Wall clock time and date at job start Sat Apr 11 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00064 * 2 1 4 4 H 1.48503 * 109.47444 * 240.00166 * 3 2 1 5 5 H 1.48507 * 109.47086 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47402 * 119.99820 * 3 2 1 7 7 C 1.38812 * 120.00438 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00471 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99713 * 0.02562 * 7 2 1 10 10 C 1.47556 * 125.67386 * 0.04297 * 9 7 2 11 11 C 1.55183 * 105.00774 * 203.82891 * 10 9 7 12 12 C 1.53663 * 101.41644 * 324.50660 * 11 10 9 13 13 C 1.53658 * 111.41387 * 155.02740 * 12 11 10 14 14 C 1.55435 * 101.31363 * 87.06593 * 13 12 11 15 15 N 1.47568 * 104.87893 * 35.82477 * 14 13 12 16 16 C 1.34771 * 125.67267 * 156.03503 * 15 14 13 17 17 O 1.21569 * 120.00148 * 185.44055 * 16 15 14 18 18 C 1.47703 * 119.99779 * 5.44798 * 16 15 14 19 19 C 1.40115 * 120.02148 * 204.55514 * 18 16 15 20 20 C 1.36428 * 120.68176 * 180.02562 * 19 18 16 21 21 C 1.39161 * 120.28174 * 359.97438 * 20 19 18 22 22 O 1.34737 * 133.25575 * 180.02562 * 21 20 19 23 23 C 1.34453 * 110.95342 * 179.29077 * 22 21 20 24 24 C 1.33952 * 110.19728 * 0.64502 * 23 22 21 25 25 C 1.40679 * 119.53741 * 359.74804 * 21 20 19 26 26 C 1.39090 * 120.20383 * 0.50949 * 25 21 20 27 27 C 1.47409 * 108.65170 * 335.76985 * 15 14 13 28 28 C 1.47405 * 125.67098 * 180.02562 * 9 7 2 29 29 H 0.96995 * 120.00189 * 0.02562 * 1 2 3 30 30 H 1.09001 * 110.33433 * 322.70865 * 10 9 7 31 31 H 1.09004 * 110.33763 * 84.84307 * 10 9 7 32 32 H 1.09003 * 111.03684 * 206.47576 * 11 10 9 33 33 H 1.08997 * 111.03814 * 82.53789 * 11 10 9 34 34 H 1.09000 * 111.03431 * 205.29500 * 13 12 11 35 35 H 1.08997 * 111.03366 * 329.18271 * 13 12 11 36 36 H 1.09005 * 110.48422 * 276.94076 * 14 13 12 37 37 H 1.08992 * 110.30382 * 154.62244 * 14 13 12 38 38 H 1.07995 * 119.65710 * 359.97438 * 19 18 16 39 39 H 1.08006 * 119.85905 * 179.97438 * 20 19 18 40 40 H 1.07998 * 124.90468 * 180.12038 * 23 22 21 41 41 H 1.07997 * 126.92808 * 179.49952 * 24 23 22 42 42 H 1.08001 * 120.32446 * 179.77017 * 26 25 21 43 43 H 1.08996 * 109.97879 * 121.71816 * 27 15 14 44 44 H 1.09001 * 109.98262 * 242.98309 * 27 15 14 45 45 H 1.08995 * 109.98928 * 58.57431 * 28 9 7 46 46 H 1.08999 * 110.02094 * 297.28264 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1427 -2.5340 -0.0009 11 6 -0.4076 -3.9378 0.6052 12 6 0.7835 -4.7368 0.0540 13 6 1.1147 -5.9403 0.9501 14 6 0.1668 -7.0251 0.3664 15 7 0.1373 -6.7612 -1.0852 16 6 -0.1576 -7.6633 -2.0421 17 8 -0.0552 -7.3606 -3.2151 18 6 -0.6053 -9.0195 -1.6657 19 6 -0.4246 -10.0889 -2.5529 20 6 -0.8335 -11.3469 -2.2193 21 6 -1.4372 -11.5852 -0.9883 22 8 -1.9294 -12.6932 -0.4004 23 6 -2.4074 -12.4152 0.8251 24 6 -2.2641 -11.1105 1.0925 25 6 -1.6185 -10.5204 -0.0871 26 6 -1.2067 -9.2366 -0.4289 27 6 0.4779 -5.3454 -1.3140 28 6 1.9329 -3.7312 0.0016 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6007 -1.7619 0.6174 31 1 -0.5277 -2.4806 -1.0193 32 1 -1.3524 -4.3467 0.2470 33 1 -0.3856 -3.9042 1.6945 34 1 2.1600 -6.2308 0.8446 35 1 0.8724 -5.7307 1.9919 36 1 -0.8328 -6.9260 0.7897 37 1 0.5650 -8.0205 0.5625 38 1 0.0424 -9.9152 -3.5111 39 1 -0.6881 -12.1614 -2.9136 40 1 -2.8513 -13.1378 1.4938 41 1 -2.5625 -10.5963 1.9941 42 1 -1.3483 -8.4170 0.2601 43 1 1.3540 -5.2725 -1.9583 44 1 -0.3655 -4.8288 -1.7723 45 1 2.5724 -3.8503 0.8762 46 1 2.5151 -3.8782 -0.9081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041312812.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:51 Heat of formation + Delta-G solvation = 22.835752 kcal Electronic energy + Delta-G solvation = -29118.437814 eV Core-core repulsion = 25167.941613 eV Total energy + Delta-G solvation = -3950.496201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.45195 -41.72115 -40.06471 -38.35442 -37.29365 -34.60874 -33.83195 -32.53586 -31.55450 -30.71643 -30.36260 -29.69704 -27.47462 -26.14113 -24.78860 -23.66243 -23.48070 -22.30007 -22.17224 -20.84545 -20.24536 -18.94612 -18.68667 -18.10903 -17.78489 -17.20970 -17.02619 -16.85210 -16.58366 -16.11187 -15.63247 -15.46937 -15.16626 -14.82951 -14.67334 -14.30833 -14.11659 -14.09284 -13.75117 -13.65884 -13.55175 -13.44078 -13.27056 -13.13023 -12.88871 -12.82702 -12.64035 -12.45111 -12.05636 -12.01818 -11.80313 -11.52402 -11.45398 -11.26046 -11.16630 -11.10669 -10.72382 -9.90104 -9.63908 -9.26820 -8.87952 -7.76628 -5.20697 -0.27047 -0.05207 1.43729 1.46390 1.49656 1.55835 1.66688 1.77668 1.84775 2.50158 2.65820 3.22978 3.32767 3.43075 3.50289 3.63331 3.64659 3.73245 3.78619 3.99367 4.14342 4.21215 4.26878 4.27731 4.38779 4.40355 4.54318 4.61434 4.66346 4.71029 4.75362 4.84564 4.88482 4.92899 5.00470 5.03788 5.04848 5.11741 5.15574 5.26993 5.29213 5.35665 5.45480 5.47301 5.47633 5.64326 5.83277 6.10909 6.31719 6.40005 6.97299 7.11554 7.78915 8.42932 9.25117 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028278 B = 0.002271 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.925497 B =12326.428385 C =12815.433824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.979 3.021 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.238 4.238 8 H 0.080 0.920 9 N -0.626 5.626 10 C 0.154 3.846 11 C -0.111 4.111 12 C -0.070 4.070 13 C -0.108 4.108 14 C 0.095 3.905 15 N -0.609 5.609 16 C 0.570 3.430 17 O -0.586 6.586 18 C -0.158 4.158 19 C -0.052 4.052 20 C -0.108 4.108 21 C 0.054 3.946 22 O -0.204 6.204 23 C 0.013 3.987 24 C -0.213 4.213 25 C -0.154 4.154 26 C -0.037 4.037 27 C 0.134 3.866 28 C 0.147 3.853 29 H 0.246 0.754 30 H 0.073 0.927 31 H -0.024 1.024 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.253 0.747 41 H 0.187 0.813 42 H 0.161 0.839 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.044 0.956 46 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 -28.628 6.695 29.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.352 5.352 10 C 0.029 3.971 11 C -0.149 4.149 12 C -0.071 4.071 13 C -0.146 4.146 14 C -0.026 4.026 15 N -0.341 5.341 16 C 0.361 3.639 17 O -0.467 6.467 18 C -0.161 4.161 19 C -0.071 4.071 20 C -0.126 4.126 21 C 0.006 3.994 22 O -0.105 6.105 23 C -0.050 4.050 24 C -0.231 4.231 25 C -0.155 4.155 26 C -0.056 4.056 27 C 0.011 3.989 28 C 0.021 3.979 29 H 0.056 0.944 30 H 0.091 0.909 31 H -0.006 1.006 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.160 0.840 39 H 0.177 0.823 40 H 0.269 0.731 41 H 0.204 0.796 42 H 0.179 0.821 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -4.828 -28.559 5.905 29.560 hybrid contribution 0.383 1.709 -0.689 1.882 sum -4.445 -26.850 5.216 27.711 Atomic orbital electron populations 1.70048 1.06191 1.25037 1.58651 1.25623 0.96633 1.00966 1.02836 0.85136 0.77116 0.78815 0.78165 1.20868 1.22017 1.19906 1.19419 0.91014 0.83836 1.42464 0.90180 1.44934 1.02677 1.00847 1.86778 1.21774 0.83998 0.95280 0.96050 1.22732 0.96484 0.94911 1.00765 1.21377 0.96415 0.95243 0.94113 1.22761 1.00316 0.91547 0.99953 1.23050 1.01085 1.00527 0.77889 1.48604 1.67458 1.09691 1.08318 1.18299 0.76800 0.84742 0.84069 1.90763 1.55870 1.80480 1.19626 1.19597 1.06953 0.92448 0.97090 1.20742 0.96927 0.90437 0.99029 1.19761 1.01023 0.97915 0.93942 1.20116 0.98672 0.84958 0.95661 1.84023 1.63842 1.33699 1.28952 1.24904 0.98125 0.98198 0.83780 1.22913 1.05971 0.94539 0.99684 1.20229 1.04593 0.94025 0.96672 1.21353 0.93372 0.96417 0.94419 1.21626 0.99570 0.80482 0.97197 1.21277 0.94178 0.84224 0.98176 0.94391 0.90940 1.00593 0.90503 0.89814 0.89619 0.86967 0.88521 0.87944 0.83981 0.82258 0.73142 0.79594 0.82136 0.92967 0.93240 0.93773 0.96753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.16 10.09 21.65 0.22 -56.94 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 3 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.24 -13.46 10.28 84.03 0.86 -12.60 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 9 N -0.63 -32.24 3.41 -693.06 -2.36 -34.61 16 10 C 0.15 7.57 5.85 86.93 0.51 8.08 16 11 C -0.11 -3.81 5.85 31.57 0.18 -3.62 16 12 C -0.07 -2.22 0.61 -51.86 -0.03 -2.25 16 13 C -0.11 -2.26 5.94 31.65 0.19 -2.07 16 14 C 0.10 1.77 4.94 87.01 0.43 2.20 16 15 N -0.61 -16.94 3.34 -815.90 -2.73 -19.66 16 16 C 0.57 17.58 7.64 86.75 0.66 18.24 16 17 O -0.59 -23.14 16.92 -3.93 -0.07 -23.21 16 18 C -0.16 -3.78 5.68 -20.08 -0.11 -3.89 16 19 C -0.05 -1.14 9.51 22.30 0.21 -0.92 16 20 C -0.11 -1.92 9.99 22.07 0.22 -1.70 16 21 C 0.05 0.99 7.42 23.09 0.17 1.16 16 22 O -0.20 -3.15 10.57 -8.24 -0.09 -3.24 16 23 C 0.01 0.12 11.95 66.84 0.80 0.91 16 24 C -0.21 -2.31 11.14 23.55 0.26 -2.04 16 25 C -0.15 -2.68 6.39 -20.22 -0.13 -2.81 16 26 C -0.04 -0.70 8.12 22.71 0.18 -0.52 16 27 C 0.13 4.55 6.03 86.14 0.52 5.07 16 28 C 0.15 5.89 6.51 86.14 0.56 6.45 16 29 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 30 H 0.07 4.06 5.89 -2.39 -0.01 4.04 16 31 H -0.02 -1.31 8.14 -2.38 -0.02 -1.33 16 32 H 0.08 2.38 7.94 -2.39 -0.02 2.36 16 33 H 0.08 2.61 7.82 -2.39 -0.02 2.60 16 34 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 35 H 0.11 1.90 7.78 -2.39 -0.02 1.88 16 36 H 0.10 1.40 6.82 -2.38 -0.02 1.39 16 37 H 0.10 1.48 6.82 -2.39 -0.02 1.47 16 38 H 0.14 3.07 7.82 -2.91 -0.02 3.05 16 39 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 40 H 0.25 -0.35 8.06 -2.91 -0.02 -0.37 16 41 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 42 H 0.16 2.39 4.57 -2.91 -0.01 2.37 16 43 H 0.05 1.96 7.44 -2.39 -0.02 1.94 16 44 H 0.05 1.91 7.78 -2.39 -0.02 1.89 16 45 H 0.04 1.66 7.86 -2.39 -0.02 1.64 16 46 H 0.01 0.61 7.42 -2.39 -0.02 0.59 16 Total: -1.00 -78.17 367.06 3.97 -74.21 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.01 Total: 9.05 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.96 Total: 6.25 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -4.87 Total: -111.21 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.15 Total: -26.45 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -78.17 3.97 -74.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041312812.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.041 kcal (2) G-P(sol) polarization free energy of solvation -78.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds