Wall clock time and date at job start Sat Apr 11 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34256 * 125.75131 * 2 1 4 4 C 1.38047 * 107.41408 * 179.97438 * 3 2 1 5 5 C 1.47430 * 126.41392 * 179.97438 * 4 3 2 6 6 O 1.21605 * 120.00083 * 184.91383 * 5 4 3 7 7 N 1.34778 * 120.00184 * 4.91689 * 5 4 3 8 8 C 1.46656 * 125.32945 * 355.20652 * 7 5 4 9 9 C 1.53675 * 107.96804 * 179.29556 * 8 7 5 10 10 H 1.09001 * 113.32186 * 106.32741 * 9 8 7 11 11 C 1.53984 * 109.29728 * 233.05913 * 9 8 7 12 12 N 1.46764 * 106.67774 * 82.33861 * 11 9 8 13 13 C 1.36932 * 125.33619 * 198.43319 * 12 11 9 14 14 H 1.07995 * 120.00286 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00129 * 0.02562 * 13 12 11 16 16 N 1.31624 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00365 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47233 * 89.99631 * 17 15 13 19 19 H 1.48497 * 109.47208 * 210.00331 * 17 15 13 20 20 H 1.48497 * 109.46693 * 329.99765 * 17 15 13 21 21 C 1.46662 * 109.32816 * 18.45228 * 12 11 9 22 22 C 1.53673 * 107.97305 * 359.28979 * 21 12 11 23 23 H 1.09006 * 112.77458 * 106.01370 * 22 21 12 24 24 C 1.46751 * 125.33680 * 175.20462 * 7 5 4 25 25 C 1.41292 * 107.16947 * 0.23244 * 4 3 2 26 26 C 1.50703 * 125.98478 * 179.74239 * 25 4 3 27 27 F 1.39902 * 109.46487 * 209.99314 * 26 25 4 28 28 F 1.39894 * 109.47133 * 329.99145 * 26 25 4 29 29 N 1.30441 * 108.02429 * 359.61110 * 25 4 3 30 30 H 1.09000 * 109.47037 * 90.00092 * 1 2 3 31 31 H 1.09001 * 109.47344 * 209.99764 * 1 2 3 32 32 H 1.09005 * 109.47039 * 330.00132 * 1 2 3 33 33 H 1.07998 * 126.29744 * 359.95647 * 3 2 1 34 34 H 1.08993 * 109.77149 * 59.66255 * 8 7 5 35 35 H 1.09008 * 109.76757 * 298.91826 * 8 7 5 36 36 H 1.09003 * 110.01760 * 323.03932 * 11 9 8 37 37 H 1.08992 * 110.02060 * 201.64412 * 11 9 8 38 38 H 0.96999 * 119.99933 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.76578 * 239.65812 * 21 12 11 40 40 H 1.09000 * 109.76589 * 118.92337 * 21 12 11 41 41 H 1.09006 * 110.01658 * 79.14114 * 24 7 5 42 42 H 1.09002 * 110.02115 * 317.75891 * 24 7 5 43 43 H 1.08997 * 109.47605 * 89.99860 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6553 0.0006 5 6 4.7638 1.5061 0.0003 6 8 5.8659 1.0001 -0.0893 7 7 4.6430 2.8448 0.0994 8 6 3.3760 3.5833 0.1130 9 6 3.7004 5.0785 0.2574 10 1 3.5552 5.6425 -0.6640 11 6 2.9080 5.6588 1.4434 12 7 3.6695 5.3378 2.6562 13 6 3.1695 5.3468 3.9309 14 1 3.8094 5.0955 4.7638 15 6 1.8400 5.6788 4.1527 16 7 1.0602 5.9855 3.1376 17 14 1.1580 5.6918 5.8917 18 1 1.3355 7.0423 6.4829 19 1 -0.2871 5.3516 5.8592 20 1 1.8835 4.6915 6.7153 21 6 5.0501 5.0062 2.2889 22 6 5.1708 5.1045 0.7601 23 1 5.7160 5.9911 0.4360 24 6 5.7586 3.7918 0.2106 25 6 3.5310 -0.7574 -0.0045 26 6 4.7322 -1.6675 -0.0113 27 9 4.4119 -2.8572 -0.6742 28 9 5.7917 -1.0364 -0.6717 29 7 2.2827 -1.1356 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.9166 2.1170 -0.0007 34 1 2.7670 3.2551 0.9553 35 1 2.8388 3.4111 -0.8197 36 1 1.9197 5.2014 1.4914 37 1 2.8146 6.7395 1.3366 38 1 0.1311 6.2171 3.2925 39 1 5.2843 3.9921 2.6128 40 1 5.7360 5.7110 2.7590 41 1 6.2017 3.9632 -0.7705 42 1 6.5107 3.4034 0.8973 43 1 5.0248 -1.8907 1.0146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048866998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:29 Heat of formation + Delta-G solvation = -4.234586 kcal Electronic energy + Delta-G solvation = -30944.737071 eV Core-core repulsion = 26471.130233 eV Total energy + Delta-G solvation = -4473.606838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.79219 -46.76961 -41.63774 -39.94498 -37.90436 -34.96966 -33.86174 -32.49492 -31.10564 -30.09742 -29.39336 -28.57398 -26.11112 -25.58407 -25.20561 -23.45036 -21.73400 -20.90722 -20.06822 -19.55960 -19.41012 -17.43789 -17.17762 -17.01343 -16.84955 -16.46800 -16.08232 -15.82758 -15.57995 -15.09369 -14.80830 -14.27808 -13.85622 -13.70963 -13.37116 -13.29913 -13.16206 -13.07947 -13.06183 -12.67694 -12.59166 -12.49630 -12.09004 -11.89426 -11.63751 -11.49568 -11.33098 -11.08473 -11.03658 -10.89601 -10.42632 -10.21080 -10.04697 -9.94741 -9.77799 -9.70778 -9.54696 -8.86920 -8.73233 -8.28705 -6.92861 -5.79745 -3.17105 1.40367 1.78118 2.02797 3.24133 3.32100 3.38455 3.39348 3.52628 3.63622 4.05122 4.32192 4.39799 4.60707 4.68581 4.84182 4.88701 4.90707 4.95778 5.15271 5.17354 5.21544 5.25094 5.38787 5.42802 5.51540 5.59061 5.70622 5.81692 5.91527 5.97196 6.08200 6.17103 6.29665 6.49850 6.55865 6.60752 6.69052 6.81969 7.22401 7.34200 7.51992 7.68318 7.79343 8.20331 8.47555 9.12741 9.72755 10.36077 11.27073 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.003926 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.021850 B = 7130.220331 C = 8270.198948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.353 5.353 3 C 0.099 3.901 4 C -0.257 4.257 5 C 0.601 3.399 6 O -0.531 6.531 7 N -0.604 5.604 8 C 0.105 3.895 9 C -0.124 4.124 10 H 0.090 0.910 11 C 0.170 3.830 12 N -0.601 5.601 13 C -0.220 4.220 14 H 0.077 0.923 15 C -0.009 4.009 16 N -0.925 5.925 17 Si 0.912 3.088 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.142 3.858 22 C -0.109 4.109 23 H 0.098 0.902 24 C 0.124 3.876 25 C 0.048 3.952 26 C 0.357 3.643 27 F -0.198 7.198 28 F -0.159 7.159 29 N -0.265 5.265 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.204 0.796 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.020 0.980 38 H 0.252 0.748 39 H 0.026 0.974 40 H 0.023 0.977 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 -8.735 -9.056 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.132 5.132 3 C -0.051 4.051 4 C -0.272 4.272 5 C 0.390 3.610 6 O -0.408 6.408 7 N -0.337 5.337 8 C -0.018 4.018 9 C -0.144 4.144 10 H 0.108 0.892 11 C 0.045 3.955 12 N -0.327 5.327 13 C -0.349 4.349 14 H 0.095 0.905 15 C -0.204 4.204 16 N -0.574 5.574 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.016 3.984 22 C -0.129 4.129 23 H 0.116 0.884 24 C 0.001 3.999 25 C -0.121 4.121 26 C 0.301 3.699 27 F -0.180 7.180 28 F -0.139 7.139 29 N -0.088 5.088 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.220 0.780 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.038 0.962 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.184 -10.071 -9.017 13.519 hybrid contribution -0.127 0.939 0.860 1.280 sum -0.312 -9.132 -8.156 12.248 Atomic orbital electron populations 1.22127 0.72741 1.05662 1.04184 1.48415 1.07413 1.03473 1.53896 1.24123 0.90191 0.94604 0.96140 1.20029 0.93351 0.92373 1.21478 1.16753 0.87626 0.80006 0.76649 1.90850 1.26751 1.72495 1.50746 1.47958 1.08430 1.04845 1.72497 1.22273 0.86460 0.92531 1.00519 1.23201 0.96191 0.93983 1.01056 0.89172 1.21472 0.95630 0.97133 0.81266 1.44224 1.04667 1.80648 1.03152 1.19078 0.93762 1.39160 0.82865 0.90491 1.24734 0.96344 1.01746 0.97611 1.69843 1.06129 1.53331 1.28109 0.86110 0.78120 0.77825 0.83710 1.21562 1.21689 1.20734 1.21175 0.88550 0.97684 0.90962 1.22862 0.96360 0.96420 0.97247 0.88416 1.21817 0.89294 0.88331 1.00458 1.22863 0.93885 0.93575 1.01778 1.19361 0.80769 0.75933 0.93839 1.93008 1.93278 1.47830 1.83840 1.93206 1.55942 1.81607 1.83194 1.77091 1.00358 1.08009 1.23299 0.89882 0.88625 0.88198 0.77975 0.89999 0.92303 0.88663 0.96189 0.93771 0.95642 0.95929 0.92054 0.90698 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 11.44 59.85 0.68 1.39 16 2 N -0.35 -4.37 3.98 -67.59 -0.27 -4.64 16 3 C 0.10 1.31 9.93 -16.56 -0.16 1.15 16 4 C -0.26 -4.04 6.06 -105.06 -0.64 -4.67 16 5 C 0.60 10.38 7.81 -12.52 -0.10 10.28 16 6 O -0.53 -10.30 13.48 5.27 0.07 -10.23 16 7 N -0.60 -9.66 3.31 -173.61 -0.57 -10.24 16 8 C 0.10 1.56 4.40 -3.61 -0.02 1.54 16 9 C -0.12 -1.97 4.09 -88.47 -0.36 -2.34 16 10 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 11 C 0.17 3.60 4.84 -3.39 -0.02 3.59 16 12 N -0.60 -14.11 3.38 -171.88 -0.58 -14.69 16 13 C -0.22 -5.78 10.25 -15.06 -0.15 -5.94 16 14 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 15 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 16 N -0.93 -24.71 10.16 55.49 0.56 -24.15 16 17 Si 0.91 21.02 29.55 -169.99 -5.02 15.99 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 C 0.14 2.79 6.62 -3.60 -0.02 2.77 16 22 C -0.11 -1.71 4.09 -88.48 -0.36 -2.07 16 23 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 24 C 0.12 1.86 6.02 -3.40 -0.02 1.84 16 25 C 0.05 0.74 6.89 -82.02 -0.56 0.17 16 26 C 0.36 5.01 5.69 36.01 0.20 5.22 16 27 F -0.20 -2.83 17.27 2.25 0.04 -2.79 16 28 F -0.16 -2.64 13.48 2.25 0.03 -2.61 16 29 N -0.27 -3.91 12.43 33.90 0.42 -3.49 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.20 2.31 4.44 -52.49 -0.23 2.08 16 34 H 0.08 1.38 6.01 -51.93 -0.31 1.06 16 35 H 0.06 0.72 7.10 -51.92 -0.37 0.35 16 36 H 0.10 2.22 5.83 -51.93 -0.30 1.92 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 39 H 0.03 0.53 7.47 -51.93 -0.39 0.14 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.18 7.78 -51.93 -0.40 0.77 16 43 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 350.01 15.07 5.27 5.27 Total: -1.00 -32.78 350.01 -7.03 -39.81 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -5.36 Total: -0.85 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: -1.62 Total: 12.59 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.44 Total: -57.21 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.07 Total: -5.40 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.78 -7.03 -39.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048866998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.577 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds