Wall clock time and date at job start Sat Apr 11 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99903 * 2 1 4 4 H 1.48501 * 109.47202 * 270.00174 * 3 2 1 5 5 H 1.48498 * 109.47311 * 30.00099 * 3 2 1 6 6 H 1.48504 * 109.47034 * 149.99963 * 3 2 1 7 7 C 1.38810 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00462 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.46893 * 125.36013 * 0.02562 * 9 7 2 11 11 C 1.54526 * 106.66231 * 164.88734 * 10 9 7 12 12 C 1.53322 * 102.38656 * 27.58867 * 11 10 9 13 13 H 1.09004 * 105.07859 * 80.45948 * 12 11 10 14 14 C 1.48606 * 114.95820 * 196.30613 * 12 11 10 15 15 C 1.50983 * 116.02265 * 90.58278 * 14 12 11 16 16 N 1.44469 * 113.13794 * 32.07527 * 15 14 12 17 17 C 1.34769 * 117.13801 * 148.27734 * 16 15 14 18 18 O 1.21578 * 120.00017 * 185.69068 * 17 16 15 19 19 C 1.47700 * 120.00245 * 5.68966 * 17 16 15 20 20 C 1.40099 * 120.02724 * 220.68761 * 19 17 16 21 21 C 1.36435 * 120.68908 * 179.97438 * 20 19 17 22 22 C 1.39161 * 120.27062 * 0.02562 * 21 20 19 23 23 O 1.34743 * 133.25237 * 179.97438 * 22 21 20 24 24 C 1.34442 * 110.95842 * 180.02562 * 23 22 21 25 25 C 1.33959 * 110.19703 * 0.02562 * 24 23 22 26 26 C 1.40671 * 119.54322 * 0.02562 * 22 21 20 27 27 C 1.39082 * 120.20590 * 359.97358 * 26 22 21 28 28 C 1.43942 * 125.72472 * 328.56058 * 16 15 14 29 29 C 1.48181 * 125.35991 * 180.02562 * 9 7 2 30 30 H 1.08998 * 109.74905 * 57.25080 * 29 9 7 31 31 H 0.96997 * 120.00082 * 359.97438 * 1 2 3 32 32 H 1.08995 * 110.01608 * 45.58590 * 10 9 7 33 33 H 1.09003 * 110.05595 * 284.20762 * 10 9 7 34 34 H 1.08996 * 110.82071 * 269.36125 * 11 10 9 35 35 H 1.09000 * 110.98768 * 145.89127 * 11 10 9 36 36 H 1.08999 * 108.16944 * 328.88173 * 14 12 11 37 37 H 1.09002 * 108.00828 * 212.15830 * 14 12 11 38 38 H 1.08998 * 108.74932 * 271.12802 * 15 14 12 39 39 H 1.09005 * 108.65445 * 152.95175 * 15 14 12 40 40 H 1.07997 * 119.65780 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.86389 * 180.02562 * 21 20 19 42 42 H 1.08003 * 124.90262 * 180.02562 * 24 23 22 43 43 H 1.07994 * 126.92007 * 180.26901 * 25 24 23 44 44 H 1.07995 * 120.32783 * 179.97438 * 27 26 22 45 45 H 1.08993 * 108.41908 * 152.50711 * 28 16 15 46 46 H 1.09002 * 108.41314 * 269.75706 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1369 -2.5252 -0.0005 11 6 -0.4442 -3.9897 -0.3861 12 6 0.8072 -4.7282 0.1034 13 1 0.6562 -4.8629 1.1745 14 6 0.9876 -6.0939 -0.4540 15 6 1.7891 -6.1879 -1.7301 16 7 2.8215 -5.1820 -1.8275 17 6 3.9446 -5.5163 -2.4932 18 8 4.8873 -4.7490 -2.5186 19 6 4.0303 -6.8148 -3.1918 20 6 5.2146 -7.5614 -3.1410 21 6 5.3085 -8.7628 -3.7809 22 6 4.2244 -9.2634 -4.4956 23 8 4.0297 -10.3898 -5.2089 24 6 2.7883 -10.4243 -5.7240 25 6 2.1114 -9.3228 -5.3734 26 6 3.0304 -8.5220 -4.5545 27 6 2.9343 -7.2973 -3.9023 28 6 2.7582 -3.8561 -1.2709 29 6 1.9435 -3.7349 0.0016 30 1 2.6008 -3.8379 0.8650 31 1 -0.4850 0.8400 0.0004 32 1 -0.5747 -1.8468 -0.7327 33 1 -0.5333 -2.3095 0.9917 34 1 -0.5564 -4.0908 -1.4655 35 1 -1.3339 -4.3508 0.1298 36 1 0.0010 -6.5180 -0.6403 37 1 1.4804 -6.7043 0.3027 38 1 1.1125 -6.0787 -2.5777 39 1 2.2538 -7.1727 -1.7782 40 1 6.0622 -7.1822 -2.5895 41 1 6.2277 -9.3275 -3.7325 42 1 2.3938 -11.2246 -6.3325 43 1 1.0933 -9.0760 -5.6358 44 1 2.0188 -6.7262 -3.9466 45 1 3.7744 -3.5206 -1.0639 46 1 2.3251 -3.1898 -2.0170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042069454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:04 Heat of formation + Delta-G solvation = 43.381900 kcal Electronic energy + Delta-G solvation = -29713.079519 eV Core-core repulsion = 25763.474266 eV Total energy + Delta-G solvation = -3949.605253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.74737 -40.61687 -38.61151 -37.39981 -35.55392 -33.26619 -33.10888 -31.80328 -31.02319 -29.65310 -29.22327 -28.50474 -25.30444 -24.61356 -23.59690 -22.75645 -22.53009 -21.61855 -20.44958 -20.01018 -17.95843 -17.92461 -17.28116 -16.96910 -16.77624 -16.39301 -15.78314 -15.40086 -15.05677 -14.74701 -14.62425 -14.40601 -14.00953 -13.87052 -13.54361 -13.43393 -13.05640 -12.87012 -12.79878 -12.51094 -12.27268 -12.23449 -11.75033 -11.54128 -11.38757 -11.30692 -11.00428 -10.81073 -10.71329 -10.54091 -10.09895 -9.96927 -9.91730 -9.74658 -9.60517 -9.53623 -8.84335 -8.61926 -8.54489 -8.21423 -6.89614 -5.69122 -3.07401 0.60999 0.79019 2.06660 2.46157 2.76728 3.20814 3.42366 3.47744 3.49398 3.54196 4.11329 4.31708 4.47094 4.50123 4.71898 4.84405 4.92081 4.97680 5.02623 5.05644 5.11830 5.26974 5.34309 5.47148 5.53738 5.58175 5.59389 5.78563 5.80341 5.85213 5.92486 5.98760 6.04931 6.06411 6.10927 6.18901 6.24598 6.26483 6.49047 6.58179 6.58765 6.81214 6.85865 6.95627 7.07579 7.53787 7.55593 7.66020 7.84328 8.28208 8.34821 9.21566 9.80448 10.43599 11.38310 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019601 B = 0.002811 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.152956 B = 9957.552087 C =10720.690809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.167 3.833 11 C -0.136 4.136 12 C -0.093 4.093 13 H 0.056 0.944 14 C -0.108 4.108 15 C 0.112 3.888 16 N -0.582 5.582 17 C 0.546 3.454 18 O -0.533 6.533 19 C -0.137 4.137 20 C -0.043 4.043 21 C -0.113 4.113 22 C 0.067 3.933 23 O -0.195 6.195 24 C 0.003 3.997 25 C -0.202 4.202 26 C -0.141 4.141 27 C -0.037 4.037 28 C 0.101 3.899 29 C 0.166 3.834 30 H 0.042 0.958 31 H 0.252 0.748 32 H 0.083 0.917 33 H 0.020 0.980 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.209 0.791 43 H 0.161 0.839 44 H 0.141 0.859 45 H 0.079 0.921 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 -23.151 -8.543 24.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.355 4.355 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.042 3.958 11 C -0.175 4.175 12 C -0.113 4.113 13 H 0.075 0.925 14 C -0.146 4.146 15 C -0.012 4.012 16 N -0.313 5.313 17 C 0.334 3.666 18 O -0.411 6.411 19 C -0.141 4.141 20 C -0.062 4.062 21 C -0.131 4.131 22 C 0.019 3.981 23 O -0.096 6.096 24 C -0.062 4.062 25 C -0.221 4.221 26 C -0.142 4.142 27 C -0.055 4.055 28 C -0.023 4.023 29 C 0.058 3.942 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.225 0.775 43 H 0.178 0.822 44 H 0.159 0.841 45 H 0.097 0.903 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.636 -22.635 -8.494 24.320 hybrid contribution 0.102 0.899 -0.015 0.905 sum 2.738 -21.737 -8.508 23.502 Atomic orbital electron populations 1.69930 1.04874 1.24933 1.57212 1.24784 0.95717 0.97693 1.02106 0.86104 0.78627 0.83332 0.77656 1.21521 1.21706 1.20615 1.19071 0.90596 0.82214 1.43592 0.90320 1.44775 1.01571 0.99040 1.86658 1.21411 0.84157 0.90199 1.00031 1.22667 0.95548 0.99167 1.00081 1.20073 0.96788 0.93510 1.00884 0.92505 1.20353 1.00349 0.97373 0.96568 1.20972 0.90348 0.91325 0.98530 1.46711 1.16407 1.14891 1.53310 1.18372 0.82770 0.85929 0.79579 1.90791 1.36855 1.52063 1.61381 1.19860 0.95047 0.96379 1.02769 1.20683 0.96833 0.92082 0.96611 1.19578 0.96861 0.96971 0.99685 1.19848 0.96317 0.85902 0.96032 1.83995 1.32086 1.37736 1.55809 1.23963 0.82049 1.00362 0.99825 1.22558 1.01116 0.95296 1.03146 1.19857 0.94482 0.96986 1.02891 1.20975 0.98098 0.92996 0.93438 1.21625 1.02625 0.80223 0.97860 1.20242 0.92821 0.86969 0.94180 0.94059 0.93773 0.89921 0.96190 0.92611 0.92145 0.90587 0.92086 0.92447 0.90328 0.83819 0.84490 0.77494 0.82169 0.84148 0.90307 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.23 55.49 0.57 -26.18 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.25 9.81 -15.06 -0.15 -6.40 16 8 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 9 N -0.60 -14.84 2.91 -164.94 -0.48 -15.32 16 10 C 0.17 3.95 5.53 -3.03 -0.02 3.93 16 11 C -0.14 -2.43 6.47 -25.76 -0.17 -2.60 16 12 C -0.09 -1.55 2.32 -93.47 -0.22 -1.77 16 13 H 0.06 0.95 8.01 -51.93 -0.42 0.53 16 14 C -0.11 -1.36 5.55 -29.89 -0.17 -1.53 16 15 C 0.11 1.40 4.78 -6.14 -0.03 1.37 16 16 N -0.58 -9.43 3.13 -180.54 -0.57 -10.00 16 17 C 0.55 9.06 7.18 -12.40 -0.09 8.97 16 18 O -0.53 -10.82 16.10 5.30 0.09 -10.73 16 19 C -0.14 -1.80 4.81 -104.96 -0.51 -2.31 16 20 C -0.04 -0.50 9.55 -39.53 -0.38 -0.88 16 21 C -0.11 -1.13 9.99 -39.89 -0.40 -1.53 16 22 C 0.07 0.72 7.42 -38.32 -0.28 0.44 16 23 O -0.20 -1.89 10.57 4.11 0.04 -1.85 16 24 C 0.00 0.02 11.95 29.23 0.35 0.37 16 25 C -0.20 -1.62 11.15 -37.60 -0.42 -2.04 16 26 C -0.14 -1.51 6.39 -105.18 -0.67 -2.18 16 27 C -0.04 -0.42 7.69 -38.90 -0.30 -0.72 16 28 C 0.10 2.00 5.43 -6.12 -0.03 1.97 16 29 C 0.17 3.38 3.53 -68.59 -0.24 3.14 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.08 2.21 6.44 -51.93 -0.33 1.87 16 33 H 0.02 0.52 8.11 -51.93 -0.42 0.09 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.66 6.67 -51.93 -0.35 0.31 16 39 H 0.08 0.86 5.75 -51.93 -0.30 0.56 16 40 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.21 0.51 8.06 -52.48 -0.42 0.09 16 43 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.14 1.47 5.80 -52.49 -0.30 1.16 16 45 H 0.08 1.71 6.91 -51.93 -0.36 1.35 16 46 H 0.07 1.57 7.83 -51.93 -0.41 1.16 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -33.11 363.23 -9.93 -43.05 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.23 Total: 0.27 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -3.81 Total: -2.05 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.48 Total: -51.50 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.13 Total: -12.58 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.11 -9.93 -43.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042069454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.430 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds