Wall clock time and date at job start Sat Apr 11 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46499 * 109.47312 * 2 1 4 4 N 1.28441 * 125.19066 * 265.09467 * 3 2 1 5 5 C 1.30832 * 110.97970 * 179.97438 * 4 3 2 6 6 C 1.39804 * 107.88028 * 359.73986 * 5 4 3 7 7 Cl 1.73605 * 127.34001 * 180.26633 * 6 5 4 8 8 C 1.36746 * 125.18575 * 85.04633 * 3 2 1 9 9 C 1.47038 * 126.90553 * 0.04353 * 8 3 2 10 10 O 1.21648 * 119.99170 * 269.82588 * 9 8 3 11 11 N 1.34768 * 120.00234 * 89.82596 * 9 8 3 12 12 C 1.46932 * 120.62818 * 5.73595 * 11 9 8 13 13 C 1.53197 * 108.77362 * 233.61013 * 12 11 9 14 14 C 1.53047 * 109.31001 * 305.36543 * 13 12 11 15 15 H 1.09002 * 109.46024 * 301.34604 * 14 13 12 16 16 N 1.46505 * 109.45535 * 181.38973 * 14 13 12 17 17 C 1.36930 * 120.00220 * 84.93441 * 16 14 13 18 18 H 1.07999 * 120.00339 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99915 * 179.97438 * 17 16 14 20 20 N 1.31623 * 120.00312 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00009 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47033 * 89.99708 * 21 19 17 23 23 H 1.48493 * 109.47264 * 209.99577 * 21 19 17 24 24 H 1.48500 * 109.47166 * 330.00235 * 21 19 17 25 25 C 1.53037 * 109.53647 * 61.36766 * 14 13 12 26 26 C 1.46925 * 120.63126 * 185.73995 * 11 9 8 27 27 H 1.09004 * 109.58417 * 246.17585 * 26 11 9 28 28 C 1.52992 * 109.58621 * 6.60175 * 26 11 9 29 29 H 1.08999 * 109.46778 * 304.99743 * 1 2 3 30 30 H 1.09002 * 109.47236 * 64.99010 * 1 2 3 31 31 H 1.08999 * 109.47279 * 184.99545 * 1 2 3 32 32 H 1.09003 * 109.46603 * 240.00364 * 2 1 3 33 33 H 1.08993 * 109.46997 * 120.00407 * 2 1 3 34 34 H 1.08002 * 126.05612 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.58431 * 113.82717 * 12 11 9 36 36 H 1.08997 * 109.70892 * 353.46524 * 12 11 9 37 37 H 1.08996 * 109.49336 * 185.41895 * 13 12 11 38 38 H 1.08994 * 109.49857 * 65.31916 * 13 12 11 39 39 H 0.97005 * 119.99381 * 264.93145 * 16 14 13 40 40 H 0.96998 * 120.00013 * 180.02562 * 20 19 17 41 41 H 1.09007 * 109.49392 * 178.68001 * 25 14 13 42 42 H 1.08998 * 109.52465 * 58.60583 * 25 14 13 43 43 H 1.08999 * 109.47289 * 173.73370 * 28 26 11 44 44 H 1.09002 * 109.47216 * 293.73290 * 28 26 11 45 45 H 1.08998 * 109.47113 * 53.73407 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3498 2.0491 -1.0458 5 6 2.7462 3.2542 -0.7259 6 6 2.6575 3.3805 0.6636 7 17 3.0524 4.7733 1.6217 8 6 2.1901 2.1563 1.1134 9 6 1.9263 1.7700 2.5074 10 8 0.8283 1.9624 2.9944 11 7 2.9009 1.2028 3.2455 12 6 4.2654 1.0780 2.7148 13 6 4.7039 -0.3860 2.8214 14 6 4.5469 -0.8572 4.2690 15 1 5.1490 -0.2268 4.9234 16 7 4.9967 -2.2470 4.3813 17 6 6.3241 -2.5237 4.5719 18 1 7.0396 -1.7176 4.6391 19 6 6.7502 -3.8405 4.6788 20 7 5.8781 -4.8231 4.5975 21 14 8.5611 -4.2181 4.9381 22 1 8.8533 -4.2663 6.3933 23 1 8.8859 -5.5307 4.3244 24 1 9.3838 -3.1575 4.3030 25 6 3.0762 -0.7623 4.6815 26 6 2.6192 0.6973 4.5960 27 1 3.1615 1.2936 5.3298 28 6 1.1167 0.7813 4.8720 29 1 -0.3633 0.5894 0.8418 30 1 -0.3634 0.4345 -0.9313 31 1 -0.3634 -1.0237 0.0895 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.0790 4.0175 -1.4137 35 1 4.9419 1.7053 3.2952 36 1 4.2835 1.3897 1.6705 37 1 5.7477 -0.4758 2.5208 38 1 4.0828 -1.0002 2.1695 39 1 4.3540 -2.9711 4.3207 40 1 6.1758 -5.7432 4.6726 41 1 2.9616 -1.1201 5.7048 42 1 2.4701 -1.3731 4.0125 43 1 0.8955 0.3050 5.8271 44 1 0.8119 1.8272 4.9084 45 1 0.5722 0.2717 4.0771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044610455.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:12 Heat of formation + Delta-G solvation = 62.616830 kcal Electronic energy + Delta-G solvation = -28748.421098 eV Core-core repulsion = 24829.509835 eV Total energy + Delta-G solvation = -3918.911262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.86937 -40.31858 -37.51212 -36.77214 -34.79549 -34.62730 -33.08084 -32.03701 -30.69413 -30.02311 -29.28771 -27.13907 -24.72729 -24.33789 -23.46506 -22.96245 -21.98660 -21.17526 -20.08315 -19.25477 -17.70948 -17.16779 -16.57882 -16.29668 -15.93563 -15.35392 -15.00901 -14.90056 -14.63137 -14.20583 -13.99578 -13.77300 -13.68674 -13.47782 -13.14128 -13.03462 -12.77840 -12.43481 -12.25361 -12.14669 -12.01475 -11.81371 -11.71126 -11.63771 -11.48559 -10.97100 -10.91130 -10.90153 -10.68995 -10.55488 -10.31272 -9.98277 -9.79969 -9.57620 -9.29277 -8.99666 -8.90350 -8.61291 -7.06362 -5.84888 -3.14513 1.30224 1.57163 2.13306 2.26862 2.62748 2.91069 3.37989 3.43642 3.45002 4.11452 4.23256 4.50494 4.59607 4.68778 4.87879 4.92541 5.00080 5.04296 5.08077 5.20663 5.24615 5.31234 5.37879 5.44833 5.48739 5.54260 5.71926 5.77758 5.78395 5.89239 5.95444 6.02116 6.16081 6.21676 6.31007 6.34580 6.38420 6.42836 6.59915 6.77626 6.91672 7.26919 7.62091 7.70664 7.94178 8.33112 9.44808 10.00710 10.35460 11.37489 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013718 B = 0.003262 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.574359 B = 8581.797348 C = 8605.254316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.114 3.886 3 N -0.259 5.259 4 N -0.272 5.272 5 C 0.022 3.978 6 C -0.124 4.124 7 Cl -0.023 7.023 8 C 0.001 3.999 9 C 0.590 3.410 10 O -0.514 6.514 11 N -0.585 5.585 12 C 0.106 3.894 13 C -0.149 4.149 14 C 0.179 3.821 15 H 0.050 0.950 16 N -0.723 5.723 17 C -0.242 4.242 18 H 0.071 0.929 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.906 3.094 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.134 4.134 26 C 0.147 3.853 27 H 0.077 0.923 28 C -0.139 4.139 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.193 0.807 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.079 0.921 42 H 0.063 0.937 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 15.134 -8.264 19.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.006 4.006 3 N -0.047 5.047 4 N -0.102 5.102 5 C -0.156 4.156 6 C -0.162 4.162 7 Cl 0.005 6.995 8 C -0.130 4.130 9 C 0.373 3.627 10 O -0.390 6.390 11 N -0.318 5.318 12 C -0.017 4.017 13 C -0.190 4.190 14 C 0.068 3.932 15 H 0.068 0.932 16 N -0.363 5.363 17 C -0.373 4.373 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.580 5.580 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.173 4.173 26 C 0.045 3.955 27 H 0.095 0.905 28 C -0.196 4.196 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.210 0.790 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.107 14.422 -8.776 19.676 hybrid contribution 1.192 0.122 0.659 1.368 sum -8.915 14.545 -8.116 18.892 Atomic orbital electron populations 1.22205 0.92900 1.04071 1.03803 1.22172 0.96430 0.75938 1.06044 1.45771 1.45029 1.12241 1.01658 1.73249 1.17218 1.06164 1.13554 1.23486 1.04577 0.94843 0.92716 1.21220 1.12109 0.90159 0.92713 1.98350 1.92568 1.37897 1.70678 1.21353 1.08511 0.92734 0.90379 1.16942 0.84535 0.78131 0.83059 1.90896 1.23798 1.53353 1.70911 1.48189 1.09915 1.57144 1.16543 1.21911 0.81543 0.99191 0.99013 1.22691 1.02052 0.92568 1.01674 1.20170 0.91905 0.88476 0.92640 0.93216 1.42410 1.06540 1.00589 1.86753 1.19221 0.84537 0.91686 1.41846 0.91146 1.24738 0.97637 0.95650 1.02681 1.69657 1.32709 0.98645 1.56975 0.86218 0.84912 0.77430 0.77791 1.21661 1.21772 1.20731 1.22309 0.98024 0.94181 1.02795 1.21418 0.97590 0.95054 0.81474 0.90472 1.22214 0.93149 1.03629 1.00651 0.91026 0.91386 0.89604 0.87066 0.87999 0.78978 0.90764 0.90839 0.90382 0.92499 0.78260 0.93456 0.90196 0.91821 0.93173 0.90521 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 10.24 37.16 0.38 -1.15 16 2 C 0.11 1.12 6.80 -4.04 -0.03 1.09 16 3 N -0.26 -3.12 3.35 -57.10 -0.19 -3.31 16 4 N -0.27 -3.30 11.89 30.61 0.36 -2.94 16 5 C 0.02 0.24 12.04 -17.39 -0.21 0.03 16 6 C -0.12 -1.52 6.82 -38.88 -0.27 -1.79 16 7 Cl -0.02 -0.27 29.24 -51.86 -1.52 -1.78 16 8 C 0.00 0.01 4.69 -82.00 -0.38 -0.37 16 9 C 0.59 8.27 6.78 -12.70 -0.09 8.18 16 10 O -0.51 -8.14 12.67 5.24 0.07 -8.07 16 11 N -0.59 -7.82 2.97 -166.62 -0.50 -8.32 16 12 C 0.11 1.40 6.34 -3.70 -0.02 1.38 16 13 C -0.15 -2.35 5.66 -26.61 -0.15 -2.50 16 14 C 0.18 3.19 2.73 -67.88 -0.19 3.00 16 15 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 16 N -0.72 -16.85 5.12 -53.38 -0.27 -17.12 16 17 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.13 13.06 55.49 0.72 -26.41 16 21 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.13 -2.03 4.84 -26.62 -0.13 -2.16 16 26 C 0.15 1.96 3.49 -67.61 -0.24 1.73 16 27 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 28 C -0.14 -1.81 7.61 37.15 0.28 -1.53 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.05 7.93 -51.93 -0.41 0.63 16 34 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.94 6.28 -51.93 -0.33 0.62 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.38 9.62 7.80 -40.82 -0.32 9.30 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.08 1.24 8.14 -51.92 -0.42 0.81 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 1.07 6.57 -51.93 -0.34 0.73 16 45 H 0.06 0.87 6.92 -51.93 -0.36 0.52 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -30.34 379.97 -8.69 -39.03 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.80 Total: 7.55 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.28 Total: -0.97 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.13 Total: -58.10 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.07 Total: -8.07 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.52 Total: -1.78 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.34 -8.69 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044610455.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.645 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds