Wall clock time and date at job start Sat Apr 11 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86792 * 120.00341 * 2 1 4 4 H 1.48503 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47171 * 300.00035 * 3 2 1 6 6 H 1.48499 * 109.47239 * 59.99946 * 3 2 1 7 7 C 1.38816 * 119.99526 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99814 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.47780 * 125.96225 * 359.96884 * 9 7 2 11 11 C 1.55100 * 104.91247 * 201.61125 * 10 9 7 12 12 C 1.56120 * 101.08292 * 322.93806 * 11 10 9 13 13 H 1.09006 * 112.18531 * 157.73162 * 12 11 10 14 14 C 1.53610 * 106.54879 * 281.23707 * 12 11 10 15 15 N 1.46689 * 108.85561 * 160.21564 * 14 12 11 16 16 C 1.34776 * 120.97735 * 121.14771 * 15 14 12 17 17 O 1.21576 * 119.99925 * 3.52522 * 16 15 14 18 18 C 1.47699 * 120.00213 * 183.51802 * 16 15 14 19 19 C 1.40103 * 120.02450 * 129.42556 * 18 16 15 20 20 C 1.36432 * 120.68720 * 180.02562 * 19 18 16 21 21 C 1.39153 * 120.27641 * 0.04115 * 20 19 18 22 22 O 1.34746 * 133.26197 * 179.97438 * 21 20 19 23 23 C 1.34435 * 110.96088 * 179.97438 * 22 21 20 24 24 C 1.33955 * 110.20096 * 0.02562 * 23 22 21 25 25 C 1.40678 * 119.53941 * 359.97438 * 21 20 19 26 26 C 1.39086 * 120.20809 * 359.76705 * 25 21 20 27 27 C 1.46535 * 118.04601 * 300.88104 * 15 14 12 28 28 C 1.51785 * 110.13548 * 54.04209 * 27 15 14 29 29 C 1.46248 * 125.96094 * 180.02562 * 9 7 2 30 30 H 1.09000 * 105.49945 * 71.45489 * 29 9 7 31 31 H 0.97000 * 119.99454 * 359.97438 * 1 2 3 32 32 H 1.08996 * 110.34826 * 320.46763 * 10 9 7 33 33 H 1.08994 * 110.35206 * 82.64397 * 10 9 7 34 34 H 1.09004 * 111.09838 * 80.89066 * 11 10 9 35 35 H 1.08997 * 111.09684 * 204.98706 * 11 10 9 36 36 H 1.08998 * 109.67941 * 40.39029 * 14 12 11 37 37 H 1.09000 * 109.63980 * 280.01621 * 14 12 11 38 38 H 1.08002 * 119.65561 * 0.02562 * 19 18 16 39 39 H 1.08007 * 119.85740 * 180.02562 * 20 19 18 40 40 H 1.08000 * 124.89997 * 179.97438 * 23 22 21 41 41 H 1.08001 * 126.92841 * 180.02562 * 24 23 22 42 42 H 1.07996 * 120.33094 * 180.28688 * 26 25 21 43 43 H 1.09000 * 109.35860 * 174.24505 * 27 15 14 44 44 H 1.08993 * 109.35619 * 293.83763 * 27 15 14 45 45 H 1.08998 * 108.36151 * 79.84991 * 28 27 15 46 46 H 1.08999 * 108.35824 * 196.94804 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5415 0.0006 11 6 -0.3962 -3.9691 0.5522 12 6 0.7951 -4.7515 -0.0850 13 1 1.0309 -5.6622 0.4656 14 6 0.4042 -5.0316 -1.5439 15 7 1.6190 -5.3240 -2.3124 16 6 1.7657 -6.4980 -2.9579 17 8 0.8582 -7.3070 -2.9619 18 6 3.0288 -6.8017 -3.6606 19 6 3.6866 -8.0164 -3.4267 20 6 4.8544 -8.3106 -4.0680 21 6 5.4096 -7.4037 -4.9656 22 8 6.5222 -7.4200 -5.7255 23 6 6.6313 -6.2883 -6.4428 24 6 5.5966 -5.4769 -6.1870 25 6 4.7581 -6.1806 -5.2081 26 6 3.5649 -5.8825 -4.5587 27 6 2.6658 -4.2998 -2.3625 28 6 3.0598 -3.8862 -0.9563 29 6 1.9211 -3.7238 -0.0005 30 1 2.3449 -3.8538 0.9953 31 1 -0.4849 0.8401 0.0004 32 1 -0.6026 -1.7972 0.6519 33 1 -0.5358 -2.4502 -1.0125 34 1 -0.3388 -3.9851 1.6406 35 1 -1.3527 -4.3604 0.2057 36 1 -0.0920 -4.1574 -1.9653 37 1 -0.2681 -5.8886 -1.5850 38 1 3.2649 -8.7273 -2.7316 39 1 5.3500 -9.2512 -3.8780 40 1 7.4374 -6.0651 -7.1261 41 1 5.4153 -4.5020 -6.6149 42 1 3.0607 -4.9462 -4.7469 43 1 3.5382 -4.6998 -2.8793 44 1 2.2946 -3.4301 -2.9044 45 1 3.7400 -4.6375 -0.5552 46 1 3.5967 -2.9394 -1.0147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036720518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:46 Heat of formation + Delta-G solvation = 39.042554 kcal Electronic energy + Delta-G solvation = -29898.945585 eV Core-core repulsion = 25949.152164 eV Total energy + Delta-G solvation = -3949.793421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.70117 -40.38623 -38.59184 -37.35435 -35.23527 -33.12561 -32.85917 -31.79592 -31.02192 -29.63506 -29.24015 -27.66896 -25.68523 -24.39751 -23.63364 -22.68156 -22.54447 -21.58673 -20.19804 -19.95533 -18.39734 -17.85730 -17.40219 -16.91073 -16.39042 -16.30241 -15.96731 -15.32502 -15.04953 -14.55273 -14.43900 -14.26932 -13.95441 -13.88155 -13.40884 -13.19200 -12.99649 -12.89363 -12.85160 -12.49116 -12.31391 -12.13060 -11.73251 -11.40695 -11.24299 -11.20693 -11.02057 -10.79837 -10.56816 -10.47397 -10.16688 -10.13094 -9.95288 -9.75506 -9.66595 -9.53984 -8.81826 -8.66575 -8.49648 -8.28117 -6.83836 -5.70974 -3.09865 0.64484 0.84422 2.11109 2.50181 2.72111 3.12694 3.35913 3.41552 3.44065 3.51633 4.15756 4.35877 4.44150 4.51425 4.75744 4.94380 5.06337 5.07898 5.13939 5.23269 5.27270 5.32339 5.44121 5.50889 5.53557 5.58091 5.69521 5.83129 5.85276 5.89735 5.93223 6.07045 6.09760 6.11259 6.20430 6.25984 6.29950 6.33286 6.42367 6.57997 6.65011 6.71964 6.85242 6.91528 6.96937 7.48079 7.59645 7.62012 7.82461 8.25517 8.30457 9.17434 9.79845 10.46498 11.35111 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.003332 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.714876 B = 8402.124814 C = 9979.618709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.156 3.844 11 C -0.143 4.143 12 C -0.107 4.107 13 H 0.077 0.923 14 C 0.121 3.879 15 N -0.593 5.593 16 C 0.561 3.439 17 O -0.544 6.544 18 C -0.134 4.134 19 C -0.046 4.046 20 C -0.110 4.110 21 C 0.066 3.934 22 O -0.195 6.195 23 C 0.003 3.997 24 C -0.202 4.202 25 C -0.139 4.139 26 C -0.035 4.035 27 C 0.107 3.893 28 C -0.135 4.135 29 C 0.172 3.828 30 H 0.009 0.991 31 H 0.251 0.749 32 H 0.098 0.902 33 H 0.014 0.986 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.209 0.791 41 H 0.161 0.839 42 H 0.138 0.862 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.050 0.950 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.108 -13.565 -9.839 19.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.741 3.259 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.318 5.318 10 C 0.032 3.968 11 C -0.182 4.182 12 C -0.126 4.126 13 H 0.095 0.905 14 C -0.001 4.001 15 N -0.324 5.324 16 C 0.349 3.651 17 O -0.423 6.423 18 C -0.137 4.137 19 C -0.065 4.065 20 C -0.129 4.129 21 C 0.018 3.982 22 O -0.096 6.096 23 C -0.062 4.062 24 C -0.221 4.221 25 C -0.140 4.140 26 C -0.054 4.054 27 C -0.016 4.016 28 C -0.175 4.175 29 C 0.064 3.936 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.225 0.775 41 H 0.179 0.821 42 H 0.156 0.844 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.770 -13.948 -9.817 19.656 hybrid contribution 0.574 1.257 -0.141 1.389 sum 10.344 -12.690 -9.958 19.162 Atomic orbital electron populations 1.69860 1.04865 1.24712 1.57351 1.24758 0.95667 0.97586 1.02455 0.86061 0.78663 0.83872 0.77262 1.20568 1.21827 1.21776 1.19016 0.90454 0.82282 1.43150 0.90429 1.44497 1.01803 0.99262 1.86278 1.21913 0.84655 0.91703 0.98556 1.23294 0.95994 0.98970 0.99932 1.22421 0.97444 0.97713 0.95064 0.90481 1.21831 0.85827 1.01846 0.90601 1.47925 1.19733 1.15506 1.49208 1.18144 0.86668 0.81435 0.78852 1.90769 1.41676 1.47755 1.62072 1.19776 0.96941 0.96092 1.00877 1.20604 0.92904 0.95140 0.97859 1.19556 0.96766 0.99279 0.97263 1.19822 0.86730 0.96365 0.95302 1.83990 1.39012 1.38652 1.47959 1.23960 1.00715 0.84234 0.97240 1.22572 0.95876 1.02059 1.01559 1.19849 0.97550 0.95455 1.01121 1.20758 0.92828 0.98340 0.93444 1.21619 0.90439 0.90687 0.98819 1.21230 0.99649 1.01844 0.94735 1.19430 0.91620 0.86677 0.95834 0.97385 0.93797 0.88388 0.96762 0.91898 0.91991 0.90215 0.89590 0.84001 0.84479 0.77462 0.82128 0.84449 0.89972 0.90933 0.93152 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.94 10.18 55.49 0.56 -25.38 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.22 -5.78 9.59 -15.06 -0.14 -5.93 16 8 H 0.08 1.97 7.02 -52.49 -0.37 1.60 16 9 N -0.59 -14.20 3.32 -165.67 -0.55 -14.75 16 10 C 0.16 3.62 5.35 -2.23 -0.01 3.61 16 11 C -0.14 -2.63 6.47 -23.95 -0.15 -2.79 16 12 C -0.11 -1.87 3.70 -88.79 -0.33 -2.20 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 14 C 0.12 2.05 5.56 -3.62 -0.02 2.03 16 15 N -0.59 -9.52 2.94 -175.04 -0.51 -10.03 16 16 C 0.56 8.99 7.23 -12.40 -0.09 8.90 16 17 O -0.54 -10.21 16.48 5.30 0.09 -10.12 16 18 C -0.13 -1.80 5.02 -104.96 -0.53 -2.32 16 19 C -0.05 -0.54 9.65 -39.53 -0.38 -0.92 16 20 C -0.11 -1.15 9.99 -39.89 -0.40 -1.55 16 21 C 0.07 0.75 7.42 -38.32 -0.28 0.47 16 22 O -0.20 -2.03 10.57 4.12 0.04 -1.98 16 23 C 0.00 0.02 11.95 29.23 0.35 0.37 16 24 C -0.20 -1.83 11.15 -37.61 -0.42 -2.25 16 25 C -0.14 -1.61 6.39 -105.18 -0.67 -2.28 16 26 C -0.04 -0.43 7.42 -38.89 -0.29 -0.72 16 27 C 0.11 1.64 5.45 -4.64 -0.03 1.61 16 28 C -0.13 -2.32 5.62 -29.05 -0.16 -2.48 16 29 C 0.17 3.41 2.64 -69.93 -0.18 3.23 16 30 H 0.01 0.18 8.07 -51.93 -0.42 -0.24 16 31 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.10 2.59 6.09 -51.93 -0.32 2.27 16 33 H 0.01 0.35 7.10 -51.93 -0.37 -0.01 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.01 7.98 -51.93 -0.41 0.60 16 36 H 0.08 1.47 6.50 -51.93 -0.34 1.13 16 37 H 0.09 1.45 7.01 -51.93 -0.36 1.08 16 38 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 39 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.21 0.69 8.06 -52.49 -0.42 0.27 16 41 H 0.16 1.11 8.06 -52.49 -0.42 0.69 16 42 H 0.14 1.59 7.09 -52.49 -0.37 1.21 16 43 H 0.08 1.10 4.54 -51.93 -0.24 0.86 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.08 1.53 6.64 -51.93 -0.34 1.18 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -31.56 361.57 -9.84 -41.40 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.06 Total: 2.62 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -3.84 Total: -3.54 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.50 Total: -50.16 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.13 Total: -12.11 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.56 -9.84 -41.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036720518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.445 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds