Wall clock time and date at job start Sat Apr 11 2020 06:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 119.99816 * 2 1 4 4 H 1.48499 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47077 * 300.00134 * 3 2 1 6 6 H 1.48504 * 109.47246 * 60.00418 * 3 2 1 7 7 C 1.38810 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00083 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.47428 * 126.05316 * 0.02562 * 9 7 2 11 11 C 1.54505 * 107.15016 * 181.59469 * 10 9 7 12 12 C 1.56022 * 102.61912 * 22.83089 * 11 10 9 13 13 H 1.08996 * 112.89457 * 202.90389 * 12 11 10 14 14 C 1.53209 * 106.36202 * 78.29354 * 12 11 10 15 15 N 1.46538 * 110.25176 * 202.96636 * 14 12 11 16 16 C 1.34768 * 121.01542 * 235.57102 * 15 14 12 17 17 O 1.21579 * 120.00385 * 355.59419 * 16 15 14 18 18 C 1.47706 * 120.00138 * 175.59711 * 16 15 14 19 19 C 1.40105 * 120.02347 * 50.57330 * 18 16 15 20 20 C 1.36426 * 120.68599 * 179.97438 * 19 18 16 21 21 C 1.39162 * 120.27415 * 0.02562 * 20 19 18 22 22 O 1.34752 * 133.25020 * 179.97438 * 21 20 19 23 23 C 1.34450 * 110.95107 * 180.02562 * 22 21 20 24 24 C 1.33951 * 110.20205 * 359.97438 * 23 22 21 25 25 C 1.40676 * 119.54308 * 359.97438 * 21 20 19 26 26 C 1.39084 * 120.20341 * 359.70586 * 25 21 20 27 27 C 1.47146 * 117.96733 * 55.49701 * 15 14 12 28 28 C 1.53041 * 107.73944 * 302.66417 * 27 15 14 29 29 C 1.46463 * 126.05549 * 180.02562 * 9 7 2 30 30 H 1.08999 * 108.34439 * 269.14582 * 29 9 7 31 31 H 0.96993 * 120.00296 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.90647 * 300.97487 * 10 9 7 33 33 H 1.09003 * 109.90321 * 62.03389 * 10 9 7 34 34 H 1.08997 * 110.77556 * 141.11215 * 11 10 9 35 35 H 1.08993 * 110.77836 * 264.35698 * 11 10 9 36 36 H 1.09002 * 109.34837 * 323.15236 * 14 12 11 37 37 H 1.08991 * 109.34754 * 82.70919 * 14 12 11 38 38 H 1.08001 * 119.65571 * 0.02562 * 19 18 16 39 39 H 1.08001 * 119.86591 * 179.97438 * 20 19 18 40 40 H 1.07996 * 124.89401 * 180.02562 * 23 22 21 41 41 H 1.07995 * 126.92664 * 179.97438 * 24 23 22 42 42 H 1.07991 * 120.32966 * 180.29530 * 26 25 21 43 43 H 1.09007 * 109.80916 * 183.09344 * 27 15 14 44 44 H 1.08995 * 109.81553 * 62.24763 * 27 15 14 45 45 H 1.09005 * 109.14980 * 174.78831 * 28 27 15 46 46 H 1.08994 * 109.15442 * 293.95044 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1405 -2.5437 -0.0005 11 6 -0.4379 -4.0593 0.0405 12 6 0.8718 -4.6471 0.6517 13 1 1.0213 -5.6978 0.4031 14 6 0.7970 -4.3910 2.1603 15 7 2.1418 -4.3926 2.7424 16 6 2.4555 -5.2140 3.7637 17 8 1.5970 -5.9111 4.2689 18 6 3.8422 -5.2676 4.2693 19 6 4.5149 -4.0832 4.5975 20 6 5.7957 -4.1170 5.0662 21 6 6.4531 -5.3333 5.2243 22 8 7.6857 -5.6676 5.6541 23 6 7.8596 -7.0005 5.6260 24 6 6.7501 -7.6023 5.1775 25 6 5.7877 -6.5290 4.8980 26 6 4.4796 -6.4955 4.4265 27 6 3.1397 -3.4711 2.1766 28 6 3.2669 -3.7810 0.6833 29 6 1.9201 -3.7267 -0.0005 30 1 2.0452 -4.0465 -1.0350 31 1 -0.4850 0.8400 0.0004 32 1 -0.5652 -2.0583 0.8782 33 1 -0.5602 -2.1048 -0.9058 34 1 -1.2926 -4.2682 0.6839 35 1 -0.6076 -4.4473 -0.9637 36 1 0.3282 -3.4234 2.3395 37 1 0.1992 -5.1720 2.6300 38 1 4.0141 -3.1337 4.4791 39 1 6.3019 -3.1959 5.3147 40 1 8.7631 -7.5121 5.9231 41 1 6.5949 -8.6631 5.0471 42 1 3.9652 -7.4125 4.1799 43 1 4.1011 -3.6205 2.6681 44 1 2.8110 -2.4409 2.3136 45 1 3.9318 -3.0508 0.2219 46 1 3.6907 -4.7775 0.5597 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036720515.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:36 Heat of formation + Delta-G solvation = 19.707458 kcal Electronic energy + Delta-G solvation = -30074.322938 eV Core-core repulsion = 26123.691084 eV Total energy + Delta-G solvation = -3950.631854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -43.44670 -41.67361 -39.97980 -38.40708 -36.53972 -34.62737 -33.85121 -33.19418 -31.94905 -30.96619 -30.46216 -29.07817 -27.07779 -26.06617 -24.51207 -24.13118 -23.47066 -22.31154 -21.83625 -21.21039 -19.87946 -18.82960 -18.50512 -18.24688 -17.40706 -17.31568 -17.07058 -16.89148 -16.31113 -16.15105 -15.66376 -15.50976 -15.24155 -14.97130 -14.67754 -14.33777 -14.16588 -13.98513 -13.87830 -13.69853 -13.60644 -13.39022 -13.17790 -12.98934 -12.83854 -12.61326 -12.50471 -12.24150 -12.06847 -11.92663 -11.67019 -11.52358 -11.48977 -11.24557 -11.17914 -10.94590 -10.63161 -9.77841 -9.56186 -9.26738 -8.78327 -7.76887 -5.09938 -0.15787 -0.05666 1.42416 1.49389 1.50557 1.55824 1.59535 1.80397 1.95697 2.54563 2.58861 3.32397 3.42738 3.51389 3.60262 3.65057 3.82878 3.91071 3.98912 4.06348 4.16487 4.22328 4.24064 4.27758 4.38921 4.47129 4.57207 4.60543 4.63647 4.76980 4.81367 4.85570 4.88720 4.97223 5.03344 5.11400 5.12325 5.19574 5.24611 5.27132 5.39079 5.42495 5.45291 5.52367 5.60750 5.70669 5.83081 6.10719 6.26544 6.39754 7.02137 7.17158 7.86644 8.53670 9.34850 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014345 B = 0.003378 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.432557 B = 8288.157608 C = 9556.544199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.966 3.034 4 H -0.259 1.259 5 H -0.302 1.302 6 H -0.299 1.299 7 C -0.215 4.215 8 H 0.091 0.909 9 N -0.607 5.607 10 C 0.185 3.815 11 C -0.130 4.130 12 C -0.103 4.103 13 H 0.105 0.895 14 C 0.133 3.867 15 N -0.591 5.591 16 C 0.563 3.437 17 O -0.581 6.581 18 C -0.148 4.148 19 C -0.072 4.072 20 C -0.101 4.101 21 C 0.051 3.949 22 O -0.202 6.202 23 C 0.019 3.981 24 C -0.220 4.220 25 C -0.151 4.151 26 C -0.026 4.026 27 C 0.111 3.889 28 C -0.123 4.123 29 C 0.163 3.837 30 H 0.016 0.984 31 H 0.241 0.759 32 H 0.012 0.988 33 H 0.004 0.996 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.150 0.850 39 H 0.162 0.838 40 H 0.255 0.745 41 H 0.182 0.818 42 H 0.135 0.865 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.661 -15.000 9.268 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.261 4.261 3 Si 0.796 3.204 4 H -0.183 1.183 5 H -0.229 1.229 6 H -0.227 1.227 7 C -0.344 4.344 8 H 0.109 0.891 9 N -0.333 5.333 10 C 0.060 3.940 11 C -0.168 4.168 12 C -0.123 4.123 13 H 0.123 0.877 14 C 0.010 3.990 15 N -0.321 5.321 16 C 0.353 3.647 17 O -0.463 6.463 18 C -0.151 4.151 19 C -0.091 4.091 20 C -0.119 4.119 21 C 0.003 3.997 22 O -0.103 6.103 23 C -0.045 4.045 24 C -0.238 4.238 25 C -0.152 4.152 26 C -0.045 4.045 27 C -0.011 4.011 28 C -0.162 4.162 29 C 0.056 3.944 30 H 0.033 0.967 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.022 0.978 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.167 0.833 39 H 0.180 0.820 40 H 0.271 0.729 41 H 0.199 0.801 42 H 0.153 0.847 43 H 0.127 0.873 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.379 -14.927 9.591 23.480 hybrid contribution -0.529 1.279 -0.395 1.440 sum 14.849 -13.648 9.196 22.166 Atomic orbital electron populations 1.70183 1.06303 1.24669 1.59234 1.25522 0.96343 1.00629 1.03645 0.85167 0.78702 0.80371 0.76129 1.18341 1.22940 1.22655 1.19391 0.91085 0.82921 1.41030 0.89095 1.44551 1.01825 1.00573 1.86328 1.20968 0.84277 0.91263 0.97513 1.23012 0.97057 0.95765 1.00985 1.22719 0.96399 0.99382 0.93765 0.87700 1.21390 0.83104 1.01499 0.93006 1.48018 1.13132 1.38162 1.32748 1.18529 0.88239 0.78765 0.79215 1.90736 1.50887 1.45345 1.59311 1.19602 0.93759 0.95125 1.06637 1.20895 0.93713 0.97674 0.96784 1.19797 0.93916 0.95531 1.02628 1.20044 0.84290 0.95841 0.99552 1.84022 1.30018 1.26277 1.69996 1.24889 1.01528 0.78592 0.99479 1.22880 0.92700 1.00378 1.07877 1.20164 0.95493 0.94473 1.05090 1.20517 0.92236 0.96849 0.94920 1.22061 0.92226 0.92799 0.94009 1.21535 0.97454 1.02173 0.95070 1.20460 0.92509 0.85300 0.96094 0.96663 0.94920 0.97008 0.97759 0.90391 0.90761 0.93021 0.90039 0.83291 0.82032 0.72932 0.80058 0.84686 0.87291 0.91634 0.90815 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.20 10.38 21.65 0.22 -55.98 16 2 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 3 Si 0.97 44.23 29.55 68.60 2.03 46.25 16 4 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.22 -11.01 9.02 84.03 0.76 -10.25 16 8 H 0.09 4.34 6.69 -2.91 -0.02 4.32 16 9 N -0.61 -28.62 3.12 -674.34 -2.11 -30.72 16 10 C 0.18 8.82 4.64 86.71 0.40 9.23 16 11 C -0.13 -4.63 6.29 32.15 0.20 -4.42 16 12 C -0.10 -3.42 3.86 -9.34 -0.04 -3.45 16 13 H 0.10 3.01 8.14 -2.39 -0.02 3.00 16 14 C 0.13 4.69 5.44 86.44 0.47 5.16 16 15 N -0.59 -19.44 2.94 -823.16 -2.42 -21.86 16 16 C 0.56 18.62 7.24 86.75 0.63 19.25 16 17 O -0.58 -22.87 16.48 -3.96 -0.07 -22.94 16 18 C -0.15 -4.02 5.07 -20.08 -0.10 -4.13 16 19 C -0.07 -1.66 7.26 22.30 0.16 -1.50 16 20 C -0.10 -2.02 9.99 22.07 0.22 -1.80 16 21 C 0.05 1.08 7.42 23.09 0.17 1.25 16 22 O -0.20 -3.67 10.57 -8.36 -0.09 -3.76 16 23 C 0.02 0.22 11.95 66.84 0.80 1.02 16 24 C -0.22 -3.26 11.14 23.55 0.26 -3.00 16 25 C -0.15 -3.29 6.39 -20.22 -0.13 -3.42 16 26 C -0.03 -0.65 9.79 22.71 0.22 -0.43 16 27 C 0.11 3.42 5.39 86.27 0.46 3.88 16 28 C -0.12 -3.90 5.19 30.00 0.16 -3.74 16 29 C 0.16 6.10 2.85 44.73 0.13 6.23 16 30 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 32 H 0.01 0.63 6.99 -2.39 -0.02 0.62 16 33 H 0.00 0.23 7.56 -2.39 -0.02 0.21 16 34 H 0.08 2.54 7.97 -2.39 -0.02 2.52 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.05 2.13 6.80 -2.39 -0.02 2.11 16 37 H 0.08 2.86 7.01 -2.39 -0.02 2.84 16 38 H 0.15 3.24 6.99 -2.91 -0.02 3.22 16 39 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 40 H 0.25 0.23 8.06 -2.91 -0.02 0.21 16 41 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.14 3.20 8.06 -2.92 -0.02 3.18 16 43 H 0.11 2.78 4.38 -2.38 -0.01 2.77 16 44 H 0.07 2.40 7.48 -2.39 -0.02 2.38 16 45 H 0.07 2.38 7.01 -2.38 -0.02 2.36 16 46 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -70.86 360.78 3.83 -67.03 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.01 Total: 15.40 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 5.24 Total: 6.58 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -4.30 Total: -108.56 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.15 Total: -26.70 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -70.86 3.83 -67.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036720515.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.737 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds