Wall clock time and date at job start Sat Apr 11 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48495 * 109.47511 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47028 * 300.00465 * 3 2 1 6 6 H 1.48498 * 109.46939 * 60.00355 * 3 2 1 7 7 C 1.38816 * 120.00478 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99836 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.47670 * 134.45980 * 180.02562 * 9 7 2 11 11 C 1.53511 * 85.97859 * 204.27655 * 10 9 7 12 12 C 1.47669 * 134.45599 * 359.95116 * 9 7 2 13 13 C 1.52668 * 113.57396 * 91.01262 * 11 10 9 14 14 C 1.53335 * 109.11222 * 73.81225 * 13 11 10 15 15 N 1.46881 * 108.76347 * 52.39797 * 14 13 11 16 16 C 1.34781 * 120.46323 * 124.47470 * 15 14 13 17 17 O 1.21569 * 119.99835 * 3.80049 * 16 15 14 18 18 C 1.47693 * 120.00148 * 183.79450 * 16 15 14 19 19 C 1.40110 * 120.02330 * 128.38991 * 18 16 15 20 20 C 1.36431 * 120.68471 * 180.02562 * 19 18 16 21 21 C 1.39159 * 120.27825 * 0.02562 * 20 19 18 22 22 O 1.34744 * 133.26011 * 179.97438 * 21 20 19 23 23 C 1.34435 * 110.96070 * 179.97438 * 22 21 20 24 24 C 1.33962 * 110.20138 * 0.24329 * 23 22 21 25 25 C 1.40678 * 119.54066 * 359.97438 * 21 20 19 26 26 C 1.39092 * 120.20332 * 359.97438 * 25 21 20 27 27 C 1.46883 * 119.07354 * 304.75428 * 15 14 13 28 28 C 1.52674 * 113.56220 * 222.23066 * 11 10 9 29 29 H 0.96995 * 120.00451 * 359.97438 * 1 2 3 30 30 H 1.08997 * 113.79522 * 90.00424 * 10 9 7 31 31 H 1.09005 * 113.78735 * 318.53504 * 10 9 7 32 32 H 1.09005 * 113.79238 * 41.44991 * 12 9 7 33 33 H 1.09001 * 113.79134 * 269.98773 * 12 9 7 34 34 H 1.09002 * 109.53546 * 313.91820 * 13 11 10 35 35 H 1.09004 * 109.59319 * 193.73277 * 13 11 10 36 36 H 1.09004 * 109.58442 * 292.62266 * 14 13 11 37 37 H 1.08991 * 109.59296 * 172.19008 * 14 13 11 38 38 H 1.07991 * 119.65768 * 0.02562 * 19 18 16 39 39 H 1.07993 * 119.86289 * 179.97438 * 20 19 18 40 40 H 1.08001 * 124.90267 * 179.97438 * 23 22 21 41 41 H 1.07997 * 126.92954 * 179.75868 * 24 23 22 42 42 H 1.07997 * 120.32669 * 179.97438 * 26 25 21 43 43 H 1.09002 * 109.59030 * 175.04089 * 27 15 14 44 44 H 1.09002 * 109.58361 * 295.46991 * 27 15 14 45 45 H 1.09004 * 109.52609 * 46.07589 * 28 11 10 46 46 H 1.08997 * 109.53639 * 166.22216 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 1.7215 -3.8107 -0.0005 11 6 0.3478 -4.0811 -0.6301 12 6 -0.1042 -2.7568 0.0008 13 6 0.3607 -4.0586 -2.1566 14 6 1.0372 -5.3346 -2.6717 15 7 0.3919 -6.4968 -2.0470 16 6 -0.1306 -7.4791 -2.8077 17 8 -0.0091 -7.4416 -4.0167 18 6 -0.8508 -8.6013 -2.1724 19 6 -2.1327 -8.9522 -2.6157 20 6 -2.8103 -9.9860 -2.0383 21 6 -2.2346 -10.7077 -0.9970 22 8 -2.6541 -11.7502 -0.2534 23 6 -1.7226 -12.1025 0.6496 24 6 -0.6514 -11.3050 0.5445 25 6 -0.9479 -10.3644 -0.5435 26 6 -0.2563 -9.3112 -1.1326 27 6 0.3184 -6.5705 -0.5819 28 6 -0.3577 -5.3058 -0.0529 29 1 -0.4850 0.8400 0.0004 30 1 1.8393 -4.2344 0.9968 31 1 2.5594 -4.0340 -0.6610 32 1 -0.7174 -2.1422 -0.6583 33 1 -0.5288 -2.8674 0.9986 34 1 0.9150 -3.1866 -2.5037 35 1 -0.6623 -4.0125 -2.5301 36 1 2.0950 -5.3189 -2.4089 37 1 0.9284 -5.3943 -3.7546 38 1 -2.5892 -8.3987 -3.4229 39 1 -3.7979 -10.2449 -2.3902 40 1 -1.8250 -12.9092 1.3604 41 1 0.2494 -11.3467 1.1388 42 1 0.7314 -9.0456 -0.7858 43 1 -0.2638 -7.4441 -0.2887 44 1 1.3244 -6.6437 -0.1688 45 1 -0.2933 -5.2843 1.0350 46 1 -1.4047 -5.3000 -0.3561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035709292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:24 Heat of formation + Delta-G solvation = 62.022063 kcal Electronic energy + Delta-G solvation = -29357.823198 eV Core-core repulsion = 25409.026243 eV Total energy + Delta-G solvation = -3948.796955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.78385 -40.54207 -38.95808 -37.54637 -35.78143 -33.20856 -32.55660 -31.71193 -30.70266 -29.93961 -29.71124 -26.90632 -25.14083 -24.63622 -23.50692 -23.31578 -22.45121 -21.68481 -21.23378 -19.82895 -18.14045 -17.81333 -17.26445 -16.78145 -16.67253 -16.44055 -15.90834 -15.24239 -14.85943 -14.68263 -14.58589 -14.45264 -14.04666 -13.77251 -13.62847 -13.46968 -13.09981 -13.05277 -12.86626 -12.67164 -12.36017 -12.16164 -12.07555 -11.69429 -11.34277 -11.10392 -11.03336 -10.86852 -10.83339 -10.58732 -10.32847 -10.16789 -9.93784 -9.70711 -9.53527 -9.34534 -8.90459 -8.78101 -8.58443 -8.43673 -6.84708 -5.75183 -3.06851 0.55559 0.76406 2.02790 2.42652 2.60828 2.98688 3.39035 3.41490 3.44564 3.46952 4.05845 4.26839 4.39188 4.46686 4.67250 4.83839 4.94838 4.97583 5.01053 5.05640 5.20095 5.24756 5.31151 5.34498 5.48933 5.50528 5.55133 5.69862 5.76030 5.82130 5.87041 5.92884 5.95891 6.00775 6.01451 6.16847 6.21570 6.27954 6.32320 6.43987 6.61758 6.65038 6.77220 6.81571 6.87347 7.25182 7.38819 7.43288 7.60256 8.00463 8.13416 9.06743 9.72883 10.63143 11.41805 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022850 B = 0.002450 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.092431 B =11424.998906 C =11910.665106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.109 4.109 12 C 0.173 3.827 13 C -0.096 4.096 14 C 0.113 3.887 15 N -0.595 5.595 16 C 0.561 3.439 17 O -0.540 6.540 18 C -0.134 4.134 19 C -0.046 4.046 20 C -0.108 4.108 21 C 0.066 3.934 22 O -0.194 6.194 23 C 0.005 3.995 24 C -0.204 4.204 25 C -0.139 4.139 26 C -0.037 4.037 27 C 0.099 3.901 28 C -0.118 4.118 29 H 0.252 0.748 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.024 0.976 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.209 0.791 41 H 0.161 0.839 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.338 -24.614 0.431 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.000 4.000 11 C -0.110 4.110 12 C 0.048 3.952 13 C -0.134 4.134 14 C -0.008 4.008 15 N -0.327 5.327 16 C 0.349 3.651 17 O -0.418 6.418 18 C -0.137 4.137 19 C -0.065 4.065 20 C -0.127 4.127 21 C 0.018 3.982 22 O -0.095 6.095 23 C -0.060 4.060 24 C -0.223 4.223 25 C -0.140 4.140 26 C -0.056 4.056 27 C -0.023 4.023 28 C -0.157 4.157 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.042 0.958 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.225 0.775 41 H 0.178 0.822 42 H 0.155 0.845 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.093 0.907 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.458 -24.326 -0.252 24.732 hybrid contribution 0.649 0.997 0.551 1.311 sum -3.809 -23.328 0.300 23.639 Atomic orbital electron populations 1.69821 1.04966 1.25118 1.56897 1.24760 0.95635 0.97425 1.02673 0.86090 0.78748 0.83953 0.77242 1.20529 1.21741 1.21839 1.19053 0.90226 0.82089 1.43441 0.90378 1.45967 1.02359 0.99169 1.85993 1.22590 0.94392 0.86636 0.96355 1.22394 0.97950 0.95552 0.95119 1.22233 0.88076 0.88371 0.96522 1.21488 1.00959 0.96775 0.94184 1.21748 0.96368 0.84007 0.98704 1.48058 1.56668 1.20928 1.07091 1.18180 0.78496 0.81940 0.86497 1.90784 1.59565 1.77697 1.13777 1.19774 0.96487 0.98814 0.98643 1.20622 0.92651 0.95081 0.98156 1.19580 1.01440 0.96197 0.95455 1.19827 0.93714 0.89552 0.95071 1.84000 1.42221 1.42303 1.41022 1.23979 0.87589 1.00746 0.93651 1.22551 1.01276 0.97662 1.00768 1.19846 0.95400 0.99298 0.99461 1.20698 0.99479 0.92527 0.92857 1.21992 1.01563 0.99686 0.79108 1.21741 0.99681 0.93816 1.00473 0.93766 0.95196 0.94162 0.90993 0.95788 0.89356 0.92078 0.91235 0.89240 0.83942 0.84405 0.77450 0.82158 0.84547 0.89544 0.91030 0.90667 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.13 11.39 55.49 0.63 -26.50 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 7 C -0.22 -6.10 10.70 -15.06 -0.16 -6.26 16 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.61 -15.15 3.53 -179.74 -0.63 -15.78 16 10 C 0.13 2.45 7.72 -3.14 -0.02 2.42 16 11 C -0.11 -1.90 0.77 -154.42 -0.12 -2.02 16 12 C 0.17 3.95 6.64 -3.15 -0.02 3.93 16 13 C -0.10 -1.62 5.22 -26.73 -0.14 -1.76 16 14 C 0.11 1.67 6.29 -3.66 -0.02 1.64 16 15 N -0.60 -8.10 2.95 -174.13 -0.51 -8.61 16 16 C 0.56 8.05 7.21 -12.40 -0.09 7.96 16 17 O -0.54 -9.47 16.45 5.30 0.09 -9.39 16 18 C -0.13 -1.59 4.98 -104.96 -0.52 -2.12 16 19 C -0.05 -0.49 9.65 -39.53 -0.38 -0.87 16 20 C -0.11 -1.03 9.99 -39.89 -0.40 -1.43 16 21 C 0.07 0.68 7.42 -38.32 -0.28 0.40 16 22 O -0.19 -1.82 10.57 4.13 0.04 -1.78 16 23 C 0.00 0.03 11.95 29.23 0.35 0.38 16 24 C -0.20 -1.54 11.15 -37.60 -0.42 -1.95 16 25 C -0.14 -1.40 6.39 -105.18 -0.67 -2.07 16 26 C -0.04 -0.38 7.40 -38.89 -0.29 -0.67 16 27 C 0.10 1.17 5.30 -3.91 -0.02 1.15 16 28 C -0.12 -1.64 5.24 -26.97 -0.14 -1.78 16 29 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.03 0.56 8.07 -51.93 -0.42 0.15 16 31 H 0.04 0.75 7.41 -51.93 -0.38 0.37 16 32 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 33 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.09 1.71 8.01 -51.93 -0.42 1.29 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 37 H 0.09 1.37 6.99 -51.93 -0.36 1.01 16 38 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.21 0.46 8.06 -52.49 -0.42 0.03 16 41 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.14 1.22 7.15 -52.49 -0.38 0.85 16 43 H 0.09 0.90 4.50 -51.93 -0.23 0.66 16 44 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -33.76 370.98 -9.57 -43.32 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.29 Total: -0.55 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -3.45 Total: -3.40 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.52 Total: -50.89 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.13 Total: -11.16 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.76 -9.57 -43.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035709292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.344 kcal (2) G-P(sol) polarization free energy of solvation -33.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds