Wall clock time and date at job start Sat Apr 11 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46839 * 2 1 4 4 N 1.28435 * 125.18875 * 274.91078 * 3 2 1 5 5 C 1.30842 * 110.98418 * 180.02562 * 4 3 2 6 6 C 1.39811 * 107.87233 * 359.77457 * 5 4 3 7 7 Cl 1.73601 * 127.33694 * 180.26786 * 6 5 4 8 8 C 1.36752 * 125.18456 * 94.95458 * 3 2 1 9 9 C 1.47028 * 126.90966 * 359.92941 * 8 3 2 10 10 O 1.21642 * 119.99949 * 258.63607 * 9 8 3 11 11 N 1.34774 * 120.00234 * 78.62667 * 9 8 3 12 12 C 1.46495 * 120.00272 * 175.11383 * 11 9 8 13 13 C 1.52998 * 109.45842 * 59.72824 * 12 11 9 14 14 C 1.53045 * 109.45832 * 299.75803 * 12 11 9 15 15 C 1.53170 * 109.32515 * 301.35608 * 14 12 11 16 16 N 1.46930 * 108.76668 * 305.35546 * 15 14 12 17 17 C 1.36940 * 120.62911 * 233.62940 * 16 15 14 18 18 H 1.07994 * 119.99641 * 145.92310 * 17 16 15 19 19 C 1.38809 * 120.00121 * 325.92598 * 17 16 15 20 20 N 1.31617 * 120.00183 * 344.39683 * 19 17 16 21 21 Si 1.86808 * 119.99900 * 164.39254 * 19 17 16 22 22 H 1.48498 * 109.46744 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46745 * 119.99887 * 21 19 17 24 24 H 1.48497 * 109.46995 * 240.00138 * 21 19 17 25 25 C 1.46927 * 118.73981 * 53.61089 * 16 15 14 26 26 C 1.53040 * 109.46209 * 179.70226 * 12 11 9 27 27 H 1.08993 * 109.47116 * 60.00247 * 1 2 3 28 28 H 1.09003 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47133 * 299.99643 * 1 2 3 30 30 H 1.08998 * 109.47133 * 240.00357 * 2 1 3 31 31 H 1.09004 * 109.46814 * 120.00102 * 2 1 3 32 32 H 1.07989 * 126.06249 * 180.02562 * 5 4 3 33 33 H 0.97006 * 119.99642 * 354.84440 * 11 9 8 34 34 H 1.08996 * 109.47600 * 60.00392 * 13 12 11 35 35 H 1.09004 * 109.46703 * 180.02562 * 13 12 11 36 36 H 1.09000 * 109.46955 * 300.00036 * 13 12 11 37 37 H 1.09002 * 109.50104 * 61.29132 * 14 12 11 38 38 H 1.09003 * 109.49547 * 181.39462 * 14 12 11 39 39 H 1.08997 * 109.58743 * 185.57605 * 15 14 12 40 40 H 1.08997 * 109.70832 * 65.20820 * 15 14 12 41 41 H 0.97001 * 120.00357 * 179.97438 * 20 19 17 42 42 H 1.08993 * 109.58371 * 186.60257 * 25 16 15 43 43 H 1.08997 * 109.70137 * 66.24687 * 25 16 15 44 44 H 1.09005 * 109.49525 * 178.60709 * 26 12 11 45 45 H 1.08997 * 109.49581 * 298.66925 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1803 2.1090 -1.0458 5 6 2.6295 3.2955 -0.7260 6 6 2.7673 3.3417 0.6646 7 17 3.3191 4.6790 1.6241 8 6 2.3720 2.0920 1.1135 9 6 2.3339 1.6260 2.5075 10 8 1.4194 1.9615 3.2361 11 7 3.3119 0.8270 2.9779 12 6 3.3324 0.4497 4.3933 13 6 2.0412 -0.2935 4.7414 14 6 3.4437 1.7096 5.2551 15 6 4.7197 2.4693 4.8799 16 7 5.8649 1.5561 4.9958 17 6 6.9518 1.8932 5.7575 18 1 7.4956 1.1277 6.2910 19 6 7.3545 3.2188 5.8440 20 7 6.9058 4.1008 4.9763 21 14 8.5332 3.7508 7.1921 22 1 8.8870 2.5779 8.0314 23 1 9.7650 4.3104 6.5800 24 1 7.8851 4.7866 8.0360 25 6 5.8215 0.2741 4.2792 26 6 4.5329 -0.4609 4.6610 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.8503 4.0983 -1.4137 33 1 4.0002 0.4984 2.3784 34 1 1.9614 -1.1906 4.1274 35 1 2.0560 -0.5739 5.7947 36 1 1.1860 0.3548 4.5503 37 1 2.5768 2.3471 5.0813 38 1 3.4839 1.4281 6.3074 39 1 4.8551 3.3128 5.5568 40 1 4.6437 2.8318 3.8548 41 1 7.1869 5.0273 5.0370 42 1 6.6839 -0.3305 4.5596 43 1 5.8350 0.4535 3.2041 44 1 4.5628 -0.7219 5.7190 45 1 4.4410 -1.3687 4.0648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045449639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:17 Heat of formation + Delta-G solvation = 39.506501 kcal Electronic energy + Delta-G solvation = -29225.813421 eV Core-core repulsion = 25305.900020 eV Total energy + Delta-G solvation = -3919.913402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.70710 -41.38037 -38.86500 -37.61887 -36.12045 -35.56394 -33.81029 -32.82651 -31.65273 -31.28858 -30.79642 -29.04709 -25.93740 -25.37796 -24.53397 -23.92116 -22.79757 -22.49913 -21.15176 -20.26327 -19.35939 -18.69817 -17.37005 -17.16151 -16.82239 -16.45834 -16.22183 -15.87477 -15.54534 -15.44814 -15.19671 -15.01419 -14.83888 -14.65656 -14.45174 -14.03559 -13.87140 -13.32429 -13.19293 -13.10735 -13.00537 -12.86323 -12.84082 -12.75302 -12.60639 -12.54743 -12.33115 -12.19479 -11.94442 -11.80099 -11.57946 -11.45916 -11.28727 -10.78166 -10.53321 -10.36746 -10.10801 -9.83966 -8.55070 -7.83933 -5.35780 0.32867 0.75857 1.24686 1.38043 1.44340 1.47104 1.56591 1.66496 2.19228 2.51415 3.30549 3.35273 3.45545 3.74617 3.83714 3.91750 3.93270 4.04245 4.11011 4.15396 4.22064 4.31657 4.50065 4.66349 4.69655 4.73283 4.75447 4.76243 4.89699 4.96652 5.04112 5.10145 5.13530 5.15031 5.18470 5.36820 5.39528 5.47293 5.54708 5.57746 5.69015 5.77261 6.40597 6.44412 6.78682 7.01507 7.18912 7.89214 8.43881 9.20376 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.004330 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.203986 B = 6465.167892 C = 7689.738635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.104 3.896 3 N -0.256 5.256 4 N -0.272 5.272 5 C 0.021 3.979 6 C -0.134 4.134 7 Cl -0.029 7.029 8 C -0.024 4.024 9 C 0.600 3.400 10 O -0.541 6.541 11 N -0.687 5.687 12 C 0.187 3.813 13 C -0.152 4.152 14 C -0.141 4.141 15 C 0.196 3.804 16 N -0.604 5.604 17 C -0.265 4.265 18 H 0.065 0.935 19 C -0.042 4.042 20 N -0.926 5.926 21 Si 0.958 3.042 22 H -0.263 1.263 23 H -0.293 1.293 24 H -0.295 1.295 25 C 0.139 3.861 26 C -0.122 4.122 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.044 0.956 30 H 0.133 0.867 31 H 0.111 0.889 32 H 0.219 0.781 33 H 0.406 0.594 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.026 0.974 40 H 0.003 0.997 41 H 0.246 0.754 42 H 0.059 0.941 43 H 0.015 0.985 44 H 0.078 0.922 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.921 -12.156 -11.143 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.014 4.014 3 N -0.046 5.046 4 N -0.103 5.103 5 C -0.156 4.156 6 C -0.172 4.172 7 Cl 0.000 7.000 8 C -0.155 4.155 9 C 0.383 3.617 10 O -0.417 6.417 11 N -0.338 5.338 12 C 0.102 3.898 13 C -0.210 4.210 14 C -0.181 4.181 15 C 0.070 3.930 16 N -0.328 5.328 17 C -0.396 4.396 18 H 0.083 0.917 19 C -0.238 4.238 20 N -0.571 5.571 21 Si 0.787 3.213 22 H -0.187 1.187 23 H -0.220 1.220 24 H -0.222 1.222 25 C 0.014 3.986 26 C -0.161 4.161 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.063 0.937 30 H 0.151 0.849 31 H 0.129 0.871 32 H 0.236 0.764 33 H 0.243 0.757 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.021 0.979 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.033 0.967 44 H 0.097 0.903 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.836 -12.502 -11.428 21.253 hybrid contribution 1.460 1.877 1.245 2.685 sum -11.376 -10.625 -10.183 18.601 Atomic orbital electron populations 1.22149 0.92413 1.05223 1.02425 1.22539 0.97026 0.74535 1.07298 1.46108 1.44613 1.13094 1.00761 1.73176 1.19282 1.04310 1.13493 1.23909 1.03247 0.96281 0.92199 1.21608 1.11179 0.90683 0.93723 1.98408 1.87828 1.43063 1.70711 1.21340 1.10056 0.93985 0.90139 1.16819 0.82386 0.78249 0.84279 1.90773 1.36008 1.56695 1.58209 1.46045 1.27855 1.48632 1.11276 1.20343 0.96894 0.94004 0.78529 1.22161 0.96178 1.00146 1.02551 1.22391 0.98471 0.97907 0.99357 1.20252 0.84762 0.91338 0.96671 1.44172 1.15769 1.17611 1.55223 1.19443 1.06448 0.92569 1.21110 0.91740 1.25888 1.00168 0.97995 0.99796 1.70198 1.48429 1.02490 1.35987 0.85356 0.78430 0.78060 0.79487 1.18740 1.21958 1.22243 1.21072 0.96584 0.87065 0.93891 1.22222 0.92998 0.97594 1.03320 0.91687 0.86811 0.93693 0.84866 0.87117 0.76424 0.75737 0.90395 0.90937 0.92259 0.92754 0.92011 0.95562 0.97872 0.94477 0.92280 0.96668 0.90291 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 10.24 71.98 0.74 -1.45 16 2 C 0.10 1.51 6.91 86.38 0.60 2.11 16 3 N -0.26 -6.04 3.35 -334.58 -1.12 -7.17 16 4 N -0.27 -6.72 11.89 -57.07 -0.68 -7.39 16 5 C 0.02 0.53 12.04 85.22 1.03 1.56 16 6 C -0.13 -4.24 6.89 22.72 0.16 -4.08 16 7 Cl -0.03 -1.03 29.24 -2.72 -0.08 -1.11 16 8 C -0.02 -0.73 6.72 40.76 0.27 -0.46 16 9 C 0.60 19.29 6.33 86.55 0.55 19.83 16 10 O -0.54 -20.40 13.35 -4.16 -0.06 -20.46 16 11 N -0.69 -19.92 4.10 -426.41 -1.75 -21.67 16 12 C 0.19 5.60 0.66 3.63 0.00 5.60 16 13 C -0.15 -3.75 8.39 71.98 0.60 -3.14 16 14 C -0.14 -5.60 4.67 30.67 0.14 -5.45 16 15 C 0.20 9.59 5.00 86.35 0.43 10.02 16 16 N -0.60 -29.27 2.96 -699.16 -2.07 -31.33 16 17 C -0.27 -14.36 9.52 84.03 0.80 -13.56 16 18 H 0.06 3.39 7.88 -2.91 -0.02 3.37 16 19 C -0.04 -2.35 4.90 84.86 0.42 -1.93 16 20 N -0.93 -55.73 11.57 21.65 0.25 -55.48 16 21 Si 0.96 45.24 29.58 68.60 2.03 47.27 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 25 C 0.14 5.16 6.24 86.36 0.54 5.70 16 26 C -0.12 -3.37 4.96 30.67 0.15 -3.22 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 1.38 7.66 -2.38 -0.02 1.36 16 32 H 0.22 4.12 8.06 -2.92 -0.02 4.10 16 33 H 0.41 10.65 7.25 -92.70 -0.67 9.98 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.06 1.72 5.98 -2.39 -0.01 1.71 16 37 H 0.05 2.30 6.39 -2.39 -0.02 2.28 16 38 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.03 1.50 6.49 -2.39 -0.02 1.48 16 40 H 0.00 0.17 7.74 -2.39 -0.02 0.15 16 41 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.06 2.15 7.93 -2.39 -0.02 2.13 16 43 H 0.02 0.57 6.94 -2.39 -0.02 0.55 16 44 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -72.38 374.74 3.29 -69.08 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.34 Total: 16.74 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.43 Total: 11.52 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -5.36 Total: -123.04 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.06 Total: -20.46 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -72.38 3.29 -69.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045449639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.589 kcal (2) G-P(sol) polarization free energy of solvation -72.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds