Wall clock time and date at job start Sat Apr 11 2020 06:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86792 * 120.00341 * 2 1 4 4 H 1.48503 * 109.47208 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47171 * 300.00035 * 3 2 1 6 6 H 1.48499 * 109.47239 * 59.99946 * 3 2 1 7 7 C 1.38816 * 119.99526 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99814 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.47780 * 125.96225 * 359.96884 * 9 7 2 11 11 C 1.55100 * 104.91247 * 201.61125 * 10 9 7 12 12 C 1.56120 * 101.08292 * 322.93806 * 11 10 9 13 13 H 1.09006 * 112.18531 * 157.73162 * 12 11 10 14 14 C 1.53610 * 106.54879 * 281.23707 * 12 11 10 15 15 N 1.46689 * 108.85561 * 160.21564 * 14 12 11 16 16 C 1.34776 * 120.97735 * 121.14771 * 15 14 12 17 17 O 1.21576 * 119.99925 * 3.52522 * 16 15 14 18 18 C 1.47699 * 120.00213 * 183.51802 * 16 15 14 19 19 C 1.40103 * 120.02450 * 129.42556 * 18 16 15 20 20 C 1.36432 * 120.68720 * 180.02562 * 19 18 16 21 21 C 1.39153 * 120.27641 * 0.04115 * 20 19 18 22 22 O 1.34746 * 133.26197 * 179.97438 * 21 20 19 23 23 C 1.34435 * 110.96088 * 179.97438 * 22 21 20 24 24 C 1.33955 * 110.20096 * 0.02562 * 23 22 21 25 25 C 1.40678 * 119.53941 * 359.97438 * 21 20 19 26 26 C 1.39086 * 120.20809 * 359.76705 * 25 21 20 27 27 C 1.46535 * 118.04601 * 300.88104 * 15 14 12 28 28 C 1.51785 * 110.13548 * 54.04209 * 27 15 14 29 29 C 1.46248 * 125.96094 * 180.02562 * 9 7 2 30 30 H 1.09000 * 105.49945 * 71.45489 * 29 9 7 31 31 H 0.97000 * 119.99454 * 359.97438 * 1 2 3 32 32 H 1.08996 * 110.34826 * 320.46763 * 10 9 7 33 33 H 1.08994 * 110.35206 * 82.64397 * 10 9 7 34 34 H 1.09004 * 111.09838 * 80.89066 * 11 10 9 35 35 H 1.08997 * 111.09684 * 204.98706 * 11 10 9 36 36 H 1.08998 * 109.67941 * 40.39029 * 14 12 11 37 37 H 1.09000 * 109.63980 * 280.01621 * 14 12 11 38 38 H 1.08002 * 119.65561 * 0.02562 * 19 18 16 39 39 H 1.08007 * 119.85740 * 180.02562 * 20 19 18 40 40 H 1.08000 * 124.89997 * 179.97438 * 23 22 21 41 41 H 1.08001 * 126.92841 * 180.02562 * 24 23 22 42 42 H 1.07996 * 120.33094 * 180.28688 * 26 25 21 43 43 H 1.09000 * 109.35860 * 174.24505 * 27 15 14 44 44 H 1.08993 * 109.35619 * 293.83763 * 27 15 14 45 45 H 1.08998 * 108.36151 * 79.84991 * 28 27 15 46 46 H 1.08999 * 108.35824 * 196.94804 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5415 0.0006 11 6 -0.3962 -3.9691 0.5522 12 6 0.7951 -4.7515 -0.0850 13 1 1.0309 -5.6622 0.4656 14 6 0.4042 -5.0316 -1.5439 15 7 1.6190 -5.3240 -2.3124 16 6 1.7657 -6.4980 -2.9579 17 8 0.8582 -7.3070 -2.9619 18 6 3.0288 -6.8017 -3.6606 19 6 3.6866 -8.0164 -3.4267 20 6 4.8544 -8.3106 -4.0680 21 6 5.4096 -7.4037 -4.9656 22 8 6.5222 -7.4200 -5.7255 23 6 6.6313 -6.2883 -6.4428 24 6 5.5966 -5.4769 -6.1870 25 6 4.7581 -6.1806 -5.2081 26 6 3.5649 -5.8825 -4.5587 27 6 2.6658 -4.2998 -2.3625 28 6 3.0598 -3.8862 -0.9563 29 6 1.9211 -3.7238 -0.0005 30 1 2.3449 -3.8538 0.9953 31 1 -0.4849 0.8401 0.0004 32 1 -0.6026 -1.7972 0.6519 33 1 -0.5358 -2.4502 -1.0125 34 1 -0.3388 -3.9851 1.6406 35 1 -1.3527 -4.3604 0.2057 36 1 -0.0920 -4.1574 -1.9653 37 1 -0.2681 -5.8886 -1.5850 38 1 3.2649 -8.7273 -2.7316 39 1 5.3500 -9.2512 -3.8780 40 1 7.4374 -6.0651 -7.1261 41 1 5.4153 -4.5020 -6.6149 42 1 3.0607 -4.9462 -4.7469 43 1 3.5382 -4.6998 -2.8793 44 1 2.2946 -3.4301 -2.9044 45 1 3.7400 -4.6375 -0.5552 46 1 3.5967 -2.9394 -1.0147 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036720518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:45 Heat of formation + Delta-G solvation = 21.627860 kcal Electronic energy + Delta-G solvation = -29899.700743 eV Core-core repulsion = 25949.152164 eV Total energy + Delta-G solvation = -3950.548579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.45695 -41.68832 -39.98706 -38.39986 -36.72319 -34.65251 -33.85524 -33.36089 -32.09798 -30.92775 -30.39478 -29.21630 -27.13858 -26.06210 -24.70602 -24.03538 -23.53331 -22.32886 -21.92992 -21.22051 -19.83354 -18.85226 -18.58233 -18.03740 -17.79136 -17.27670 -17.10084 -16.91468 -16.43412 -16.03529 -15.70380 -15.55351 -15.30328 -14.93696 -14.62825 -14.28183 -14.23296 -14.13331 -13.97200 -13.67306 -13.60753 -13.40400 -13.28353 -13.05303 -12.87144 -12.66301 -12.52652 -12.17328 -12.06478 -11.92639 -11.69525 -11.60198 -11.42685 -11.29675 -11.22869 -11.00055 -10.68015 -9.78498 -9.59727 -9.26314 -8.79548 -7.75112 -5.15284 -0.20236 -0.02630 1.42110 1.48162 1.48835 1.53838 1.58388 1.79619 1.91503 2.51548 2.58173 3.26975 3.36493 3.50007 3.62927 3.66349 3.76759 3.81890 3.98231 4.01426 4.12756 4.15164 4.21792 4.28955 4.38691 4.41969 4.49121 4.58406 4.61390 4.72558 4.76899 4.84426 4.87837 4.94315 5.02973 5.08029 5.11092 5.13407 5.20648 5.32348 5.39264 5.42037 5.46114 5.49289 5.55090 5.67950 5.85524 6.10149 6.32617 6.33938 6.98567 7.14621 7.83519 8.49719 9.29768 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.003332 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.714876 B = 8402.124814 C = 9979.618709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.296 1.296 7 C -0.223 4.223 8 H 0.084 0.916 9 N -0.610 5.610 10 C 0.161 3.839 11 C -0.129 4.129 12 C -0.095 4.095 13 H 0.100 0.900 14 C 0.127 3.873 15 N -0.594 5.594 16 C 0.565 3.435 17 O -0.574 6.574 18 C -0.150 4.150 19 C -0.055 4.055 20 C -0.101 4.101 21 C 0.051 3.949 22 O -0.202 6.202 23 C 0.019 3.981 24 C -0.222 4.222 25 C -0.152 4.152 26 C -0.043 4.043 27 C 0.117 3.883 28 C -0.130 4.130 29 C 0.168 3.832 30 H -0.002 1.002 31 H 0.244 0.756 32 H 0.062 0.938 33 H -0.009 1.009 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.151 0.849 39 H 0.165 0.835 40 H 0.254 0.746 41 H 0.179 0.821 42 H 0.138 0.862 43 H 0.107 0.893 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.778 -15.121 -10.902 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.352 4.352 8 H 0.102 0.898 9 N -0.336 5.336 10 C 0.036 3.964 11 C -0.168 4.168 12 C -0.115 4.115 13 H 0.118 0.882 14 C 0.004 3.996 15 N -0.324 5.324 16 C 0.355 3.645 17 O -0.455 6.455 18 C -0.153 4.153 19 C -0.073 4.073 20 C -0.119 4.119 21 C 0.003 3.997 22 O -0.103 6.103 23 C -0.044 4.044 24 C -0.241 4.241 25 C -0.153 4.153 26 C -0.061 4.061 27 C -0.006 4.006 28 C -0.170 4.170 29 C 0.061 3.939 30 H 0.016 0.984 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.009 0.991 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.168 0.832 39 H 0.182 0.818 40 H 0.269 0.731 41 H 0.196 0.804 42 H 0.156 0.844 43 H 0.125 0.875 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.477 -15.528 -10.882 22.698 hybrid contribution -0.171 1.694 0.123 1.707 sum 12.306 -13.834 -10.759 21.414 Atomic orbital electron populations 1.70100 1.06179 1.24711 1.58974 1.25522 0.96458 1.00629 1.03264 0.85089 0.78317 0.79993 0.76444 1.18924 1.22298 1.22377 1.19364 0.90981 0.83311 1.41569 0.89826 1.44734 1.02324 1.00358 1.86142 1.21667 0.84342 0.93733 0.96642 1.23155 0.97692 0.95930 1.00038 1.22388 0.95889 0.97679 0.95519 0.88230 1.21658 0.86411 1.01172 0.90322 1.47920 1.19420 1.15851 1.49174 1.18513 0.87187 0.80637 0.78179 1.90744 1.42967 1.48587 1.63205 1.19645 0.96293 0.97467 1.01864 1.20721 0.93412 0.94673 0.98525 1.19814 0.96036 0.99995 0.96048 1.20085 0.87233 0.96570 0.95775 1.84014 1.38479 1.39783 1.47988 1.24854 1.00958 0.82576 0.96039 1.22884 0.96098 1.03288 1.01792 1.20158 0.97414 0.96197 1.01538 1.20749 0.93360 0.98295 0.93721 1.21547 0.91083 0.90192 0.97733 1.21131 0.98676 1.01934 0.95261 1.19645 0.92890 0.85336 0.96048 0.98382 0.94622 0.92003 0.99097 0.91469 0.89673 0.92145 0.89085 0.83161 0.81779 0.73055 0.80395 0.84439 0.87518 0.92417 0.90933 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.63 10.18 21.65 0.22 -55.41 16 2 C -0.07 -3.65 5.49 84.86 0.47 -3.18 16 3 Si 0.97 44.63 29.55 68.60 2.03 46.66 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 7 C -0.22 -11.87 9.59 84.03 0.81 -11.06 16 8 H 0.08 4.24 7.02 -2.91 -0.02 4.22 16 9 N -0.61 -29.78 3.32 -678.05 -2.25 -32.03 16 10 C 0.16 7.72 5.35 86.85 0.46 8.18 16 11 C -0.13 -4.72 6.47 32.40 0.21 -4.51 16 12 C -0.10 -3.24 3.70 -9.61 -0.04 -3.27 16 13 H 0.10 3.02 8.14 -2.38 -0.02 3.00 16 14 C 0.13 4.26 5.56 86.55 0.48 4.75 16 15 N -0.59 -18.69 2.94 -825.96 -2.43 -21.11 16 16 C 0.57 17.72 7.23 86.74 0.63 18.35 16 17 O -0.57 -21.29 16.48 -3.95 -0.07 -21.36 16 18 C -0.15 -3.86 5.02 -20.08 -0.10 -3.96 16 19 C -0.05 -1.18 9.65 22.30 0.22 -0.97 16 20 C -0.10 -1.86 9.99 22.07 0.22 -1.64 16 21 C 0.05 1.05 7.42 23.09 0.17 1.23 16 22 O -0.20 -3.57 10.57 -8.16 -0.09 -3.65 16 23 C 0.02 0.23 11.95 66.84 0.80 1.03 16 24 C -0.22 -3.44 11.15 23.55 0.26 -3.18 16 25 C -0.15 -3.25 6.39 -20.22 -0.13 -3.38 16 26 C -0.04 -1.00 7.42 22.71 0.17 -0.83 16 27 C 0.12 3.50 5.45 85.97 0.47 3.97 16 28 C -0.13 -4.36 5.62 29.09 0.16 -4.20 16 29 C 0.17 6.56 2.64 43.83 0.12 6.68 16 30 H 0.00 -0.06 8.07 -2.39 -0.02 -0.08 16 31 H 0.24 14.01 8.31 -92.71 -0.77 13.24 16 32 H 0.06 3.43 6.09 -2.39 -0.01 3.41 16 33 H -0.01 -0.46 7.10 -2.39 -0.02 -0.48 16 34 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 35 H 0.08 2.71 7.98 -2.39 -0.02 2.69 16 36 H 0.06 2.28 6.50 -2.39 -0.02 2.26 16 37 H 0.09 3.00 7.01 -2.39 -0.02 2.98 16 38 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 40 H 0.25 0.42 8.06 -2.91 -0.02 0.39 16 41 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.14 3.10 7.09 -2.91 -0.02 3.08 16 43 H 0.11 2.71 4.54 -2.39 -0.01 2.70 16 44 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.07 2.52 6.64 -2.39 -0.02 2.50 16 Total: -1.00 -70.23 361.57 3.80 -66.42 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 1.01 Total: 16.48 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.37 Total: 4.00 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -4.45 Total: -108.55 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.15 Total: -25.01 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.23 3.80 -66.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036720518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.052 kcal (2) G-P(sol) polarization free energy of solvation -70.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds