Wall clock time and date at job start Sat Apr 11 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00130 * 2 1 4 4 H 1.48497 * 109.47686 * 240.00187 * 3 2 1 5 5 H 1.48496 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47054 * 120.00458 * 3 2 1 7 7 C 1.38809 * 120.00204 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00519 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99792 * 359.97438 * 7 2 1 10 10 C 1.48164 * 126.40355 * 359.97179 * 9 7 2 11 11 C 1.55289 * 107.04153 * 184.92528 * 10 9 7 12 12 C 1.53744 * 101.84407 * 22.47867 * 11 10 9 13 13 H 1.09005 * 111.30164 * 79.84245 * 12 11 10 14 14 C 1.52240 * 114.74862 * 207.23322 * 12 11 10 15 15 N 1.47722 * 106.35368 * 169.60245 * 14 12 11 16 16 C 1.34784 * 119.67999 * 127.94719 * 15 14 12 17 17 O 1.21570 * 120.00191 * 3.75322 * 16 15 14 18 18 C 1.47697 * 119.99587 * 183.75667 * 16 15 14 19 19 C 1.40104 * 120.02586 * 130.01170 * 18 16 15 20 20 C 1.36426 * 120.68804 * 180.22891 * 19 18 16 21 21 C 1.39161 * 120.27511 * 359.48965 * 20 19 18 22 22 O 1.34748 * 133.26031 * 180.18094 * 21 20 19 23 23 C 1.34442 * 110.95703 * 180.28929 * 22 21 20 24 24 C 1.33952 * 110.19991 * 0.02562 * 23 22 21 25 25 C 1.40675 * 119.53661 * 0.49568 * 21 20 19 26 26 C 1.39080 * 120.21148 * 359.76291 * 25 21 20 27 27 C 1.46591 * 120.63597 * 308.22585 * 15 14 12 28 28 C 1.53535 * 110.81812 * 47.44757 * 27 15 14 29 29 C 1.45466 * 126.40395 * 179.97438 * 9 7 2 30 30 H 1.09005 * 109.26941 * 266.20996 * 29 9 7 31 31 H 0.97000 * 119.99798 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.91474 * 65.57902 * 10 9 7 33 33 H 1.09001 * 109.91760 * 304.27174 * 10 9 7 34 34 H 1.09008 * 110.95127 * 264.34398 * 11 10 9 35 35 H 1.09002 * 110.95685 * 140.62159 * 11 10 9 36 36 H 1.09002 * 110.07097 * 50.40220 * 14 12 11 37 37 H 1.08998 * 110.07284 * 288.81545 * 14 12 11 38 38 H 1.08003 * 119.65385 * 359.94210 * 19 18 16 39 39 H 1.08004 * 119.86504 * 179.71063 * 20 19 18 40 40 H 1.08001 * 124.89900 * 179.97438 * 23 22 21 41 41 H 1.07994 * 126.92590 * 179.97438 * 24 23 22 42 42 H 1.07995 * 120.33694 * 180.02562 * 26 25 21 43 43 H 1.08994 * 109.25634 * 167.82875 * 27 15 14 44 44 H 1.09008 * 109.24898 * 287.25492 * 27 15 14 45 45 H 1.09000 * 109.96415 * 189.66894 * 28 27 15 46 46 H 1.09005 * 109.71626 * 68.64239 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1469 -2.5533 0.0006 11 6 -0.4341 -4.0741 0.1276 12 6 0.8689 -4.5895 0.7603 13 1 0.8865 -4.4071 1.8349 14 6 1.2011 -6.0409 0.4427 15 7 2.5829 -6.2642 0.9148 16 6 2.8496 -7.3036 1.7304 17 8 1.9697 -8.0911 2.0193 18 6 4.2111 -7.4857 2.2734 19 6 4.3965 -7.6907 3.6469 20 6 5.6483 -7.8558 4.1635 21 6 6.7608 -7.8331 3.3277 22 8 8.0835 -7.9679 3.5470 23 6 8.7744 -7.8634 2.3985 24 6 7.9383 -7.6548 1.3730 25 6 6.5868 -7.6281 1.9469 26 6 5.3113 -7.4544 1.4204 27 6 3.6656 -5.3628 0.5098 28 6 3.2479 -3.8956 0.6836 29 6 1.9078 -3.7211 -0.0016 30 1 1.9887 -4.0775 -1.0285 31 1 -0.4850 0.8401 0.0004 32 1 -0.5638 -2.1732 -0.9320 33 1 -0.5796 -2.0216 0.8481 34 1 -0.5959 -4.5234 -0.8523 35 1 -1.2850 -4.2567 0.7838 36 1 1.1410 -6.2117 -0.6322 37 1 0.5145 -6.7053 0.9672 38 1 3.5398 -7.7137 4.3041 39 1 5.7763 -8.0083 5.2250 40 1 9.8487 -7.9363 2.3149 41 1 8.2044 -7.5313 0.3337 42 1 5.1753 -7.2974 0.3607 43 1 4.5456 -5.5602 1.1219 44 1 3.9095 -5.5419 -0.5375 45 1 3.9878 -3.2410 0.2229 46 1 3.1551 -3.6629 1.7444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036720516.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:39 Heat of formation + Delta-G solvation = 18.779748 kcal Electronic energy + Delta-G solvation = -29579.261785 eV Core-core repulsion = 25628.589702 eV Total energy + Delta-G solvation = -3950.672083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.44746 -41.68997 -39.95796 -38.40274 -36.87880 -34.58993 -33.84398 -33.08213 -32.26568 -30.99405 -30.37804 -29.52601 -26.81175 -25.84637 -24.38563 -23.83530 -23.41761 -22.31131 -21.88135 -21.34594 -20.45603 -18.93008 -18.50765 -18.11001 -17.73020 -17.17204 -17.01290 -16.93210 -16.29927 -16.10003 -15.71967 -15.44592 -15.26634 -14.96537 -14.63638 -14.54044 -14.17582 -14.09835 -13.84028 -13.69405 -13.60682 -13.42094 -13.29932 -13.10884 -12.95203 -12.64825 -12.51293 -12.13391 -12.07788 -12.00484 -11.78260 -11.60789 -11.52427 -11.22263 -11.07701 -10.94121 -10.69041 -9.82422 -9.63682 -9.24633 -8.86447 -7.82313 -5.16739 -0.18456 -0.02467 1.43387 1.46505 1.49336 1.54039 1.55390 1.80408 1.90154 2.51307 2.59527 3.25454 3.36378 3.47070 3.54691 3.65726 3.81032 3.86607 3.99382 4.01130 4.15832 4.18622 4.22419 4.26675 4.38607 4.42086 4.49879 4.63637 4.64944 4.69406 4.79079 4.80429 4.85868 4.89101 5.00683 5.05029 5.08595 5.11993 5.18269 5.24512 5.42069 5.45938 5.47626 5.53561 5.53813 5.67106 5.77515 6.11440 6.21741 6.27502 6.99345 7.10438 7.80808 8.49489 9.29434 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.003044 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.296458 B = 9194.954314 C =10640.190437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.231 4.231 8 H 0.087 0.913 9 N -0.616 5.616 10 C 0.182 3.818 11 C -0.121 4.121 12 C -0.110 4.110 13 H 0.061 0.939 14 C 0.135 3.865 15 N -0.598 5.598 16 C 0.563 3.437 17 O -0.574 6.574 18 C -0.154 4.154 19 C -0.059 4.059 20 C -0.106 4.106 21 C 0.049 3.951 22 O -0.205 6.205 23 C 0.014 3.986 24 C -0.216 4.216 25 C -0.152 4.152 26 C -0.036 4.036 27 C 0.112 3.888 28 C -0.123 4.123 29 C 0.159 3.841 30 H 0.026 0.974 31 H 0.245 0.755 32 H 0.005 0.995 33 H 0.015 0.985 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.252 0.748 41 H 0.185 0.815 42 H 0.151 0.849 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.927 -18.325 3.269 25.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.204 1.204 7 C -0.360 4.360 8 H 0.105 0.895 9 N -0.340 5.340 10 C 0.057 3.943 11 C -0.160 4.160 12 C -0.130 4.130 13 H 0.080 0.920 14 C 0.013 3.987 15 N -0.329 5.329 16 C 0.352 3.648 17 O -0.455 6.455 18 C -0.157 4.157 19 C -0.078 4.078 20 C -0.124 4.124 21 C 0.001 3.999 22 O -0.106 6.106 23 C -0.049 4.049 24 C -0.234 4.234 25 C -0.153 4.153 26 C -0.054 4.054 27 C -0.011 4.011 28 C -0.162 4.162 29 C 0.052 3.948 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.023 0.977 33 H 0.034 0.966 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.162 0.838 39 H 0.177 0.823 40 H 0.268 0.732 41 H 0.202 0.798 42 H 0.169 0.831 43 H 0.122 0.878 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.539 -18.527 3.637 25.101 hybrid contribution -0.248 1.534 -0.128 1.559 sum 16.292 -16.994 3.510 23.802 Atomic orbital electron populations 1.70158 1.06361 1.25148 1.58715 1.25621 0.96511 1.00977 1.03144 0.85211 0.77143 0.79125 0.78246 1.20122 1.22498 1.20406 1.19374 0.91036 0.83411 1.42147 0.89487 1.44487 1.02236 1.00836 1.86442 1.21301 0.83741 0.91639 0.97588 1.22590 0.96800 0.95495 1.01084 1.22466 0.96681 0.94689 0.99181 0.92028 1.21557 0.81860 0.94891 1.00429 1.48286 1.10054 1.27115 1.47477 1.18551 0.88082 0.80604 0.77562 1.90751 1.48659 1.45111 1.60995 1.19677 0.92296 1.08329 0.95393 1.20701 0.97231 0.96308 0.93530 1.19772 0.87749 1.04153 1.00709 1.20081 0.83580 1.01455 0.94769 1.84016 1.16011 1.74917 1.35648 1.24882 0.99564 0.99456 0.81012 1.22898 0.89059 1.09344 1.02147 1.20188 0.95143 1.06307 0.93613 1.20832 0.89038 0.95149 1.00406 1.22042 0.89335 0.87664 1.02040 1.21744 0.97850 0.96111 1.00505 1.20862 0.93026 0.85075 0.95879 0.95627 0.94616 0.97664 0.96616 0.90120 0.90430 0.89288 0.89234 0.83839 0.82344 0.73195 0.79807 0.83103 0.87792 0.89093 0.90462 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.74 10.44 21.65 0.23 -57.51 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 3 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.23 -12.57 9.88 84.03 0.83 -11.74 16 8 H 0.09 4.44 7.21 -2.91 -0.02 4.42 16 9 N -0.62 -30.83 3.35 -669.89 -2.24 -33.07 16 10 C 0.18 9.00 5.45 86.85 0.47 9.48 16 11 C -0.12 -4.39 6.54 31.63 0.21 -4.18 16 12 C -0.11 -3.79 2.85 -9.98 -0.03 -3.82 16 13 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 14 C 0.13 3.84 5.95 85.89 0.51 4.35 16 15 N -0.60 -16.31 3.01 -822.41 -2.47 -18.78 16 16 C 0.56 16.27 7.21 86.74 0.63 16.90 16 17 O -0.57 -20.28 16.41 -3.94 -0.06 -20.34 16 18 C -0.15 -3.71 4.93 -20.08 -0.10 -3.81 16 19 C -0.06 -1.30 9.64 22.30 0.21 -1.08 16 20 C -0.11 -2.01 9.99 22.07 0.22 -1.79 16 21 C 0.05 0.99 7.42 23.09 0.17 1.16 16 22 O -0.20 -3.55 10.57 -8.24 -0.09 -3.64 16 23 C 0.01 0.15 11.95 66.84 0.80 0.95 16 24 C -0.22 -2.81 11.14 23.55 0.26 -2.55 16 25 C -0.15 -2.91 6.39 -20.23 -0.13 -3.04 16 26 C -0.04 -0.72 7.42 22.71 0.17 -0.55 16 27 C 0.11 2.69 5.02 86.54 0.43 3.12 16 28 C -0.12 -3.96 5.46 30.29 0.17 -3.80 16 29 C 0.16 6.09 2.57 45.52 0.12 6.21 16 30 H 0.03 0.99 7.92 -2.38 -0.02 0.97 16 31 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 32 H 0.01 0.28 7.77 -2.39 -0.02 0.26 16 33 H 0.02 0.88 7.21 -2.39 -0.02 0.86 16 34 H 0.08 2.59 8.12 -2.38 -0.02 2.58 16 35 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.09 2.26 8.08 -2.39 -0.02 2.24 16 37 H 0.09 2.65 7.02 -2.39 -0.02 2.63 16 38 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.25 0.15 8.06 -2.91 -0.02 0.13 16 41 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.15 2.48 7.02 -2.91 -0.02 2.46 16 43 H 0.10 2.22 4.69 -2.39 -0.01 2.20 16 44 H 0.09 1.81 8.14 -2.38 -0.02 1.80 16 45 H 0.08 2.49 7.62 -2.39 -0.02 2.47 16 46 H 0.05 1.78 8.13 -2.38 -0.02 1.77 16 Total: -1.00 -74.26 365.71 3.79 -70.47 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 1.00 Total: 13.09 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 5.41 Total: 2.31 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -4.49 Total: -109.36 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.15 Total: -23.99 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.26 3.79 -70.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036720516.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.252 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds