 16 27 C -0.11 -1.40 9.21 -39.58 -0.36 -1.76 16 28 C -0.01 -0.18 5.76 -106.56 -0.61 -0.80 16 29 C 0.12 2.51 6.00 -3.75 -0.02 2.48 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 2.66 6.13 -51.93 -0.32 2.35 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.40 4.62 6.54 -40.82 -0.27 4.35 16 38 H 0.13 1.02 6.42 -52.48 -0.34 0.68 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.17 2.41 4.87 -52.59 -0.26 2.16 16 45 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -31.61 373.77 -10.92 -42.53 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.21 Total: 5.39 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -4.75 Total: -3.37 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.27 Total: -49.89 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.29 Total: -16.42 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.61 -10.92 -42.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035591611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.488 kcal (2) G-P(sol) polarization free energy of solvation -31.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds