Wall clock time and date at job start Sat Apr 11 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00226 * 2 1 4 4 H 1.48492 * 109.47315 * 240.00294 * 3 2 1 5 5 H 1.48504 * 109.46775 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47356 * 119.99792 * 3 2 1 7 7 C 1.38818 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99964 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00037 * 0.02562 * 7 2 1 10 10 C 1.48225 * 126.39978 * 359.92860 * 9 7 2 11 11 C 1.55288 * 107.01139 * 175.08056 * 10 9 7 12 12 C 1.53743 * 101.87746 * 337.56923 * 11 10 9 13 13 H 1.08998 * 111.30697 * 280.13959 * 12 11 10 14 14 C 1.52243 * 114.74731 * 152.74142 * 12 11 10 15 15 N 1.47717 * 106.36415 * 190.42426 * 14 12 11 16 16 C 1.34784 * 119.67761 * 232.08036 * 15 14 12 17 17 O 1.21567 * 120.00094 * 356.24208 * 16 15 14 18 18 C 1.47697 * 119.99501 * 176.24662 * 16 15 14 19 19 C 1.40104 * 120.02538 * 229.95081 * 18 16 15 20 20 C 1.36434 * 120.68892 * 179.72848 * 19 18 16 21 21 C 1.39155 * 120.27429 * 0.53268 * 20 19 18 22 22 O 1.34750 * 133.25699 * 179.75334 * 21 20 19 23 23 C 1.34447 * 110.95647 * 179.97438 * 22 21 20 24 24 C 1.33958 * 110.19805 * 359.97438 * 23 22 21 25 25 C 1.40680 * 119.53898 * 359.74799 * 21 20 19 26 26 C 1.39081 * 120.20902 * 359.97438 * 25 21 20 27 27 C 1.46595 * 120.63716 * 52.05786 * 15 14 12 28 28 C 1.53958 * 110.57434 * 312.17205 * 27 15 14 29 29 C 1.45462 * 126.40788 * 179.97438 * 9 7 2 30 30 H 1.09001 * 108.77483 * 94.00233 * 29 9 7 31 31 H 0.96994 * 119.99968 * 0.02562 * 1 2 3 32 32 H 1.09009 * 109.91198 * 55.75841 * 10 9 7 33 33 H 1.08991 * 109.95932 * 294.43670 * 10 9 7 34 34 H 1.09003 * 110.95875 * 219.41027 * 11 10 9 35 35 H 1.08998 * 110.95532 * 95.72263 * 11 10 9 36 36 H 1.09002 * 110.06460 * 309.62935 * 14 12 11 37 37 H 1.08994 * 110.06706 * 71.09894 * 14 12 11 38 38 H 1.08001 * 119.65378 * 359.97438 * 19 18 16 39 39 H 1.07998 * 119.86235 * 180.28305 * 20 19 18 40 40 H 1.08000 * 124.89882 * 180.02562 * 23 22 21 41 41 H 1.08001 * 126.91987 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.33375 * 180.02562 * 26 25 21 43 43 H 1.09002 * 109.25361 * 72.45434 * 27 15 14 44 44 H 1.08999 * 109.25674 * 191.92646 * 27 15 14 45 45 H 1.08997 * 109.88099 * 170.51369 * 28 27 15 46 46 H 1.08994 * 109.88208 * 291.59525 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1474 -2.5533 0.0015 11 6 -0.4340 -4.0742 -0.1263 12 6 0.8684 -4.5895 -0.7602 13 1 0.8852 -4.4070 -1.8346 14 6 1.2010 -6.0408 -0.4428 15 7 2.5825 -6.2642 -0.9154 16 6 2.8488 -7.3033 -1.7316 17 8 1.9686 -8.0905 -2.0205 18 6 4.2101 -7.4854 -2.2750 19 6 4.3950 -7.6905 -3.6485 20 6 5.6468 -7.8548 -4.1657 21 6 6.7596 -7.8316 -3.3305 22 8 8.0821 -7.9667 -3.5503 23 6 8.7732 -7.8671 -2.4013 24 6 7.9371 -7.6616 -1.3751 25 6 6.5856 -7.6321 -1.9488 26 6 5.3102 -7.4588 -1.4219 27 6 3.6666 -5.3665 -0.5058 28 6 3.2478 -3.8957 -0.6845 29 6 1.9078 -3.7211 0.0005 30 1 1.9822 -4.0714 1.0300 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5812 -2.0213 -0.8453 33 1 -0.5637 -2.1740 0.9346 34 1 -1.2855 -4.2567 -0.7818 35 1 -0.5953 -4.5241 0.8533 36 1 1.1412 -6.2117 0.6321 37 1 0.5130 -6.7051 -0.9656 38 1 3.5380 -7.7150 -4.3053 39 1 5.7743 -8.0075 -5.2272 40 1 9.8474 -7.9412 -2.3180 41 1 8.2034 -7.5423 -0.3352 42 1 5.1744 -7.3051 -0.3615 43 1 3.9063 -5.5472 0.5421 44 1 4.5479 -5.5653 -1.1156 45 1 3.9878 -3.2411 -0.2241 46 1 3.1546 -3.6631 -1.7452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036720517.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:43 Heat of formation + Delta-G solvation = 37.669738 kcal Electronic energy + Delta-G solvation = -29576.265080 eV Core-core repulsion = 25626.412128 eV Total energy + Delta-G solvation = -3949.852951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.74802 -40.48584 -38.59219 -37.42279 -35.43084 -33.17442 -32.78581 -31.58428 -31.15829 -29.68298 -29.39787 -28.02884 -25.28813 -24.40362 -23.35326 -22.64040 -22.31779 -21.62439 -20.20633 -19.94321 -19.20224 -17.91168 -17.51085 -17.01417 -16.41133 -16.30047 -15.93532 -15.19657 -15.13279 -14.59304 -14.51744 -14.22435 -13.93484 -13.86558 -13.46515 -13.32664 -13.09637 -13.01644 -12.76370 -12.63238 -12.46948 -12.20402 -11.65686 -11.51775 -11.44820 -11.26124 -10.85912 -10.80422 -10.72831 -10.52414 -10.20142 -10.12677 -9.92006 -9.77432 -9.63747 -9.49566 -8.86372 -8.63346 -8.54399 -8.53807 -6.84914 -5.72556 -3.05784 0.59139 0.79302 2.06360 2.46010 2.63434 2.98362 3.38927 3.43272 3.44693 3.45382 4.08703 4.30148 4.41691 4.48227 4.70667 4.87124 5.00364 5.01226 5.04990 5.08320 5.24590 5.25732 5.32835 5.50940 5.53739 5.55998 5.60319 5.77638 5.80851 5.84970 5.88407 6.01050 6.03775 6.04545 6.14453 6.17053 6.21770 6.22082 6.34915 6.47670 6.60468 6.62723 6.80282 6.81682 7.05354 7.42384 7.53981 7.60448 7.79762 8.14585 8.23291 9.18179 9.81836 10.50019 11.39935 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013509 B = 0.003043 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.240887 B = 9197.819289 C =10641.796881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.080 0.920 14 C 0.127 3.873 15 N -0.598 5.598 16 C 0.560 3.440 17 O -0.541 6.541 18 C -0.136 4.136 19 C -0.045 4.045 20 C -0.109 4.109 21 C 0.067 3.933 22 O -0.194 6.194 23 C 0.005 3.995 24 C -0.203 4.203 25 C -0.139 4.139 26 C -0.036 4.036 27 C 0.101 3.899 28 C -0.129 4.129 29 C 0.168 3.832 30 H 0.020 0.980 31 H 0.253 0.747 32 H 0.055 0.945 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.209 0.791 41 H 0.161 0.839 42 H 0.137 0.863 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.809 -16.821 -3.701 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.145 4.145 13 H 0.098 0.902 14 C 0.005 3.995 15 N -0.329 5.329 16 C 0.348 3.652 17 O -0.419 6.419 18 C -0.139 4.139 19 C -0.064 4.064 20 C -0.127 4.127 21 C 0.019 3.981 22 O -0.096 6.096 23 C -0.060 4.060 24 C -0.222 4.222 25 C -0.140 4.140 26 C -0.055 4.055 27 C -0.022 4.022 28 C -0.168 4.168 29 C 0.060 3.940 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.226 0.774 41 H 0.178 0.822 42 H 0.155 0.845 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.376 -16.993 -4.075 22.006 hybrid contribution 0.616 1.099 0.281 1.291 sum 13.992 -15.893 -3.794 21.512 Atomic orbital electron populations 1.69924 1.04890 1.25165 1.56909 1.24789 0.95670 0.97616 1.02311 0.86237 0.78496 0.83400 0.77856 1.21216 1.21619 1.21198 1.18944 0.90312 0.82340 1.43892 0.90458 1.44220 1.01654 0.99448 1.86633 1.21542 0.83910 0.88280 1.00962 1.22719 0.95743 0.99682 0.99334 1.22634 0.97914 0.93221 1.00684 0.90194 1.21661 0.81268 0.97231 0.99332 1.48251 1.10083 1.27167 1.47444 1.18227 0.87456 0.81170 0.78376 1.90775 1.47285 1.43835 1.59988 1.19778 0.93212 1.06276 0.94629 1.20624 0.96543 0.95497 0.93757 1.19578 0.88277 1.05262 0.99625 1.19830 0.82892 1.01065 0.94312 1.84003 1.16414 1.74988 1.34148 1.23976 0.97958 1.01799 0.82267 1.22550 0.90363 1.08686 1.00604 1.19842 0.94197 1.06743 0.93256 1.20733 0.89303 0.95480 0.99954 1.22114 0.89401 0.90534 1.00124 1.21881 0.99410 0.93412 1.02088 1.20626 0.91077 0.87243 0.95101 0.96263 0.93697 0.92719 0.94348 0.92026 0.92313 0.91154 0.89120 0.83931 0.84403 0.77450 0.82154 0.84534 0.91519 0.89510 0.90512 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.77 10.44 55.49 0.58 -26.19 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.10 9.88 -15.06 -0.15 -6.25 16 8 H 0.08 1.99 7.21 -52.49 -0.38 1.61 16 9 N -0.60 -14.65 3.35 -163.07 -0.55 -15.20 16 10 C 0.18 4.22 5.45 -1.88 -0.01 4.21 16 11 C -0.14 -2.49 6.53 -25.13 -0.16 -2.65 16 12 C -0.12 -2.18 2.86 -89.38 -0.26 -2.44 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C 0.13 1.92 5.94 -3.76 -0.02 1.90 16 15 N -0.60 -8.66 3.00 -173.66 -0.52 -9.18 16 16 C 0.56 8.39 7.21 -12.39 -0.09 8.30 16 17 O -0.54 -9.66 16.41 5.31 0.09 -9.57 16 18 C -0.14 -1.72 4.93 -104.96 -0.52 -2.23 16 19 C -0.05 -0.52 9.64 -39.53 -0.38 -0.90 16 20 C -0.11 -1.11 9.99 -39.89 -0.40 -1.51 16 21 C 0.07 0.73 7.42 -38.32 -0.28 0.45 16 22 O -0.19 -1.94 10.57 4.08 0.04 -1.90 16 23 C 0.00 0.03 11.95 29.23 0.35 0.38 16 24 C -0.20 -1.66 11.14 -37.60 -0.42 -2.08 16 25 C -0.14 -1.50 6.39 -105.18 -0.67 -2.17 16 26 C -0.04 -0.40 7.42 -38.90 -0.29 -0.69 16 27 C 0.10 1.34 5.06 -3.49 -0.02 1.32 16 28 C -0.13 -2.15 5.48 -26.99 -0.15 -2.30 16 29 C 0.17 3.29 2.55 -68.00 -0.17 3.11 16 30 H 0.02 0.40 7.94 -51.93 -0.41 -0.02 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.05 1.45 7.21 -51.92 -0.37 1.08 16 33 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 36 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 37 H 0.09 1.40 7.02 -51.93 -0.36 1.04 16 38 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 39 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 40 H 0.21 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.14 1.32 7.03 -52.49 -0.37 0.95 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 1.03 4.68 -51.93 -0.24 0.79 16 45 H 0.08 1.29 7.62 -51.93 -0.40 0.90 16 46 H 0.07 1.23 8.13 -51.93 -0.42 0.80 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -32.85 365.78 -9.91 -42.76 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.30 Total: 0.86 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -3.74 Total: -3.85 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.49 Total: -50.57 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.13 Total: -11.47 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.85 -9.91 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036720517.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.429 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds