Wall clock time and date at job start Sat Apr 11 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99816 * 2 1 4 4 H 1.48499 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47077 * 300.00134 * 3 2 1 6 6 H 1.48504 * 109.47246 * 60.00418 * 3 2 1 7 7 C 1.38810 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00083 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.47428 * 126.05316 * 0.02562 * 9 7 2 11 11 C 1.54505 * 107.15016 * 181.59469 * 10 9 7 12 12 C 1.56022 * 102.61912 * 22.83089 * 11 10 9 13 13 H 1.08996 * 112.89457 * 202.90389 * 12 11 10 14 14 C 1.53209 * 106.36202 * 78.29354 * 12 11 10 15 15 N 1.46538 * 110.25176 * 202.96636 * 14 12 11 16 16 C 1.34768 * 121.01542 * 235.57102 * 15 14 12 17 17 O 1.21579 * 120.00385 * 355.59419 * 16 15 14 18 18 C 1.47706 * 120.00138 * 175.59711 * 16 15 14 19 19 C 1.40105 * 120.02347 * 50.57330 * 18 16 15 20 20 C 1.36426 * 120.68599 * 179.97438 * 19 18 16 21 21 C 1.39162 * 120.27415 * 0.02562 * 20 19 18 22 22 O 1.34752 * 133.25020 * 179.97438 * 21 20 19 23 23 C 1.34450 * 110.95107 * 180.02562 * 22 21 20 24 24 C 1.33951 * 110.20205 * 359.97438 * 23 22 21 25 25 C 1.40676 * 119.54308 * 359.97438 * 21 20 19 26 26 C 1.39084 * 120.20341 * 359.70586 * 25 21 20 27 27 C 1.47146 * 117.96733 * 55.49701 * 15 14 12 28 28 C 1.53041 * 107.73944 * 302.66417 * 27 15 14 29 29 C 1.46463 * 126.05549 * 180.02562 * 9 7 2 30 30 H 1.08999 * 108.34439 * 269.14582 * 29 9 7 31 31 H 0.96993 * 120.00296 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.90647 * 300.97487 * 10 9 7 33 33 H 1.09003 * 109.90321 * 62.03389 * 10 9 7 34 34 H 1.08997 * 110.77556 * 141.11215 * 11 10 9 35 35 H 1.08993 * 110.77836 * 264.35698 * 11 10 9 36 36 H 1.09002 * 109.34837 * 323.15236 * 14 12 11 37 37 H 1.08991 * 109.34754 * 82.70919 * 14 12 11 38 38 H 1.08001 * 119.65571 * 0.02562 * 19 18 16 39 39 H 1.08001 * 119.86591 * 179.97438 * 20 19 18 40 40 H 1.07996 * 124.89401 * 180.02562 * 23 22 21 41 41 H 1.07995 * 126.92664 * 179.97438 * 24 23 22 42 42 H 1.07991 * 120.32966 * 180.29530 * 26 25 21 43 43 H 1.09007 * 109.80916 * 183.09344 * 27 15 14 44 44 H 1.08995 * 109.81553 * 62.24763 * 27 15 14 45 45 H 1.09005 * 109.14980 * 174.78831 * 28 27 15 46 46 H 1.08994 * 109.15442 * 293.95044 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1405 -2.5437 -0.0005 11 6 -0.4379 -4.0593 0.0405 12 6 0.8718 -4.6471 0.6517 13 1 1.0213 -5.6978 0.4031 14 6 0.7970 -4.3910 2.1603 15 7 2.1418 -4.3926 2.7424 16 6 2.4555 -5.2140 3.7637 17 8 1.5970 -5.9111 4.2689 18 6 3.8422 -5.2676 4.2693 19 6 4.5149 -4.0832 4.5975 20 6 5.7957 -4.1170 5.0662 21 6 6.4531 -5.3333 5.2243 22 8 7.6857 -5.6676 5.6541 23 6 7.8596 -7.0005 5.6260 24 6 6.7501 -7.6023 5.1775 25 6 5.7877 -6.5290 4.8980 26 6 4.4796 -6.4955 4.4265 27 6 3.1397 -3.4711 2.1766 28 6 3.2669 -3.7810 0.6833 29 6 1.9201 -3.7267 -0.0005 30 1 2.0452 -4.0465 -1.0350 31 1 -0.4850 0.8400 0.0004 32 1 -0.5652 -2.0583 0.8782 33 1 -0.5602 -2.1048 -0.9058 34 1 -1.2926 -4.2682 0.6839 35 1 -0.6076 -4.4473 -0.9637 36 1 0.3282 -3.4234 2.3395 37 1 0.1992 -5.1720 2.6300 38 1 4.0141 -3.1337 4.4791 39 1 6.3019 -3.1959 5.3147 40 1 8.7631 -7.5121 5.9231 41 1 6.5949 -8.6631 5.0471 42 1 3.9652 -7.4125 4.1799 43 1 4.1011 -3.6205 2.6681 44 1 2.8110 -2.4409 2.3136 45 1 3.9318 -3.0508 0.2219 46 1 3.6907 -4.7775 0.5597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036720515.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:38 Heat of formation + Delta-G solvation = 37.024786 kcal Electronic energy + Delta-G solvation = -30073.572002 eV Core-core repulsion = 26123.691084 eV Total energy + Delta-G solvation = -3949.880918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.66629 -40.33129 -38.57850 -37.31310 -35.03269 -33.13381 -32.78841 -31.63439 -30.87668 -29.76422 -29.15683 -27.55643 -25.59485 -24.45262 -23.38916 -22.85593 -22.33933 -21.56658 -20.15579 -19.87497 -18.44271 -17.71369 -17.65923 -16.59892 -16.34508 -16.15486 -16.03912 -15.25054 -14.88963 -14.65724 -14.39031 -14.19274 -13.94304 -13.78253 -13.43531 -13.18137 -13.01631 -12.83618 -12.73989 -12.43322 -12.22087 -12.11686 -11.53458 -11.40897 -11.21868 -11.11195 -11.03881 -10.80801 -10.68553 -10.44928 -10.15959 -10.04725 -9.93190 -9.67259 -9.64105 -9.59726 -8.75048 -8.63384 -8.48931 -8.19896 -6.84541 -5.74900 -3.07699 0.71026 0.87651 2.12346 2.52840 2.79878 3.20660 3.36110 3.41522 3.44569 3.58352 4.21900 4.40153 4.45419 4.55456 4.79160 4.99785 5.07667 5.10505 5.16660 5.26285 5.34323 5.36003 5.52091 5.54641 5.60123 5.63213 5.75265 5.87427 5.90678 5.95883 6.03541 6.10779 6.11848 6.16466 6.27307 6.29130 6.31421 6.34366 6.42463 6.53953 6.69369 6.75665 6.87760 6.88937 6.92846 7.54146 7.59290 7.72119 7.79419 8.21739 8.34711 9.17593 9.79871 10.47587 11.37193 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014345 B = 0.003378 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.432557 B = 8288.157608 C = 9556.544199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.176 3.824 11 C -0.142 4.142 12 C -0.116 4.116 13 H 0.077 0.923 14 C 0.127 3.873 15 N -0.590 5.590 16 C 0.560 3.440 17 O -0.548 6.548 18 C -0.132 4.132 19 C -0.063 4.063 20 C -0.109 4.109 21 C 0.065 3.935 22 O -0.194 6.194 23 C 0.002 3.998 24 C -0.203 4.203 25 C -0.140 4.140 26 C -0.019 4.019 27 C 0.102 3.898 28 C -0.128 4.128 29 C 0.171 3.829 30 H 0.017 0.983 31 H 0.251 0.749 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.208 0.792 41 H 0.159 0.841 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.233 -13.018 8.519 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.203 4.203 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.352 4.352 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.051 3.949 11 C -0.181 4.181 12 C -0.137 4.137 13 H 0.095 0.905 14 C 0.005 3.995 15 N -0.321 5.321 16 C 0.347 3.653 17 O -0.427 6.427 18 C -0.136 4.136 19 C -0.081 4.081 20 C -0.127 4.127 21 C 0.017 3.983 22 O -0.095 6.095 23 C -0.062 4.062 24 C -0.222 4.222 25 C -0.141 4.141 26 C -0.038 4.038 27 C -0.019 4.019 28 C -0.167 4.167 29 C 0.063 3.937 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.164 0.836 39 H 0.156 0.844 40 H 0.225 0.775 41 H 0.177 0.823 42 H 0.153 0.847 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.094 0.906 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.902 -12.917 8.847 19.667 hybrid contribution 0.430 0.771 -0.215 0.909 sum 12.332 -12.146 8.631 19.342 Atomic orbital electron populations 1.69961 1.04852 1.24881 1.56946 1.24772 0.95627 0.97523 1.02394 0.86131 0.78732 0.84159 0.77252 1.20515 1.21869 1.21851 1.18999 0.90391 0.82152 1.43696 0.90284 1.44329 1.01491 0.99366 1.86765 1.21247 0.84315 0.88271 1.01025 1.23135 0.95874 0.99596 0.99514 1.22752 0.97896 0.98463 0.94571 0.90477 1.21577 0.82353 1.03093 0.92483 1.48007 1.13507 1.37947 1.32634 1.18132 0.87354 0.79755 0.80014 1.90763 1.49547 1.43986 1.58391 1.19773 0.95080 0.93839 1.04864 1.20891 0.93162 0.98202 0.95887 1.19579 0.94495 0.94587 1.04074 1.19820 0.83617 0.95569 0.99263 1.83997 1.30732 1.24601 1.70201 1.23943 1.00483 0.79889 1.01901 1.22531 0.93067 0.99636 1.06991 1.19841 0.95631 0.93012 1.05606 1.20475 0.91561 0.97237 0.94543 1.22124 0.91303 0.94458 0.94063 1.21580 0.99147 1.00798 0.95174 1.20241 0.90764 0.87083 0.95630 0.96551 0.93833 0.93492 0.93943 0.91989 0.92334 0.90117 0.90202 0.83638 0.84366 0.77531 0.82299 0.84750 0.90075 0.88953 0.90585 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.82 10.38 55.49 0.58 -25.24 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.22 -5.67 9.02 -15.06 -0.14 -5.81 16 8 H 0.08 1.92 6.69 -52.48 -0.35 1.57 16 9 N -0.59 -13.76 3.12 -164.49 -0.51 -14.28 16 10 C 0.18 4.03 4.64 -2.74 -0.01 4.02 16 11 C -0.14 -2.57 6.29 -24.32 -0.15 -2.72 16 12 C -0.12 -2.01 3.86 -88.38 -0.34 -2.35 16 13 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 14 C 0.13 2.24 5.44 -3.91 -0.02 2.22 16 15 N -0.59 -9.85 2.94 -174.15 -0.51 -10.36 16 16 C 0.56 9.37 7.24 -12.40 -0.09 9.28 16 17 O -0.55 -10.75 16.48 5.30 0.09 -10.66 16 18 C -0.13 -1.86 5.07 -104.96 -0.53 -2.39 16 19 C -0.06 -0.77 7.26 -39.54 -0.29 -1.06 16 20 C -0.11 -1.21 9.99 -39.89 -0.40 -1.61 16 21 C 0.07 0.78 7.42 -38.32 -0.28 0.49 16 22 O -0.19 -2.09 10.57 4.07 0.04 -2.04 16 23 C 0.00 0.02 11.95 29.23 0.35 0.37 16 24 C -0.20 -1.84 11.14 -37.60 -0.42 -2.26 16 25 C -0.14 -1.67 6.39 -105.18 -0.67 -2.35 16 26 C -0.02 -0.25 9.79 -38.90 -0.38 -0.63 16 27 C 0.10 1.63 5.39 -3.67 -0.02 1.61 16 28 C -0.13 -2.13 5.19 -27.64 -0.14 -2.28 16 29 C 0.17 3.28 2.85 -68.37 -0.19 3.08 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.05 1.19 6.99 -51.93 -0.36 0.83 16 33 H 0.04 1.09 7.56 -51.93 -0.39 0.70 16 34 H 0.06 1.02 7.97 -51.93 -0.41 0.61 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.08 1.60 6.80 -51.93 -0.35 1.25 16 37 H 0.08 1.41 7.01 -51.93 -0.36 1.04 16 38 H 0.15 1.65 6.99 -52.49 -0.37 1.29 16 39 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.21 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.08 1.10 4.38 -51.93 -0.23 0.87 16 44 H 0.09 1.68 7.48 -51.93 -0.39 1.29 16 45 H 0.08 1.30 7.01 -51.93 -0.36 0.94 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -31.24 360.78 -9.84 -41.08 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.10 Total: 2.65 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -3.83 Total: -2.66 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.45 Total: -49.88 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.13 Total: -12.70 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.24 -9.84 -41.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036720515.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.110 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds