Wall clock time and date at job start Sat Apr 11 2020 06:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99903 * 2 1 4 4 H 1.48501 * 109.47202 * 270.00174 * 3 2 1 5 5 H 1.48498 * 109.47311 * 30.00099 * 3 2 1 6 6 H 1.48504 * 109.47034 * 149.99963 * 3 2 1 7 7 C 1.38810 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00462 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.46893 * 125.36013 * 0.02562 * 9 7 2 11 11 C 1.54526 * 106.66231 * 164.88734 * 10 9 7 12 12 C 1.53322 * 102.38656 * 27.58867 * 11 10 9 13 13 H 1.09004 * 105.07859 * 80.45948 * 12 11 10 14 14 C 1.48606 * 114.95820 * 196.30613 * 12 11 10 15 15 C 1.50983 * 116.02265 * 90.58278 * 14 12 11 16 16 N 1.44469 * 113.13794 * 32.07527 * 15 14 12 17 17 C 1.34769 * 117.13801 * 148.27734 * 16 15 14 18 18 O 1.21578 * 120.00017 * 185.69068 * 17 16 15 19 19 C 1.47700 * 120.00245 * 5.68966 * 17 16 15 20 20 C 1.40099 * 120.02724 * 220.68761 * 19 17 16 21 21 C 1.36435 * 120.68908 * 179.97438 * 20 19 17 22 22 C 1.39161 * 120.27062 * 0.02562 * 21 20 19 23 23 O 1.34743 * 133.25237 * 179.97438 * 22 21 20 24 24 C 1.34442 * 110.95842 * 180.02562 * 23 22 21 25 25 C 1.33959 * 110.19703 * 0.02562 * 24 23 22 26 26 C 1.40671 * 119.54322 * 0.02562 * 22 21 20 27 27 C 1.39082 * 120.20590 * 359.97358 * 26 22 21 28 28 C 1.43942 * 125.72472 * 328.56058 * 16 15 14 29 29 C 1.48181 * 125.35991 * 180.02562 * 9 7 2 30 30 H 1.08998 * 109.74905 * 57.25080 * 29 9 7 31 31 H 0.96997 * 120.00082 * 359.97438 * 1 2 3 32 32 H 1.08995 * 110.01608 * 45.58590 * 10 9 7 33 33 H 1.09003 * 110.05595 * 284.20762 * 10 9 7 34 34 H 1.08996 * 110.82071 * 269.36125 * 11 10 9 35 35 H 1.09000 * 110.98768 * 145.89127 * 11 10 9 36 36 H 1.08999 * 108.16944 * 328.88173 * 14 12 11 37 37 H 1.09002 * 108.00828 * 212.15830 * 14 12 11 38 38 H 1.08998 * 108.74932 * 271.12802 * 15 14 12 39 39 H 1.09005 * 108.65445 * 152.95175 * 15 14 12 40 40 H 1.07997 * 119.65780 * 359.97438 * 20 19 17 41 41 H 1.07997 * 119.86389 * 180.02562 * 21 20 19 42 42 H 1.08003 * 124.90262 * 180.02562 * 24 23 22 43 43 H 1.07994 * 126.92007 * 180.26901 * 25 24 23 44 44 H 1.07995 * 120.32783 * 179.97438 * 27 26 22 45 45 H 1.08993 * 108.41908 * 152.50711 * 28 16 15 46 46 H 1.09002 * 108.41314 * 269.75706 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1369 -2.5252 -0.0005 11 6 -0.4442 -3.9897 -0.3861 12 6 0.8072 -4.7282 0.1034 13 1 0.6562 -4.8629 1.1745 14 6 0.9876 -6.0939 -0.4540 15 6 1.7891 -6.1879 -1.7301 16 7 2.8215 -5.1820 -1.8275 17 6 3.9446 -5.5163 -2.4932 18 8 4.8873 -4.7490 -2.5186 19 6 4.0303 -6.8148 -3.1918 20 6 5.2146 -7.5614 -3.1410 21 6 5.3085 -8.7628 -3.7809 22 6 4.2244 -9.2634 -4.4956 23 8 4.0297 -10.3898 -5.2089 24 6 2.7883 -10.4243 -5.7240 25 6 2.1114 -9.3228 -5.3734 26 6 3.0304 -8.5220 -4.5545 27 6 2.9343 -7.2973 -3.9023 28 6 2.7582 -3.8561 -1.2709 29 6 1.9435 -3.7349 0.0016 30 1 2.6008 -3.8379 0.8650 31 1 -0.4850 0.8400 0.0004 32 1 -0.5747 -1.8468 -0.7327 33 1 -0.5333 -2.3095 0.9917 34 1 -0.5564 -4.0908 -1.4655 35 1 -1.3339 -4.3508 0.1298 36 1 0.0010 -6.5180 -0.6403 37 1 1.4804 -6.7043 0.3027 38 1 1.1125 -6.0787 -2.5777 39 1 2.2538 -7.1727 -1.7782 40 1 6.0622 -7.1822 -2.5895 41 1 6.2277 -9.3275 -3.7325 42 1 2.3938 -11.2246 -6.3325 43 1 1.0933 -9.0760 -5.6358 44 1 2.0188 -6.7262 -3.9466 45 1 3.7744 -3.5206 -1.0639 46 1 2.3251 -3.1898 -2.0170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042069454.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:04 Heat of formation + Delta-G solvation = 23.638282 kcal Electronic energy + Delta-G solvation = -29713.935667 eV Core-core repulsion = 25763.474266 eV Total energy + Delta-G solvation = -3950.461401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.44448 -41.90299 -40.00862 -38.42757 -37.04255 -34.93524 -33.83334 -33.38523 -32.23660 -30.72112 -30.36851 -30.13311 -26.76408 -26.25802 -24.61943 -24.08737 -23.48978 -22.30805 -22.14823 -21.31512 -19.20608 -18.98759 -18.76996 -18.10613 -17.83869 -17.17104 -17.00571 -16.91867 -16.58911 -16.41033 -15.74250 -15.64436 -15.27448 -15.02467 -14.83167 -14.29806 -14.16279 -14.02794 -13.90009 -13.65191 -13.59335 -13.56888 -13.29741 -13.21958 -12.89919 -12.70970 -12.62203 -12.41892 -12.04089 -11.97625 -11.68715 -11.48995 -11.29749 -11.19935 -11.15326 -11.02556 -10.72230 -9.75025 -9.55024 -9.23935 -8.95593 -7.84337 -5.24157 -0.21039 -0.02692 1.42481 1.44056 1.45031 1.52607 1.60045 1.81916 1.96628 2.45902 2.62137 3.28254 3.30226 3.50461 3.55700 3.67000 3.73103 3.76069 3.96715 4.02854 4.15478 4.19299 4.23343 4.30194 4.37393 4.40511 4.43361 4.57861 4.68281 4.73688 4.87674 4.89519 4.91740 4.98934 5.05268 5.07325 5.13239 5.13842 5.25445 5.35923 5.44517 5.46420 5.48829 5.51643 5.64520 5.70167 5.81247 6.12839 6.23007 6.30516 7.03750 7.09481 7.74376 8.35884 9.20878 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019601 B = 0.002811 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.152956 B = 9957.552087 C =10720.690809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.615 5.615 10 C 0.169 3.831 11 C -0.119 4.119 12 C -0.082 4.082 13 H 0.059 0.941 14 C -0.105 4.105 15 C 0.104 3.896 16 N -0.582 5.582 17 C 0.544 3.456 18 O -0.583 6.583 19 C -0.153 4.153 20 C -0.055 4.055 21 C -0.104 4.104 22 C 0.054 3.946 23 O -0.203 6.203 24 C 0.016 3.984 25 C -0.215 4.215 26 C -0.151 4.151 27 C -0.033 4.033 28 C 0.125 3.875 29 C 0.162 3.838 30 H 0.030 0.970 31 H 0.247 0.753 32 H 0.046 0.954 33 H -0.010 1.010 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.142 0.858 41 H 0.161 0.839 42 H 0.253 0.747 43 H 0.184 0.816 44 H 0.150 0.850 45 H 0.049 0.951 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 -27.137 -9.888 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.801 3.199 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.340 5.340 10 C 0.044 3.956 11 C -0.157 4.157 12 C -0.101 4.101 13 H 0.078 0.922 14 C -0.143 4.143 15 C -0.017 4.017 16 N -0.312 5.312 17 C 0.334 3.666 18 O -0.464 6.464 19 C -0.156 4.156 20 C -0.074 4.074 21 C -0.122 4.122 22 C 0.006 3.994 23 O -0.104 6.104 24 C -0.048 4.048 25 C -0.233 4.233 26 C -0.152 4.152 27 C -0.051 4.051 28 C 0.000 4.000 29 C 0.055 3.945 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.008 0.992 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.131 0.869 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.160 0.840 41 H 0.179 0.821 42 H 0.269 0.731 43 H 0.202 0.798 44 H 0.167 0.833 45 H 0.067 0.933 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.709 -26.683 -9.840 28.491 hybrid contribution 0.407 2.031 0.328 2.097 sum 2.116 -24.652 -9.512 26.508 Atomic orbital electron populations 1.70149 1.05936 1.25113 1.58236 1.25540 0.96625 1.00624 1.02562 0.85170 0.77680 0.79593 0.77477 1.21410 1.21536 1.19887 1.19303 0.90658 0.83832 1.42894 0.91027 1.45029 1.02489 1.00065 1.86436 1.21218 0.83284 0.93776 0.97321 1.22532 0.97317 0.94783 1.01066 1.20064 0.93986 0.94439 1.01638 0.92195 1.20395 1.02667 0.94519 0.96758 1.21333 0.89799 0.91099 0.99480 1.46722 1.17611 1.14067 1.52790 1.18971 0.81885 0.86788 0.78922 1.90755 1.38619 1.53872 1.63183 1.19571 0.96735 0.95026 1.04304 1.20702 0.96383 0.92787 0.97495 1.19750 0.97752 0.96264 0.98478 1.20065 0.96577 0.86481 0.96285 1.84021 1.33595 1.37162 1.55644 1.24888 0.80522 1.00918 0.98435 1.22893 1.02096 0.95191 1.03166 1.20162 0.95412 0.96692 1.02917 1.20977 0.97713 0.93373 0.93057 1.20972 1.00289 0.82079 0.96687 1.20411 0.94206 0.86257 0.93635 0.95198 0.94312 0.93606 0.99214 0.91616 0.88954 0.86857 0.90340 0.90543 0.87964 0.84020 0.82135 0.73107 0.79846 0.83269 0.93290 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.24 10.23 21.65 0.22 -57.02 16 2 C -0.06 -3.53 5.48 84.86 0.47 -3.06 16 3 Si 0.97 47.58 29.55 68.60 2.03 49.61 16 4 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.24 -13.79 9.81 84.03 0.82 -12.96 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.62 -32.05 2.91 -675.74 -1.97 -34.02 16 10 C 0.17 8.27 5.53 86.82 0.48 8.75 16 11 C -0.12 -4.05 6.47 31.22 0.20 -3.85 16 12 C -0.08 -2.58 2.32 -12.64 -0.03 -2.61 16 13 H 0.06 1.87 8.01 -2.38 -0.02 1.85 16 14 C -0.11 -2.24 5.55 28.55 0.16 -2.09 16 15 C 0.10 2.32 4.78 86.10 0.41 2.74 16 16 N -0.58 -18.84 3.13 -843.38 -2.64 -21.49 16 17 C 0.54 18.48 7.18 86.74 0.62 19.10 16 18 O -0.58 -25.05 16.10 -3.96 -0.06 -25.11 16 19 C -0.15 -3.92 4.81 -20.08 -0.10 -4.01 16 20 C -0.05 -1.23 9.55 22.30 0.21 -1.01 16 21 C -0.10 -1.90 9.99 22.07 0.22 -1.67 16 22 C 0.05 1.02 7.42 23.09 0.17 1.19 16 23 O -0.20 -3.22 10.57 -8.20 -0.09 -3.30 16 24 C 0.02 0.15 11.95 66.85 0.80 0.95 16 25 C -0.21 -2.57 11.15 23.55 0.26 -2.30 16 26 C -0.15 -2.79 6.39 -20.23 -0.13 -2.92 16 27 C -0.03 -0.68 7.69 22.71 0.17 -0.50 16 28 C 0.13 5.22 5.43 86.39 0.47 5.69 16 29 C 0.16 6.78 3.53 43.64 0.15 6.94 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 32 H 0.05 2.57 6.44 -2.39 -0.02 2.55 16 33 H -0.01 -0.55 8.11 -2.39 -0.02 -0.57 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.11 1.71 7.94 -2.39 -0.02 1.69 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.46 6.67 -2.39 -0.02 1.44 16 39 H 0.10 1.88 5.75 -2.38 -0.01 1.87 16 40 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 41 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.25 -0.22 8.06 -2.91 -0.02 -0.24 16 43 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 44 H 0.15 2.72 5.80 -2.91 -0.02 2.71 16 45 H 0.05 2.30 6.91 -2.39 -0.02 2.28 16 46 H 0.04 1.73 7.83 -2.39 -0.02 1.71 16 Total: -1.00 -78.64 363.23 3.86 -74.77 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.00 Total: 8.20 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 5.37 Total: 8.36 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -4.39 Total: -112.52 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.15 Total: -28.42 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -78.64 3.86 -74.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042069454.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.410 kcal (2) G-P(sol) polarization free energy of solvation -78.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds