Wall clock time and date at job start Sat Apr 11 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00130 * 2 1 4 4 H 1.48497 * 109.47686 * 240.00187 * 3 2 1 5 5 H 1.48496 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47054 * 120.00458 * 3 2 1 7 7 C 1.38809 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00519 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99792 * 359.97438 * 7 2 1 10 10 C 1.48164 * 126.40355 * 359.97179 * 9 7 2 11 11 C 1.55289 * 107.04153 * 184.92528 * 10 9 7 12 12 C 1.53744 * 101.84407 * 22.47867 * 11 10 9 13 13 H 1.09005 * 111.30164 * 79.84245 * 12 11 10 14 14 C 1.52240 * 114.74862 * 207.23322 * 12 11 10 15 15 N 1.47722 * 106.35368 * 169.60245 * 14 12 11 16 16 C 1.34784 * 119.67999 * 127.94719 * 15 14 12 17 17 O 1.21570 * 120.00191 * 3.75322 * 16 15 14 18 18 C 1.47697 * 119.99587 * 183.75667 * 16 15 14 19 19 C 1.40104 * 120.02586 * 130.01170 * 18 16 15 20 20 C 1.36426 * 120.68804 * 180.22891 * 19 18 16 21 21 C 1.39161 * 120.27511 * 359.48965 * 20 19 18 22 22 O 1.34748 * 133.26031 * 180.18094 * 21 20 19 23 23 C 1.34442 * 110.95703 * 180.28929 * 22 21 20 24 24 C 1.33952 * 110.19991 * 0.02562 * 23 22 21 25 25 C 1.40675 * 119.53661 * 0.49568 * 21 20 19 26 26 C 1.39080 * 120.21148 * 359.76291 * 25 21 20 27 27 C 1.46591 * 120.63597 * 308.22585 * 15 14 12 28 28 C 1.53535 * 110.81812 * 47.44757 * 27 15 14 29 29 C 1.45466 * 126.40395 * 179.97438 * 9 7 2 30 30 H 1.09005 * 109.26941 * 266.20996 * 29 9 7 31 31 H 0.97000 * 119.99798 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.91474 * 65.57902 * 10 9 7 33 33 H 1.09001 * 109.91760 * 304.27174 * 10 9 7 34 34 H 1.09008 * 110.95127 * 264.34398 * 11 10 9 35 35 H 1.09002 * 110.95685 * 140.62159 * 11 10 9 36 36 H 1.09002 * 110.07097 * 50.40220 * 14 12 11 37 37 H 1.08998 * 110.07284 * 288.81545 * 14 12 11 38 38 H 1.08003 * 119.65385 * 359.94210 * 19 18 16 39 39 H 1.08004 * 119.86504 * 179.71063 * 20 19 18 40 40 H 1.08001 * 124.89900 * 179.97438 * 23 22 21 41 41 H 1.07994 * 126.92590 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.33694 * 180.02562 * 26 25 21 43 43 H 1.08994 * 109.25634 * 167.82875 * 27 15 14 44 44 H 1.09008 * 109.24898 * 287.25492 * 27 15 14 45 45 H 1.09000 * 109.96415 * 189.66894 * 28 27 15 46 46 H 1.09005 * 109.71626 * 68.64239 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1469 -2.5533 0.0006 11 6 -0.4341 -4.0741 0.1276 12 6 0.8689 -4.5895 0.7603 13 1 0.8865 -4.4071 1.8349 14 6 1.2011 -6.0409 0.4427 15 7 2.5829 -6.2642 0.9148 16 6 2.8496 -7.3036 1.7304 17 8 1.9697 -8.0911 2.0193 18 6 4.2111 -7.4857 2.2734 19 6 4.3965 -7.6907 3.6469 20 6 5.6483 -7.8558 4.1635 21 6 6.7608 -7.8331 3.3277 22 8 8.0835 -7.9679 3.5470 23 6 8.7744 -7.8634 2.3985 24 6 7.9383 -7.6548 1.3730 25 6 6.5868 -7.6281 1.9469 26 6 5.3113 -7.4544 1.4204 27 6 3.6656 -5.3628 0.5098 28 6 3.2479 -3.8956 0.6836 29 6 1.9078 -3.7211 -0.0016 30 1 1.9887 -4.0775 -1.0285 31 1 -0.4850 0.8401 0.0004 32 1 -0.5638 -2.1732 -0.9320 33 1 -0.5796 -2.0216 0.8481 34 1 -0.5959 -4.5234 -0.8523 35 1 -1.2850 -4.2567 0.7838 36 1 1.1410 -6.2117 -0.6322 37 1 0.5145 -6.7053 0.9672 38 1 3.5398 -7.7137 4.3041 39 1 5.7763 -8.0083 5.2250 40 1 9.8487 -7.9363 2.3149 41 1 8.2044 -7.5313 0.3337 42 1 5.1753 -7.2974 0.3607 43 1 4.5456 -5.5602 1.1219 44 1 3.9095 -5.5419 -0.5375 45 1 3.9878 -3.2410 0.2229 46 1 3.1551 -3.6629 1.7444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036720516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:40 Heat of formation + Delta-G solvation = 37.631679 kcal Electronic energy + Delta-G solvation = -29578.444303 eV Core-core repulsion = 25628.589702 eV Total energy + Delta-G solvation = -3949.854601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.74923 -40.49125 -38.59598 -37.42342 -35.43702 -33.17475 -32.78911 -31.60329 -31.16033 -29.68331 -29.40253 -28.03256 -25.28764 -24.40523 -23.35401 -22.63567 -22.31546 -21.62402 -20.21080 -19.94371 -19.20133 -17.91218 -17.51084 -17.01507 -16.41207 -16.30333 -15.93423 -15.19608 -15.13473 -14.59815 -14.51704 -14.22702 -13.93681 -13.86711 -13.46502 -13.32791 -13.09688 -13.01663 -12.76722 -12.63584 -12.46500 -12.20606 -11.65812 -11.52000 -11.45107 -11.26121 -10.85956 -10.80476 -10.72181 -10.52400 -10.20210 -10.12824 -9.91996 -9.77337 -9.64080 -9.49428 -8.86392 -8.63471 -8.54386 -8.53917 -6.85158 -5.72741 -3.06029 0.59191 0.79296 2.06393 2.46001 2.63399 2.98357 3.38828 3.43198 3.44633 3.45477 4.08758 4.30200 4.41646 4.48115 4.70690 4.87168 5.00348 5.01227 5.04981 5.08806 5.24548 5.25838 5.32793 5.50982 5.53834 5.56080 5.60209 5.77757 5.80820 5.84992 5.88470 6.01102 6.03786 6.04581 6.14613 6.16951 6.21806 6.22161 6.34887 6.47617 6.60329 6.62556 6.80304 6.81715 7.04983 7.42377 7.53906 7.60439 7.79679 8.14587 8.23243 9.18114 9.81720 10.49807 11.39738 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.003044 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.296458 B = 9194.954314 C =10640.190437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.080 0.920 14 C 0.127 3.873 15 N -0.598 5.598 16 C 0.560 3.440 17 O -0.541 6.541 18 C -0.136 4.136 19 C -0.045 4.045 20 C -0.109 4.109 21 C 0.067 3.933 22 O -0.194 6.194 23 C 0.005 3.995 24 C -0.203 4.203 25 C -0.139 4.139 26 C -0.036 4.036 27 C 0.102 3.898 28 C -0.130 4.130 29 C 0.168 3.832 30 H 0.020 0.980 31 H 0.253 0.747 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.209 0.791 41 H 0.161 0.839 42 H 0.137 0.863 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.800 -16.790 3.705 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.145 4.145 13 H 0.098 0.902 14 C 0.005 3.995 15 N -0.329 5.329 16 C 0.348 3.652 17 O -0.419 6.419 18 C -0.139 4.139 19 C -0.064 4.064 20 C -0.127 4.127 21 C 0.019 3.981 22 O -0.095 6.095 23 C -0.060 4.060 24 C -0.222 4.222 25 C -0.140 4.140 26 C -0.055 4.055 27 C -0.021 4.021 28 C -0.169 4.169 29 C 0.060 3.940 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.226 0.774 41 H 0.178 0.822 42 H 0.155 0.845 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.368 -16.964 4.077 21.979 hybrid contribution 0.620 1.099 -0.280 1.293 sum 13.988 -15.864 3.798 21.488 Atomic orbital electron populations 1.69925 1.04893 1.25167 1.56889 1.24786 0.95671 0.97620 1.02293 0.86238 0.78497 0.83394 0.77859 1.21196 1.21615 1.21209 1.18943 0.90314 0.82329 1.43917 0.90453 1.44197 1.01657 0.99433 1.86602 1.21532 0.83911 0.88288 1.00966 1.22721 0.95737 0.99677 0.99340 1.22641 0.97925 0.93217 1.00681 0.90190 1.21672 0.81253 0.97235 0.99342 1.48254 1.10128 1.27009 1.47549 1.18227 0.87458 0.81193 0.78346 1.90776 1.47310 1.43855 1.59941 1.19777 0.93207 1.06282 0.94634 1.20623 0.96540 0.95501 0.93757 1.19578 0.88285 1.05265 0.99615 1.19830 0.82891 1.01057 0.94320 1.84001 1.16406 1.74956 1.34187 1.23973 0.97958 1.01783 0.82287 1.22548 0.90363 1.08677 1.00615 1.19841 0.94198 1.06727 0.93278 1.20734 0.89300 0.95465 0.99961 1.22022 0.89428 0.90517 1.00176 1.21827 0.99498 0.93455 1.02118 1.20623 0.91054 0.87237 0.95092 0.96293 0.93693 0.94347 0.92728 0.92304 0.92018 0.91133 0.89119 0.83932 0.84401 0.77450 0.82154 0.84529 0.89524 0.91566 0.90478 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.44 55.49 0.58 -26.18 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.10 9.88 -15.06 -0.15 -6.25 16 8 H 0.08 1.99 7.21 -52.49 -0.38 1.61 16 9 N -0.59 -14.63 3.35 -163.09 -0.55 -15.18 16 10 C 0.18 4.22 5.45 -1.91 -0.01 4.21 16 11 C -0.14 -2.49 6.54 -25.13 -0.16 -2.65 16 12 C -0.12 -2.18 2.85 -89.36 -0.26 -2.44 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.13 1.92 5.95 -3.76 -0.02 1.90 16 15 N -0.60 -8.67 3.01 -173.92 -0.52 -9.19 16 16 C 0.56 8.40 7.21 -12.39 -0.09 8.31 16 17 O -0.54 -9.66 16.41 5.30 0.09 -9.57 16 18 C -0.14 -1.72 4.93 -104.96 -0.52 -2.24 16 19 C -0.05 -0.52 9.64 -39.54 -0.38 -0.90 16 20 C -0.11 -1.11 9.99 -39.89 -0.40 -1.51 16 21 C 0.07 0.73 7.42 -38.32 -0.28 0.45 16 22 O -0.19 -1.94 10.57 4.10 0.04 -1.90 16 23 C 0.00 0.03 11.95 29.23 0.35 0.38 16 24 C -0.20 -1.67 11.14 -37.61 -0.42 -2.09 16 25 C -0.14 -1.50 6.39 -105.18 -0.67 -2.17 16 26 C -0.04 -0.40 7.42 -38.90 -0.29 -0.69 16 27 C 0.10 1.35 5.02 -3.71 -0.02 1.33 16 28 C -0.13 -2.17 5.46 -27.20 -0.15 -2.32 16 29 C 0.17 3.29 2.57 -67.98 -0.17 3.12 16 30 H 0.02 0.39 7.92 -51.93 -0.41 -0.02 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 33 H 0.05 1.45 7.21 -51.93 -0.37 1.07 16 34 H 0.06 0.99 8.12 -51.92 -0.42 0.57 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 37 H 0.09 1.41 7.02 -51.93 -0.36 1.04 16 38 H 0.14 1.49 8.06 -52.48 -0.42 1.06 16 39 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 40 H 0.21 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.14 1.32 7.02 -52.49 -0.37 0.95 16 43 H 0.09 1.03 4.69 -51.93 -0.24 0.79 16 44 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 45 H 0.08 1.30 7.62 -51.93 -0.40 0.90 16 46 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -32.83 365.71 -9.91 -42.74 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.30 Total: 0.88 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -3.74 Total: -3.86 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: -0.49 Total: -50.54 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.13 Total: -11.47 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.83 -9.91 -42.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036720516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.375 kcal (2) G-P(sol) polarization free energy of solvation -32.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds