Wall clock time and date at job start Sat Apr 11 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47159 * 2 1 4 4 N 1.28433 * 125.18700 * 264.75297 * 3 2 1 5 5 C 1.30841 * 110.98222 * 180.26658 * 4 3 2 6 6 C 1.39811 * 107.87127 * 0.02562 * 5 4 3 7 7 Cl 1.73605 * 127.33034 * 179.97438 * 6 5 4 8 8 C 1.36742 * 125.18520 * 85.06583 * 3 2 1 9 9 C 1.47029 * 126.90828 * 359.70731 * 8 3 2 10 10 O 1.21649 * 120.00295 * 269.80541 * 9 8 3 11 11 N 1.34769 * 119.99989 * 89.80302 * 9 8 3 12 12 C 1.46925 * 120.63341 * 5.53406 * 11 9 8 13 13 C 1.52763 * 109.01208 * 233.58524 * 12 11 9 14 14 C 1.53041 * 109.38069 * 305.58496 * 13 12 11 15 15 H 1.08999 * 109.44747 * 181.24672 * 14 13 12 16 16 N 1.46497 * 109.46022 * 301.21739 * 14 13 12 17 17 C 1.36937 * 120.00187 * 275.07175 * 16 14 13 18 18 H 1.07997 * 119.99419 * 359.97438 * 17 16 14 19 19 C 1.38805 * 119.99853 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00531 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99827 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46850 * 59.99817 * 21 19 17 23 23 H 1.48498 * 109.47236 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47045 * 299.99855 * 21 19 17 25 25 C 1.53047 * 109.53658 * 61.24084 * 14 13 12 26 26 C 1.46925 * 120.63226 * 185.81428 * 11 9 8 27 27 H 1.09005 * 109.58755 * 246.15443 * 26 11 9 28 28 C 1.53002 * 109.58861 * 6.58098 * 26 11 9 29 29 H 1.09005 * 109.47426 * 64.99517 * 1 2 3 30 30 H 1.08997 * 109.47697 * 184.99407 * 1 2 3 31 31 H 1.09000 * 109.46969 * 304.99473 * 1 2 3 32 32 H 1.09003 * 109.46574 * 239.99848 * 2 1 3 33 33 H 1.08998 * 109.46929 * 120.00304 * 2 1 3 34 34 H 1.07990 * 126.06091 * 179.97438 * 5 4 3 35 35 H 1.09004 * 109.58609 * 353.41560 * 12 11 9 36 36 H 1.08999 * 109.58777 * 113.83991 * 12 11 9 37 37 H 1.08998 * 109.56713 * 185.54974 * 13 12 11 38 38 H 1.09004 * 109.35801 * 65.49680 * 13 12 11 39 39 H 0.97003 * 119.99781 * 95.06817 * 16 14 13 40 40 H 0.96999 * 120.00263 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.49423 * 178.68308 * 25 14 13 42 42 H 1.08997 * 109.52728 * 58.60551 * 25 14 13 43 43 H 1.09001 * 109.46742 * 54.17442 * 28 26 11 44 44 H 1.09001 * 109.47259 * 174.17984 * 28 26 11 45 45 H 1.09008 * 109.46845 * 294.17949 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3555 2.0470 -1.0453 5 6 2.7559 3.2507 -0.7250 6 6 2.6698 3.3760 0.6648 7 17 3.0769 4.7646 1.6239 8 6 2.1903 2.1561 1.1134 9 6 1.9205 1.7720 2.5068 10 8 0.8222 1.9703 2.9907 11 7 2.8901 1.2003 3.2480 12 6 4.2543 1.0642 2.7197 13 6 4.6869 -0.3968 2.8292 14 6 4.5230 -0.8679 4.2760 15 1 4.8522 -1.9036 4.3599 16 7 5.3334 -0.0250 5.1586 17 6 6.6583 -0.3115 5.3522 18 1 7.1058 -1.1592 4.8545 19 6 7.4260 0.4869 6.1888 20 7 6.8806 1.5195 6.7957 21 14 9.2334 0.0956 6.4535 22 1 9.9470 0.1491 5.1524 23 1 9.8245 1.0914 7.3830 24 1 9.3654 -1.2644 7.0350 25 6 3.0513 -0.7663 4.6837 26 6 2.6016 0.6956 4.5973 27 1 3.1443 1.2890 5.3332 28 6 1.0985 0.7866 4.8685 29 1 -0.3634 0.4344 -0.9314 30 1 -0.3634 -1.0237 0.0895 31 1 -0.3633 0.5894 0.8419 32 1 1.8932 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.0939 4.0121 -1.4123 35 1 4.2737 1.3721 1.6742 36 1 4.9345 1.6883 3.2992 37 1 5.7313 -0.4915 2.5319 38 1 4.0651 -1.0078 2.1749 39 1 4.9313 0.7361 5.6058 40 1 7.4171 2.0777 7.3801 41 1 2.9316 -1.1239 5.7064 42 1 2.4445 -1.3739 4.0125 43 1 0.5546 0.2731 4.0757 44 1 0.8731 0.3179 5.8264 45 1 0.7971 1.8338 4.8965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044610458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:13 Heat of formation + Delta-G solvation = 48.884746 kcal Electronic energy + Delta-G solvation = -29200.997700 eV Core-core repulsion = 25281.490969 eV Total energy + Delta-G solvation = -3919.506730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.76807 -41.48260 -38.91383 -37.68436 -35.92109 -35.57377 -34.22802 -33.69209 -31.69371 -30.87423 -30.73435 -28.44307 -25.89924 -25.52749 -25.12027 -24.23705 -23.01214 -22.49773 -20.94749 -19.97634 -19.20149 -18.58455 -17.61961 -17.22289 -16.99195 -16.66924 -16.20618 -16.01172 -15.63196 -15.52489 -15.42955 -15.04664 -14.87224 -14.70539 -14.26304 -14.22396 -13.90139 -13.51681 -13.35860 -13.12656 -13.01028 -12.87312 -12.83636 -12.74028 -12.68994 -12.51654 -12.34128 -12.17312 -12.04577 -11.98944 -11.62807 -11.60977 -11.43272 -10.88825 -10.57067 -10.26105 -9.84270 -9.67301 -8.94970 -7.88800 -5.16020 0.34289 0.68373 1.14647 1.38530 1.50397 1.51347 1.57308 1.62423 1.96954 2.59948 3.11587 3.43685 3.44958 3.80539 3.85019 3.89612 3.90864 3.96774 4.04579 4.13581 4.20669 4.23845 4.29098 4.33687 4.44145 4.59060 4.65480 4.70927 4.74729 4.82534 4.90850 5.02048 5.08127 5.11264 5.12163 5.18458 5.24144 5.31777 5.38938 5.54746 5.58738 5.64751 6.22758 6.32786 6.80593 6.87054 7.40315 8.16438 8.38507 9.34163 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012922 B = 0.003952 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.351951 B = 7083.968246 C = 7686.628871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.256 5.256 4 N -0.276 5.276 5 C 0.025 3.975 6 C -0.137 4.137 7 Cl -0.028 7.028 8 C -0.015 4.015 9 C 0.592 3.408 10 O -0.538 6.538 11 N -0.577 5.577 12 C 0.127 3.873 13 C -0.137 4.137 14 C 0.166 3.834 15 H 0.055 0.945 16 N -0.731 5.731 17 C -0.231 4.231 18 H 0.077 0.923 19 C -0.071 4.071 20 N -0.968 5.968 21 Si 0.963 3.037 22 H -0.280 1.280 23 H -0.302 1.302 24 H -0.280 1.280 25 C -0.120 4.120 26 C 0.146 3.854 27 H 0.054 0.946 28 C -0.125 4.125 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.222 0.778 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.373 0.627 40 H 0.247 0.753 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.602 -3.513 -15.965 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.013 4.013 3 N -0.045 5.045 4 N -0.106 5.106 5 C -0.152 4.152 6 C -0.175 4.175 7 Cl 0.000 7.000 8 C -0.146 4.146 9 C 0.377 3.623 10 O -0.415 6.415 11 N -0.308 5.308 12 C 0.005 3.995 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.073 0.927 16 N -0.372 5.372 17 C -0.363 4.363 18 H 0.095 0.905 19 C -0.264 4.264 20 N -0.619 5.619 21 Si 0.793 3.207 22 H -0.206 1.206 23 H -0.229 1.229 24 H -0.206 1.206 25 C -0.159 4.159 26 C 0.043 3.957 27 H 0.072 0.928 28 C -0.182 4.182 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.064 0.936 32 H 0.152 0.848 33 H 0.122 0.878 34 H 0.238 0.762 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.206 0.794 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.208 -4.296 -16.525 21.587 hybrid contribution 1.452 1.394 1.498 2.509 sum -11.756 -2.902 -15.027 19.298 Atomic orbital electron populations 1.22157 0.92376 1.05038 1.02677 1.22472 0.96884 0.74869 1.07055 1.46031 1.44604 1.12915 1.00933 1.73226 1.17424 1.06503 1.13484 1.23943 1.03706 0.95254 0.92312 1.21502 1.12010 0.90392 0.93612 1.98364 1.92250 1.38529 1.70849 1.21236 1.09499 0.93628 0.90240 1.17035 0.84138 0.77629 0.83504 1.90879 1.24613 1.54297 1.71704 1.48100 1.09874 1.56717 1.16158 1.21443 0.81099 0.98692 0.98298 1.22316 1.01411 0.94649 0.99424 1.20456 0.90229 0.94418 0.89112 0.92673 1.42668 1.07325 1.33226 1.53989 1.19544 0.87276 1.08663 1.20827 0.90493 1.25399 1.01666 0.98362 1.00950 1.69793 1.36566 1.19965 1.35626 0.85368 0.81291 0.76786 0.77240 1.20643 1.22923 1.20596 1.22150 0.96003 0.94685 1.03045 1.21292 0.97516 0.95324 0.81531 0.92817 1.22074 0.92247 1.02770 1.01158 0.91432 0.87135 0.93583 0.84849 0.87806 0.76201 0.90458 0.92930 0.91688 0.90080 0.79414 0.94374 0.90463 0.88991 0.91701 0.91882 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.24 71.98 0.74 -1.61 16 2 C 0.11 1.63 6.79 86.38 0.59 2.22 16 3 N -0.26 -5.81 3.35 -334.61 -1.12 -6.93 16 4 N -0.28 -6.34 11.89 -57.07 -0.68 -7.01 16 5 C 0.03 0.56 12.04 85.22 1.03 1.59 16 6 C -0.14 -3.71 6.82 22.72 0.15 -3.56 16 7 Cl -0.03 -0.80 29.24 -2.72 -0.08 -0.88 16 8 C -0.01 -0.41 4.69 40.76 0.19 -0.22 16 9 C 0.59 18.12 6.78 86.55 0.59 18.71 16 10 O -0.54 -18.46 12.67 -4.19 -0.05 -18.51 16 11 N -0.58 -17.61 2.98 -800.14 -2.38 -19.99 16 12 C 0.13 4.01 6.07 86.22 0.52 4.54 16 13 C -0.14 -4.04 5.76 30.53 0.18 -3.87 16 14 C 0.17 5.64 3.10 45.02 0.14 5.78 16 15 H 0.06 1.87 8.08 -2.39 -0.02 1.85 16 16 N -0.73 -33.26 4.31 -322.82 -1.39 -34.65 16 17 C -0.23 -11.89 9.93 84.03 0.83 -11.06 16 18 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 19 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 20 N -0.97 -57.58 13.06 21.65 0.28 -57.30 16 21 Si 0.96 44.79 29.55 68.60 2.03 46.82 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 25 C -0.12 -3.40 5.07 30.67 0.16 -3.24 16 26 C 0.15 4.56 3.20 44.98 0.14 4.71 16 27 H 0.05 2.05 6.64 -2.38 -0.02 2.03 16 28 C -0.13 -3.58 7.61 71.98 0.55 -3.03 16 29 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.10 1.53 7.93 -2.39 -0.02 1.51 16 34 H 0.22 3.35 8.06 -2.92 -0.02 3.33 16 35 H 0.08 2.26 6.27 -2.38 -0.01 2.25 16 36 H 0.05 2.08 7.74 -2.39 -0.02 2.07 16 37 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.37 18.70 6.06 -92.71 -0.56 18.14 16 40 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.06 1.77 6.96 -2.39 -0.02 1.76 16 44 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 45 H 0.06 1.90 6.54 -2.38 -0.02 1.88 16 Total: -1.00 -65.52 375.64 3.32 -62.21 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.45 Total: 28.76 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 6.27 Total: 7.50 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -5.29 Total: -125.90 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.05 Total: -18.51 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -65.52 3.32 -62.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044610458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.091 kcal (2) G-P(sol) polarization free energy of solvation -65.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds