Wall clock time and date at job start Sat Apr 11 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99912 * 2 1 4 4 H 1.48495 * 109.47511 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47028 * 300.00465 * 3 2 1 6 6 H 1.48498 * 109.46939 * 60.00355 * 3 2 1 7 7 C 1.38816 * 120.00478 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99836 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.47670 * 134.45980 * 180.02562 * 9 7 2 11 11 C 1.53511 * 85.97859 * 204.27655 * 10 9 7 12 12 C 1.47669 * 134.45599 * 359.95116 * 9 7 2 13 13 C 1.52668 * 113.57396 * 91.01262 * 11 10 9 14 14 C 1.53335 * 109.11222 * 73.81225 * 13 11 10 15 15 N 1.46881 * 108.76347 * 52.39797 * 14 13 11 16 16 C 1.34781 * 120.46323 * 124.47470 * 15 14 13 17 17 O 1.21569 * 119.99835 * 3.80049 * 16 15 14 18 18 C 1.47693 * 120.00148 * 183.79450 * 16 15 14 19 19 C 1.40110 * 120.02330 * 128.38991 * 18 16 15 20 20 C 1.36431 * 120.68471 * 180.02562 * 19 18 16 21 21 C 1.39159 * 120.27825 * 0.02562 * 20 19 18 22 22 O 1.34744 * 133.26011 * 179.97438 * 21 20 19 23 23 C 1.34435 * 110.96070 * 179.97438 * 22 21 20 24 24 C 1.33962 * 110.20138 * 0.24329 * 23 22 21 25 25 C 1.40678 * 119.54066 * 359.97438 * 21 20 19 26 26 C 1.39092 * 120.20332 * 359.97438 * 25 21 20 27 27 C 1.46883 * 119.07354 * 304.75428 * 15 14 13 28 28 C 1.52674 * 113.56220 * 222.23066 * 11 10 9 29 29 H 0.96995 * 120.00451 * 359.97438 * 1 2 3 30 30 H 1.08997 * 113.79522 * 90.00424 * 10 9 7 31 31 H 1.09005 * 113.78735 * 318.53504 * 10 9 7 32 32 H 1.09005 * 113.79238 * 41.44991 * 12 9 7 33 33 H 1.09001 * 113.79134 * 269.98773 * 12 9 7 34 34 H 1.09002 * 109.53546 * 313.91820 * 13 11 10 35 35 H 1.09004 * 109.59319 * 193.73277 * 13 11 10 36 36 H 1.09004 * 109.58442 * 292.62266 * 14 13 11 37 37 H 1.08991 * 109.59296 * 172.19008 * 14 13 11 38 38 H 1.07991 * 119.65768 * 0.02562 * 19 18 16 39 39 H 1.07993 * 119.86289 * 179.97438 * 20 19 18 40 40 H 1.08001 * 124.90267 * 179.97438 * 23 22 21 41 41 H 1.07997 * 126.92954 * 179.75868 * 24 23 22 42 42 H 1.07997 * 120.32669 * 179.97438 * 26 25 21 43 43 H 1.09002 * 109.59030 * 175.04089 * 27 15 14 44 44 H 1.09002 * 109.58361 * 295.46991 * 27 15 14 45 45 H 1.09004 * 109.52609 * 46.07589 * 28 11 10 46 46 H 1.08997 * 109.53639 * 166.22216 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 7 1.3258 -2.3880 -0.0005 10 6 1.7215 -3.8107 -0.0005 11 6 0.3478 -4.0811 -0.6301 12 6 -0.1042 -2.7568 0.0008 13 6 0.3607 -4.0586 -2.1566 14 6 1.0372 -5.3346 -2.6717 15 7 0.3919 -6.4968 -2.0470 16 6 -0.1306 -7.4791 -2.8077 17 8 -0.0091 -7.4416 -4.0167 18 6 -0.8508 -8.6013 -2.1724 19 6 -2.1327 -8.9522 -2.6157 20 6 -2.8103 -9.9860 -2.0383 21 6 -2.2346 -10.7077 -0.9970 22 8 -2.6541 -11.7502 -0.2534 23 6 -1.7226 -12.1025 0.6496 24 6 -0.6514 -11.3050 0.5445 25 6 -0.9479 -10.3644 -0.5435 26 6 -0.2563 -9.3112 -1.1326 27 6 0.3184 -6.5705 -0.5819 28 6 -0.3577 -5.3058 -0.0529 29 1 -0.4850 0.8400 0.0004 30 1 1.8393 -4.2344 0.9968 31 1 2.5594 -4.0340 -0.6610 32 1 -0.7174 -2.1422 -0.6583 33 1 -0.5288 -2.8674 0.9986 34 1 0.9150 -3.1866 -2.5037 35 1 -0.6623 -4.0125 -2.5301 36 1 2.0950 -5.3189 -2.4089 37 1 0.9284 -5.3943 -3.7546 38 1 -2.5892 -8.3987 -3.4229 39 1 -3.7979 -10.2449 -2.3902 40 1 -1.8250 -12.9092 1.3604 41 1 0.2494 -11.3467 1.1388 42 1 0.7314 -9.0456 -0.7858 43 1 -0.2638 -7.4441 -0.2887 44 1 1.3244 -6.6437 -0.1688 45 1 -0.2933 -5.2843 1.0350 46 1 -1.4047 -5.3000 -0.3561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035709292.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:23 Heat of formation + Delta-G solvation = 42.441012 kcal Electronic energy + Delta-G solvation = -29358.672296 eV Core-core repulsion = 25409.026243 eV Total energy + Delta-G solvation = -3949.646053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.42490 -41.72960 -40.32824 -38.43414 -37.13247 -34.43827 -33.83117 -32.84696 -32.09291 -31.08322 -30.35772 -28.67365 -26.76550 -25.82961 -24.72108 -24.34847 -23.44009 -22.78294 -22.28961 -20.96792 -19.25382 -18.69524 -18.58876 -18.16068 -17.73803 -17.13751 -16.99948 -16.82279 -16.29887 -16.09540 -15.61597 -15.49155 -15.32263 -15.08298 -14.85389 -14.29841 -14.11123 -14.07346 -13.90151 -13.71761 -13.61804 -13.58796 -13.20778 -13.00528 -12.91325 -12.84366 -12.63490 -12.15627 -12.13902 -12.02790 -11.65356 -11.56382 -11.32901 -11.18189 -11.04955 -10.85753 -10.80619 -9.76698 -9.56303 -9.22177 -8.86074 -7.87965 -5.19770 -0.15813 0.00094 1.44789 1.45365 1.45698 1.55380 1.56635 1.83218 1.95634 2.48423 2.61140 3.30464 3.33017 3.43424 3.54898 3.62324 3.68507 3.93490 3.96810 4.04125 4.14614 4.20617 4.28820 4.32229 4.41422 4.43568 4.59740 4.66205 4.67469 4.75858 4.79885 4.86915 4.89988 4.93459 5.03370 5.07159 5.14271 5.15041 5.19688 5.25423 5.30815 5.34097 5.45606 5.49203 5.52487 5.61027 5.75927 5.98207 6.13877 6.34502 6.95498 7.03217 7.64605 8.61730 9.28962 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022850 B = 0.002450 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.092431 B =11424.998906 C =11910.665106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.226 4.226 8 H 0.082 0.918 9 N -0.639 5.639 10 C 0.130 3.870 11 C -0.082 4.082 12 C 0.168 3.832 13 C -0.089 4.089 14 C 0.124 3.876 15 N -0.594 5.594 16 C 0.563 3.437 17 O -0.579 6.579 18 C -0.151 4.151 19 C -0.059 4.059 20 C -0.105 4.105 21 C 0.049 3.951 22 O -0.205 6.205 23 C 0.014 3.986 24 C -0.215 4.215 25 C -0.150 4.150 26 C -0.035 4.035 27 C 0.104 3.896 28 C -0.112 4.112 29 H 0.246 0.754 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.016 0.984 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.143 0.857 39 H 0.158 0.842 40 H 0.251 0.749 41 H 0.185 0.815 42 H 0.152 0.848 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 -27.543 1.998 27.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.355 4.355 8 H 0.100 0.900 9 N -0.365 5.365 10 C 0.006 3.994 11 C -0.083 4.083 12 C 0.042 3.958 13 C -0.127 4.127 14 C 0.002 3.998 15 N -0.325 5.325 16 C 0.353 3.647 17 O -0.460 6.460 18 C -0.154 4.154 19 C -0.078 4.078 20 C -0.123 4.123 21 C 0.001 3.999 22 O -0.106 6.106 23 C -0.050 4.050 24 C -0.234 4.234 25 C -0.151 4.151 26 C -0.054 4.054 27 C -0.017 4.017 28 C -0.151 4.151 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.161 0.839 39 H 0.176 0.824 40 H 0.267 0.733 41 H 0.202 0.798 42 H 0.170 0.830 43 H 0.126 0.874 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.583 -27.295 1.339 27.562 hybrid contribution 0.352 1.794 0.111 1.831 sum -3.231 -25.502 1.450 25.746 Atomic orbital electron populations 1.70015 1.06384 1.25245 1.58726 1.25568 0.96486 1.00699 1.03516 0.85073 0.78289 0.79825 0.76559 1.18931 1.22183 1.22133 1.19437 0.90737 0.83537 1.41795 0.90020 1.46336 1.03517 1.00618 1.86037 1.22775 0.95554 0.83456 0.97620 1.22101 0.96657 0.94602 0.94969 1.22171 0.86973 0.90892 0.95719 1.21356 1.00413 0.97007 0.93961 1.21532 0.96699 0.83278 0.98324 1.48093 1.56263 1.20257 1.07918 1.18552 0.77817 0.82364 0.86011 1.90759 1.60957 1.78732 1.15567 1.19638 0.97044 0.98812 0.99879 1.20686 0.92660 0.95819 0.98637 1.19759 1.02101 0.95423 0.95013 1.20074 0.94198 0.90108 0.95539 1.84015 1.43232 1.41958 1.41443 1.24877 0.86444 1.00874 0.92775 1.22898 1.02679 0.97259 1.00548 1.20180 0.95331 0.99475 1.00136 1.20791 0.99955 0.92397 0.92249 1.22116 1.02855 0.99072 0.77676 1.21698 0.99392 0.92798 1.01177 0.94516 0.93140 0.92987 0.94878 0.96663 0.92354 0.92715 0.90059 0.90012 0.83938 0.82430 0.73278 0.79788 0.83045 0.87417 0.89000 0.89275 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.29 11.39 21.65 0.25 -58.04 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 7 C -0.23 -12.67 10.70 84.04 0.90 -11.77 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.64 -32.10 3.53 -722.58 -2.55 -34.65 16 10 C 0.13 4.86 7.72 86.32 0.67 5.53 16 11 C -0.08 -2.83 0.77 -52.03 -0.04 -2.87 16 12 C 0.17 7.87 6.64 86.32 0.57 8.44 16 13 C -0.09 -3.05 5.22 30.60 0.16 -2.89 16 14 C 0.12 3.57 6.29 86.42 0.54 4.11 16 15 N -0.59 -15.25 2.95 -823.08 -2.43 -17.68 16 16 C 0.56 15.71 7.21 86.74 0.63 16.33 16 17 O -0.58 -20.45 16.45 -3.93 -0.06 -20.52 16 18 C -0.15 -3.40 4.98 -20.08 -0.10 -3.50 16 19 C -0.06 -1.22 9.65 22.30 0.22 -1.00 16 20 C -0.10 -1.85 9.99 22.07 0.22 -1.63 16 21 C 0.05 0.91 7.42 23.09 0.17 1.08 16 22 O -0.21 -3.29 10.57 -8.14 -0.09 -3.38 16 23 C 0.01 0.13 11.95 66.85 0.80 0.93 16 24 C -0.22 -2.47 11.15 23.55 0.26 -2.21 16 25 C -0.15 -2.63 6.39 -20.22 -0.13 -2.76 16 26 C -0.04 -0.65 7.40 22.71 0.17 -0.48 16 27 C 0.10 2.15 5.30 86.26 0.46 2.61 16 28 C -0.11 -2.88 5.24 30.44 0.16 -2.72 16 29 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.05 1.73 8.07 -2.39 -0.02 1.71 16 31 H 0.05 1.83 7.41 -2.38 -0.02 1.81 16 32 H 0.03 1.79 7.12 -2.38 -0.02 1.77 16 33 H 0.02 0.75 8.09 -2.39 -0.02 0.73 16 34 H 0.06 2.35 8.01 -2.39 -0.02 2.33 16 35 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.08 2.17 7.49 -2.38 -0.02 2.15 16 37 H 0.08 2.52 6.99 -2.39 -0.02 2.50 16 38 H 0.14 2.80 8.06 -2.92 -0.02 2.78 16 39 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 40 H 0.25 -0.14 8.06 -2.91 -0.02 -0.16 16 41 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.15 2.22 7.15 -2.91 -0.02 2.20 16 43 H 0.11 1.87 4.50 -2.39 -0.01 1.86 16 44 H 0.09 1.61 8.07 -2.39 -0.02 1.59 16 45 H 0.09 2.11 8.12 -2.39 -0.02 2.09 16 46 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -76.09 370.98 4.26 -71.83 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 1.00 Total: 10.47 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: 6.12 Total: 3.63 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -4.73 Total: -110.37 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.15 Total: -23.90 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -76.09 4.26 -71.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035709292.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.275 kcal (2) G-P(sol) polarization free energy of solvation -76.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds