Wall clock time and date at job start Sat Apr 11 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34256 * 125.75131 * 2 1 4 4 C 1.38047 * 107.41408 * 179.97438 * 3 2 1 5 5 C 1.47430 * 126.41392 * 179.97438 * 4 3 2 6 6 O 1.21605 * 120.00083 * 184.91383 * 5 4 3 7 7 N 1.34778 * 120.00184 * 4.91689 * 5 4 3 8 8 C 1.46656 * 125.32945 * 355.20652 * 7 5 4 9 9 C 1.53675 * 107.96804 * 179.29556 * 8 7 5 10 10 H 1.09001 * 113.32186 * 106.32741 * 9 8 7 11 11 C 1.53984 * 109.29728 * 233.05913 * 9 8 7 12 12 N 1.46764 * 106.67774 * 82.33861 * 11 9 8 13 13 C 1.36932 * 125.33619 * 198.43319 * 12 11 9 14 14 H 1.07995 * 120.00286 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00129 * 0.02562 * 13 12 11 16 16 N 1.31624 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00365 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47233 * 89.99631 * 17 15 13 19 19 H 1.48497 * 109.47208 * 210.00331 * 17 15 13 20 20 H 1.48497 * 109.46693 * 329.99765 * 17 15 13 21 21 C 1.46662 * 109.32816 * 18.45228 * 12 11 9 22 22 C 1.53673 * 107.97305 * 359.28979 * 21 12 11 23 23 H 1.09006 * 112.77458 * 106.01370 * 22 21 12 24 24 C 1.46751 * 125.33680 * 175.20462 * 7 5 4 25 25 C 1.41292 * 107.16947 * 0.23244 * 4 3 2 26 26 C 1.50703 * 125.98478 * 179.74239 * 25 4 3 27 27 F 1.39902 * 109.46487 * 209.99314 * 26 25 4 28 28 F 1.39894 * 109.47133 * 329.99145 * 26 25 4 29 29 N 1.30441 * 108.02429 * 359.61110 * 25 4 3 30 30 H 1.09000 * 109.47037 * 90.00092 * 1 2 3 31 31 H 1.09001 * 109.47344 * 209.99764 * 1 2 3 32 32 H 1.09005 * 109.47039 * 330.00132 * 1 2 3 33 33 H 1.07998 * 126.29744 * 359.95647 * 3 2 1 34 34 H 1.08993 * 109.77149 * 59.66255 * 8 7 5 35 35 H 1.09008 * 109.76757 * 298.91826 * 8 7 5 36 36 H 1.09003 * 110.01760 * 323.03932 * 11 9 8 37 37 H 1.08992 * 110.02060 * 201.64412 * 11 9 8 38 38 H 0.96999 * 119.99933 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.76578 * 239.65812 * 21 12 11 40 40 H 1.09000 * 109.76589 * 118.92337 * 21 12 11 41 41 H 1.09006 * 110.01658 * 79.14114 * 24 7 5 42 42 H 1.09002 * 110.02115 * 317.75891 * 24 7 5 43 43 H 1.08997 * 109.47605 * 89.99860 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2494 1.0896 0.0000 4 6 3.5598 0.6553 0.0006 5 6 4.7638 1.5061 0.0003 6 8 5.8659 1.0001 -0.0893 7 7 4.6430 2.8448 0.0994 8 6 3.3760 3.5833 0.1130 9 6 3.7004 5.0785 0.2574 10 1 3.5552 5.6425 -0.6640 11 6 2.9080 5.6588 1.4434 12 7 3.6695 5.3378 2.6562 13 6 3.1695 5.3468 3.9309 14 1 3.8094 5.0955 4.7638 15 6 1.8400 5.6788 4.1527 16 7 1.0602 5.9855 3.1376 17 14 1.1580 5.6918 5.8917 18 1 1.3355 7.0423 6.4829 19 1 -0.2871 5.3516 5.8592 20 1 1.8835 4.6915 6.7153 21 6 5.0501 5.0062 2.2889 22 6 5.1708 5.1045 0.7601 23 1 5.7160 5.9911 0.4360 24 6 5.7586 3.7918 0.2106 25 6 3.5310 -0.7574 -0.0045 26 6 4.7322 -1.6675 -0.0113 27 9 4.4119 -2.8572 -0.6742 28 9 5.7917 -1.0364 -0.6717 29 7 2.2827 -1.1356 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.9166 2.1170 -0.0007 34 1 2.7670 3.2551 0.9553 35 1 2.8388 3.4111 -0.8197 36 1 1.9197 5.2014 1.4914 37 1 2.8146 6.7395 1.3366 38 1 0.1311 6.2171 3.2925 39 1 5.2843 3.9921 2.6128 40 1 5.7360 5.7110 2.7590 41 1 6.2017 3.9632 -0.7705 42 1 6.5107 3.4034 0.8973 43 1 5.0248 -1.8907 1.0146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048866998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:28 Heat of formation + Delta-G solvation = -25.077523 kcal Electronic energy + Delta-G solvation = -30945.640889 eV Core-core repulsion = 26471.130233 eV Total energy + Delta-G solvation = -4474.510655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.92221 -47.92126 -42.70676 -41.24661 -39.28753 -36.53596 -34.80764 -34.15414 -32.42584 -31.59857 -30.74700 -29.50675 -27.57116 -27.00917 -26.48999 -24.81292 -22.94823 -22.04426 -21.63623 -20.77766 -20.67374 -18.85157 -18.52479 -18.23999 -18.00751 -17.73687 -17.31539 -16.87410 -16.68454 -16.57464 -16.27785 -15.64416 -15.45830 -14.95898 -14.58959 -14.53190 -14.46393 -14.18304 -14.08733 -13.89317 -13.69736 -13.49280 -13.48650 -13.40152 -13.22391 -12.86364 -12.74990 -12.70768 -12.50045 -12.15872 -11.99826 -11.84843 -11.67161 -11.43739 -11.34227 -10.88913 -10.77614 -10.66706 -9.97397 -9.51502 -8.82071 -7.78003 -5.16617 0.36014 0.63046 1.12742 1.47516 1.49248 1.56445 2.03661 2.29875 2.50857 2.59230 3.02209 3.28095 3.33739 3.40833 3.61463 3.72974 3.81794 3.89922 3.92070 3.98948 4.08366 4.20808 4.26211 4.35992 4.37842 4.52734 4.55216 4.66031 4.66916 4.77970 4.88642 4.91983 4.95770 5.07544 5.19645 5.29373 5.43500 5.52935 5.65586 5.66897 5.87177 6.16656 6.32938 6.53851 7.17706 7.20949 7.83794 8.44733 9.25853 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.012256 B = 0.003926 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.021850 B = 7130.220331 C = 8270.198948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.346 5.346 3 C 0.111 3.889 4 C -0.286 4.286 5 C 0.596 3.404 6 O -0.560 6.560 7 N -0.606 5.606 8 C 0.109 3.891 9 C -0.109 4.109 10 H 0.126 0.874 11 C 0.176 3.824 12 N -0.619 5.619 13 C -0.240 4.240 14 H 0.069 0.931 15 C -0.051 4.051 16 N -0.939 5.939 17 Si 0.967 3.033 18 H -0.290 1.290 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.139 3.861 22 C -0.096 4.096 23 H 0.126 0.874 24 C 0.126 3.874 25 C 0.035 3.965 26 C 0.353 3.647 27 F -0.201 7.201 28 F -0.175 7.175 29 N -0.281 5.281 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.221 0.779 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.072 0.928 37 H -0.008 1.008 38 H 0.249 0.751 39 H 0.011 0.989 40 H 0.020 0.980 41 H 0.086 0.914 42 H 0.064 0.936 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.373 -8.585 -10.051 13.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.124 5.124 3 C -0.040 4.040 4 C -0.301 4.301 5 C 0.386 3.614 6 O -0.440 6.440 7 N -0.338 5.338 8 C -0.013 4.013 9 C -0.129 4.129 10 H 0.144 0.856 11 C 0.051 3.949 12 N -0.345 5.345 13 C -0.369 4.369 14 H 0.087 0.913 15 C -0.245 4.245 16 N -0.589 5.589 17 Si 0.796 3.204 18 H -0.217 1.217 19 H -0.215 1.215 20 H -0.204 1.204 21 C 0.014 3.986 22 C -0.115 4.115 23 H 0.144 0.856 24 C 0.003 3.997 25 C -0.133 4.133 26 C 0.298 3.702 27 F -0.182 7.182 28 F -0.156 7.156 29 N -0.104 5.104 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.237 0.763 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.010 0.990 38 H 0.058 0.942 39 H 0.029 0.971 40 H 0.038 0.962 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.942 -9.925 -10.020 14.135 hybrid contribution 0.045 0.909 1.222 1.524 sum -0.897 -9.016 -8.798 12.629 Atomic orbital electron populations 1.22573 0.70000 1.06994 1.06149 1.48831 1.08837 1.02620 1.52152 1.24307 0.89529 0.95425 0.94784 1.20056 0.93815 0.92511 1.23673 1.16999 0.87780 0.80362 0.76218 1.90827 1.27878 1.73018 1.52279 1.48010 1.09021 1.04751 1.72046 1.22238 0.86049 0.91554 1.01478 1.23119 0.95007 0.94651 1.00137 0.85621 1.21274 0.95498 0.95469 0.82636 1.44473 1.06501 1.80493 1.03057 1.19302 0.94128 1.39226 0.84227 0.91298 1.25362 0.96588 1.01919 1.00614 1.70028 1.05960 1.53666 1.29231 0.85255 0.77346 0.77492 0.80269 1.21709 1.21523 1.20438 1.21289 0.86703 0.96506 0.94128 1.22839 0.96721 0.97957 0.93980 0.85628 1.21851 0.88904 0.87513 1.01396 1.23023 0.94374 0.93777 1.02164 1.19675 0.80202 0.75567 0.94789 1.92993 1.93277 1.47889 1.84077 1.93165 1.56764 1.82025 1.83671 1.77042 1.00394 1.09210 1.23747 0.87567 0.87764 0.86459 0.76276 0.92101 0.88750 0.90956 0.98963 0.94158 0.97143 0.96158 0.89634 0.91803 0.82748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 11.44 127.77 1.46 2.47 16 2 N -0.35 -7.91 3.98 -367.77 -1.46 -9.38 16 3 C 0.11 2.74 9.93 84.28 0.84 3.58 16 4 C -0.29 -8.71 6.06 -20.15 -0.12 -8.83 16 5 C 0.60 20.17 7.81 86.66 0.68 20.84 16 6 O -0.56 -21.68 13.48 -4.05 -0.05 -21.73 16 7 N -0.61 -18.37 3.31 -821.42 -2.72 -21.09 16 8 C 0.11 3.00 4.40 86.58 0.38 3.38 16 9 C -0.11 -3.20 4.09 -9.40 -0.04 -3.24 16 10 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 11 C 0.18 7.38 4.84 86.66 0.42 7.80 16 12 N -0.62 -29.22 3.38 -697.71 -2.35 -31.57 16 13 C -0.24 -12.74 10.25 84.03 0.86 -11.88 16 14 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 15 C -0.05 -2.70 5.48 84.86 0.47 -2.24 16 16 N -0.94 -50.43 10.16 21.65 0.22 -50.21 16 17 Si 0.97 43.27 29.55 68.60 2.03 45.30 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 21 C 0.14 5.41 6.62 86.58 0.57 5.99 16 22 C -0.10 -2.77 4.09 -9.41 -0.04 -2.81 16 23 H 0.13 3.00 8.14 -2.38 -0.02 2.99 16 24 C 0.13 3.52 6.02 86.66 0.52 4.04 16 25 C 0.03 1.05 6.89 43.52 0.30 1.35 16 26 C 0.35 9.84 5.69 71.24 0.41 10.25 16 27 F -0.20 -5.67 17.27 44.97 0.78 -4.89 16 28 F -0.18 -5.87 13.48 44.97 0.61 -5.26 16 29 N -0.28 -7.98 12.43 -46.68 -0.58 -8.56 16 30 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.22 4.49 4.44 -2.91 -0.01 4.48 16 34 H 0.06 1.97 6.01 -2.39 -0.01 1.95 16 35 H 0.09 1.96 7.10 -2.38 -0.02 1.94 16 36 H 0.07 3.37 5.83 -2.39 -0.01 3.36 16 37 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.25 13.00 8.31 -92.71 -0.77 12.23 16 39 H 0.01 0.44 7.47 -2.39 -0.02 0.42 16 40 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.06 1.95 7.78 -2.39 -0.02 1.93 16 43 H 0.16 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -72.14 350.01 4.22 -67.92 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.06 Total: 8.76 kcal Atomic # 6 Polarization: 24.00 SS G_CDS: 6.70 Total: 30.71 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -6.90 Total: -120.80 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 9 Polarization: -11.53 SS G_CDS: 1.38 Total: -10.15 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -72.14 4.22 -67.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048866998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.839 kcal (2) G-P(sol) polarization free energy of solvation -72.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds