Wall clock time and date at job start Sat Apr 11 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34774 * 120.00243 * 2 1 4 4 O 1.21275 * 120.00152 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99897 * 359.97438 * 3 2 1 6 6 N 1.46494 * 109.47278 * 180.02562 * 5 3 2 7 7 C 1.34770 * 124.18189 * 90.02380 * 6 5 3 8 8 O 1.21241 * 127.15305 * 359.97438 * 7 6 5 9 9 C 1.51573 * 105.68793 * 179.97438 * 7 6 5 10 10 N 1.47310 * 103.59620 * 359.97438 * 9 7 6 11 11 C 1.46500 * 126.69453 * 180.02562 * 10 9 7 12 12 C 1.33797 * 124.17942 * 269.72753 * 6 5 3 13 13 O 1.21542 * 123.76699 * 0.03899 * 12 6 5 14 14 C 1.46500 * 119.99783 * 179.97438 * 2 1 3 15 15 H 1.08999 * 110.91648 * 177.55285 * 14 2 1 16 16 C 1.54910 * 111.00500 * 301.45601 * 14 2 1 17 17 N 1.47426 * 104.83209 * 155.08471 * 16 14 2 18 18 C 1.36932 * 125.64638 * 155.89300 * 17 16 14 19 19 H 1.08002 * 120.00173 * 0.02562 * 18 17 16 20 20 C 1.38818 * 119.99942 * 180.02562 * 18 17 16 21 21 N 1.31615 * 119.99835 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99957 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47201 * 89.99832 * 22 20 18 24 24 H 1.48504 * 109.46988 * 209.99240 * 22 20 18 25 25 H 1.48494 * 109.47504 * 329.99666 * 22 20 18 26 26 C 1.47019 * 108.70209 * 335.87354 * 17 16 14 27 27 C 1.54322 * 107.27223 * 1.05519 * 26 17 16 28 28 H 1.08995 * 110.72403 * 263.65428 * 27 26 17 29 29 O 1.42903 * 110.71746 * 140.55776 * 27 26 17 30 30 H 1.08995 * 109.47189 * 270.00562 * 1 2 3 31 31 H 1.09004 * 109.46336 * 30.00489 * 1 2 3 32 32 H 1.08998 * 109.46965 * 150.00529 * 1 2 3 33 33 H 1.09004 * 109.47091 * 300.00636 * 5 3 2 34 34 H 1.08997 * 109.47077 * 60.00487 * 5 3 2 35 35 H 1.09001 * 110.60464 * 118.52689 * 9 7 6 36 36 H 1.09002 * 110.60116 * 241.31957 * 9 7 6 37 37 H 1.08999 * 109.46701 * 89.99906 * 11 10 9 38 38 H 1.08996 * 109.47561 * 210.00739 * 11 10 9 39 39 H 1.09001 * 109.46980 * 330.00592 * 11 10 9 40 40 H 1.08998 * 110.36709 * 36.24572 * 16 14 2 41 41 H 1.09005 * 110.36466 * 273.92106 * 16 14 2 42 42 H 0.97001 * 119.99871 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.88389 * 120.48020 * 26 17 16 44 44 H 1.09004 * 109.87600 * 241.48978 * 26 17 16 45 45 H 0.96702 * 113.99961 * 61.45491 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 7 2.3375 3.5858 -0.0011 7 6 2.8291 4.1611 -1.1162 8 8 2.5770 3.8657 -2.2647 9 6 3.7629 5.2542 -0.6359 10 7 3.6809 5.1595 0.8318 11 6 4.3921 5.9934 1.8040 12 6 2.8219 4.1610 1.1055 13 8 2.5218 3.8177 2.2322 14 6 2.1975 -1.2688 0.0006 15 1 3.2730 -1.0972 -0.0430 16 6 1.8216 -2.1264 1.2346 17 7 2.0991 -3.5158 0.8272 18 6 2.3686 -4.5572 1.6746 19 1 2.3898 -4.3933 2.7419 20 6 2.6145 -5.8235 1.1618 21 7 2.5881 -6.0233 -0.1389 22 14 2.9814 -7.2442 2.3177 23 1 1.7118 -7.9152 2.6959 24 1 3.8725 -8.2183 1.6376 25 1 3.6516 -6.7288 3.5385 26 6 2.0381 -3.5982 -0.6394 27 6 1.7321 -2.1801 -1.1656 28 1 0.6648 -2.0594 -1.3507 29 8 2.4828 -1.9078 -2.3507 30 1 -0.3633 0.0001 1.0276 31 1 -0.3632 0.8900 -0.5140 32 1 -0.3633 -0.8900 -0.5137 33 1 0.7591 2.5298 -0.8908 34 1 0.7586 2.5303 0.8892 35 1 4.7811 5.0659 -0.9764 36 1 3.4194 6.2301 -0.9789 37 1 3.7869 6.8674 2.0444 38 1 4.5756 5.4177 2.7111 39 1 5.3430 6.3155 1.3795 40 1 0.7650 -2.0049 1.4733 41 1 2.4388 -1.8514 2.0899 42 1 2.7596 -6.9082 -0.4972 43 1 2.9957 -3.9406 -1.0316 44 1 1.2475 -4.2860 -0.9394 45 1 2.2845 -2.5022 -3.0872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047619432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:26 Heat of formation + Delta-G solvation = -63.572966 kcal Electronic energy + Delta-G solvation = -30802.399620 eV Core-core repulsion = 26437.307193 eV Total energy + Delta-G solvation = -4365.092427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.59072 -39.90939 -38.81743 -37.90330 -36.39808 -35.40536 -35.18541 -34.81172 -32.00384 -30.59412 -28.83287 -27.80039 -27.36680 -26.69756 -26.21071 -24.33327 -22.73103 -21.46390 -20.45694 -20.16325 -19.01245 -18.05320 -17.62581 -17.10742 -17.02754 -16.95656 -16.35761 -15.97388 -15.58606 -15.33879 -15.16478 -14.69722 -14.60027 -14.31335 -14.18379 -13.98666 -13.62524 -13.33197 -13.05478 -12.93286 -12.80400 -12.75687 -12.50580 -12.34920 -12.26497 -11.92141 -11.38863 -11.23413 -11.16250 -10.88669 -10.79319 -10.58876 -10.48674 -10.15701 -9.96334 -9.82811 -9.58277 -9.34179 -9.24324 -8.73159 -8.41317 -6.93235 -5.77503 -3.12571 1.41193 1.69919 2.56311 2.63422 2.75569 3.14441 3.38367 3.43666 3.45807 3.72120 4.32351 4.37687 4.45754 4.62494 4.69172 4.72891 4.79468 4.89269 5.04807 5.05431 5.16672 5.23276 5.28146 5.34375 5.46281 5.53374 5.56655 5.64673 5.74586 5.89938 6.02243 6.06467 6.10226 6.48591 6.57777 6.81537 6.82498 7.09632 7.32915 7.43924 7.48318 7.72077 7.81621 8.14810 8.18812 8.20993 9.13265 9.73349 10.36323 11.34061 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.002706 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.995555 B =10346.291150 C =10993.058648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.596 5.596 3 C 0.503 3.497 4 O -0.528 6.528 5 C 0.103 3.897 6 N -0.562 5.562 7 C 0.527 3.473 8 O -0.465 6.465 9 C 0.067 3.933 10 N -0.630 5.630 11 C 0.122 3.878 12 C 0.705 3.295 13 O -0.537 6.537 14 C 0.135 3.865 15 H 0.114 0.886 16 C 0.133 3.867 17 N -0.599 5.599 18 C -0.230 4.230 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.923 5.923 22 Si 0.916 3.084 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.152 3.848 27 C 0.064 3.936 28 H 0.058 0.942 29 O -0.561 6.561 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.049 0.951 42 H 0.254 0.746 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 25.020 -2.279 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.329 5.329 3 C 0.289 3.711 4 O -0.404 6.404 5 C -0.022 4.022 6 N -0.307 5.307 7 C 0.314 3.686 8 O -0.334 6.334 9 C -0.059 4.059 10 N -0.370 5.370 11 C -0.019 4.019 12 C 0.408 3.592 13 O -0.410 6.410 14 C 0.031 3.969 15 H 0.132 0.868 16 C 0.005 3.995 17 N -0.327 5.327 18 C -0.358 4.358 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.570 5.570 22 Si 0.746 3.254 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.027 3.973 27 C 0.004 3.996 28 H 0.076 0.924 29 O -0.366 6.366 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.756 24.945 -1.834 25.164 hybrid contribution -0.156 -1.396 0.128 1.410 sum -2.913 23.549 -1.706 23.790 Atomic orbital electron populations 1.21906 0.79618 1.03427 1.02436 1.47664 1.06931 1.05710 1.72575 1.20571 0.88397 0.85274 0.76860 1.90717 1.13649 1.86889 1.49132 1.21527 0.90654 0.83137 1.06901 1.45877 1.43719 1.32551 1.08552 1.20853 0.80297 0.82752 0.84705 1.90840 1.59449 1.65286 1.17843 1.22475 1.02279 1.00018 0.81123 1.47404 1.46812 1.36223 1.06555 1.21521 0.95586 0.93474 0.91295 1.15753 0.79540 0.79845 0.84110 1.90994 1.63098 1.66654 1.20285 1.22423 0.98390 0.80850 0.95260 0.86787 1.21771 0.97941 0.85530 0.94243 1.44238 1.83391 1.03077 1.01974 1.19082 1.41282 0.86464 0.88968 0.90112 1.24826 1.01684 0.97625 0.96183 1.69927 1.55567 1.21610 1.09934 0.86059 0.77765 0.82006 0.79575 1.21524 1.21600 1.20572 1.21858 1.01766 0.89474 0.84224 1.23578 0.93522 0.97503 0.84999 0.92424 1.86499 1.67322 1.59638 1.23154 0.91750 0.91296 0.90053 0.85787 0.85556 0.85840 0.85955 0.91978 0.89852 0.90137 0.95576 0.93317 0.93617 0.92191 0.93293 0.77860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.13 59.85 0.55 1.32 16 2 N -0.60 -9.50 2.91 -171.48 -0.50 -10.00 16 3 C 0.50 8.37 7.74 -10.98 -0.09 8.28 16 4 O -0.53 -11.04 15.81 5.56 0.09 -10.96 16 5 C 0.10 1.23 4.73 -5.20 -0.02 1.20 16 6 N -0.56 -7.02 2.09 -122.02 -0.26 -7.27 16 7 C 0.53 5.97 8.31 -10.56 -0.09 5.88 16 8 O -0.47 -6.52 17.76 5.59 0.10 -6.42 16 9 C 0.07 0.46 7.66 -4.32 -0.03 0.42 16 10 N -0.63 -5.58 3.42 -187.95 -0.64 -6.22 16 11 C 0.12 0.67 11.17 59.85 0.67 1.34 16 12 C 0.71 9.10 8.31 -88.02 -0.73 8.37 16 13 O -0.54 -8.67 17.15 5.33 0.09 -8.58 16 14 C 0.13 2.67 3.18 -65.78 -0.21 2.46 16 15 H 0.11 2.66 7.02 -51.93 -0.36 2.29 16 16 C 0.13 2.82 6.83 -2.53 -0.02 2.81 16 17 N -0.60 -15.40 3.39 -170.07 -0.58 -15.97 16 18 C -0.23 -6.43 10.28 -15.06 -0.15 -6.59 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 21 N -0.92 -26.88 10.31 55.49 0.57 -26.31 16 22 Si 0.92 22.14 29.55 -169.99 -5.02 17.12 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.15 3.67 5.15 -3.07 -0.02 3.66 16 27 C 0.06 1.25 3.87 -24.90 -0.10 1.15 16 28 H 0.06 0.99 6.03 -51.93 -0.31 0.68 16 29 O -0.56 -10.69 13.39 -35.23 -0.47 -11.17 16 30 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.07 0.54 6.44 -51.93 -0.33 0.20 16 32 H 0.08 0.93 6.02 -51.93 -0.31 0.62 16 33 H 0.12 1.16 7.26 -51.93 -0.38 0.79 16 34 H 0.13 1.26 7.82 -51.93 -0.41 0.85 16 35 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.08 0.58 8.03 -51.93 -0.42 0.16 16 39 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.03 0.52 7.22 -51.93 -0.37 0.14 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.06 1.64 7.29 -51.93 -0.38 1.26 16 44 H 0.05 1.26 7.50 -51.93 -0.39 0.87 16 45 H 0.37 5.54 9.11 45.56 0.42 5.96 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -39.74 373.64 -6.66 -46.40 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.33 Total: 3.74 kcal Atomic # 6 Polarization: 30.35 SS G_CDS: -0.34 Total: 30.02 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: -1.40 Total: -65.78 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.19 Total: -37.12 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.74 -6.66 -46.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047619432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.173 kcal (2) G-P(sol) polarization free energy of solvation -39.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds