Wall clock time and date at job start Sat Apr 11 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28438 * 125.19473 * 2 1 4 4 C 1.30860 * 110.92965 * 180.28041 * 3 2 1 5 5 C 1.50706 * 126.06929 * 179.75093 * 4 3 2 6 6 F 1.39899 * 109.47150 * 119.95630 * 5 4 3 7 7 F 1.39904 * 109.46605 * 239.95639 * 5 4 3 8 8 C 1.39672 * 107.86406 * 359.70757 * 4 3 2 9 9 C 1.36604 * 125.18747 * 179.78369 * 2 1 3 10 10 C 1.47159 * 126.88345 * 359.97438 * 9 2 1 11 11 O 1.21626 * 120.00401 * 353.40109 * 10 9 2 12 12 N 1.34778 * 120.00007 * 173.39951 * 10 9 2 13 13 C 1.46659 * 125.33755 * 174.73564 * 12 10 9 14 14 C 1.53669 * 107.97101 * 179.29064 * 13 12 10 15 15 H 1.08997 * 113.31896 * 106.33132 * 14 13 12 16 16 C 1.53982 * 109.29863 * 233.06023 * 14 13 12 17 17 N 1.46762 * 106.67643 * 82.34277 * 16 14 13 18 18 C 1.36940 * 125.33359 * 198.42783 * 17 16 14 19 19 H 1.08002 * 119.99221 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00147 * 0.02924 * 18 17 16 21 21 N 1.31614 * 120.00048 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99877 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47063 * 59.99872 * 22 20 18 24 24 H 1.48496 * 109.47061 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47534 * 300.00100 * 22 20 18 26 26 C 1.46660 * 109.32839 * 18.45478 * 17 16 14 27 27 C 1.53676 * 107.97271 * 359.28943 * 26 17 16 28 28 H 1.08997 * 112.77279 * 106.01936 * 27 26 17 29 29 C 1.46760 * 125.33194 * 354.73311 * 12 10 9 30 30 H 1.08999 * 109.47291 * 264.54076 * 1 2 3 31 31 H 1.08992 * 109.47196 * 24.54005 * 1 2 3 32 32 H 1.09005 * 109.47596 * 144.54110 * 1 2 3 33 33 H 1.08996 * 109.47271 * 359.95058 * 5 4 3 34 34 H 1.08000 * 127.32428 * 180.02562 * 8 4 3 35 35 H 1.09003 * 109.76279 * 59.66210 * 13 12 10 36 36 H 1.08997 * 109.76624 * 298.91992 * 13 12 10 37 37 H 1.09003 * 110.01625 * 323.04050 * 16 14 13 38 38 H 1.09001 * 110.02233 * 201.64686 * 16 14 13 39 39 H 0.97004 * 120.00433 * 180.02562 * 21 20 18 40 40 H 1.09009 * 109.76156 * 239.65979 * 26 17 16 41 41 H 1.08994 * 109.76797 * 118.91942 * 26 17 16 42 42 H 1.09003 * 110.01394 * 79.14836 * 29 12 10 43 43 H 1.08994 * 110.01841 * 317.75917 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4735 0.7271 -0.0060 5 6 4.6336 1.6891 -0.0132 6 9 5.4187 1.4814 1.1259 7 9 5.4082 1.4768 -1.1587 8 6 3.5612 -0.6668 -0.0035 9 6 2.2522 -1.1164 0.0042 10 6 1.7992 -2.5165 0.0100 11 8 0.6165 -2.7726 0.1325 12 7 2.6948 -3.5152 -0.1204 13 6 2.3900 -4.9463 -0.0215 14 6 3.6943 -5.7258 -0.2507 15 1 4.1031 -6.1606 0.6614 16 6 3.4755 -6.7684 -1.3625 17 7 3.6295 -6.0611 -2.6393 18 6 3.1767 -6.5080 -3.8519 19 1 3.3381 -5.9154 -4.7403 20 6 2.5101 -7.7225 -3.9392 21 7 2.3138 -8.4447 -2.8566 22 14 1.8918 -8.3317 -5.5932 23 1 3.0383 -8.4839 -6.5248 24 1 1.2198 -9.6442 -5.4175 25 1 0.9264 -7.3516 -6.1524 26 6 4.3450 -4.8010 -2.4129 27 6 4.6481 -4.6911 -0.9103 28 1 5.6977 -4.8704 -0.6774 29 6 4.1280 -3.3408 -0.3839 30 1 -0.3634 -0.0978 1.0230 31 1 -0.3633 0.9348 -0.4268 32 1 -0.3634 -0.8371 -0.5962 33 1 4.2573 2.7121 -0.0136 34 1 4.4594 -1.2664 -0.0065 35 1 1.6582 -5.2207 -0.7813 36 1 1.9952 -5.1715 0.9692 37 1 2.4726 -7.1888 -1.2876 38 1 4.2197 -7.5608 -1.2829 39 1 1.8483 -9.2936 -2.9176 40 1 3.7227 -3.9625 -2.7258 41 1 5.2770 -4.7997 -2.9780 42 1 4.6469 -3.0746 0.5370 43 1 4.2777 -2.5649 -1.1346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048933488.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:31 Heat of formation + Delta-G solvation = -7.909166 kcal Electronic energy + Delta-G solvation = -30402.126016 eV Core-core repulsion = 25928.359837 eV Total energy + Delta-G solvation = -4473.766179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.20652 -47.21854 -42.94322 -40.19610 -38.19363 -35.23700 -33.96644 -32.49901 -31.53629 -29.96847 -29.73069 -28.94685 -26.03823 -25.67955 -25.33874 -23.84306 -22.17468 -21.36114 -20.10537 -19.69819 -19.46489 -17.68010 -17.55683 -17.53147 -16.76407 -16.60716 -16.39536 -16.37604 -15.84262 -15.10946 -14.70674 -14.47683 -14.12968 -14.09974 -13.64917 -13.58555 -13.22934 -13.19364 -13.07885 -13.02815 -12.81759 -12.64503 -12.17212 -11.96006 -11.79045 -11.63774 -11.43293 -11.13102 -11.00667 -10.82657 -10.44861 -10.18921 -10.09012 -10.04445 -9.88230 -9.65527 -9.63155 -9.36706 -8.68093 -8.49506 -6.87895 -5.72541 -3.11000 1.02315 1.91288 1.94696 2.93395 3.09726 3.38815 3.40760 3.43359 3.44261 3.86228 4.10164 4.35949 4.44743 4.57039 4.67850 4.78206 4.91218 4.95824 5.00025 5.11812 5.13623 5.25938 5.35589 5.40097 5.46739 5.56655 5.63684 5.72728 5.87619 5.92100 6.05403 6.22309 6.28014 6.32209 6.41324 6.60541 6.66293 6.76738 7.37356 7.47762 7.55577 7.58672 7.76934 8.04495 8.27818 9.18392 9.78747 10.41269 11.34150 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.003103 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.650024 B = 9021.253480 C = 9469.794783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.245 5.245 3 N -0.244 5.244 4 C -0.062 4.062 5 C 0.365 3.635 6 F -0.192 7.192 7 F -0.190 7.190 8 C -0.161 4.161 9 C -0.020 4.020 10 C 0.600 3.400 11 O -0.541 6.541 12 N -0.587 5.587 13 C 0.124 3.876 14 C -0.124 4.124 15 H 0.091 0.909 16 C 0.170 3.830 17 N -0.600 5.600 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.923 5.923 22 Si 0.914 3.086 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.143 3.857 27 C -0.109 4.109 28 H 0.101 0.899 29 C 0.099 3.901 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.127 0.873 34 H 0.177 0.823 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.021 0.979 39 H 0.253 0.747 40 H 0.022 0.978 41 H 0.024 0.976 42 H 0.070 0.930 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 18.038 9.521 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.034 5.034 3 N -0.079 5.079 4 C -0.219 4.219 5 C 0.309 3.691 6 F -0.174 7.174 7 F -0.172 7.172 8 C -0.190 4.190 9 C -0.147 4.147 10 C 0.387 3.613 11 O -0.419 6.419 12 N -0.318 5.318 13 C 0.003 3.997 14 C -0.144 4.144 15 H 0.109 0.891 16 C 0.044 3.956 17 N -0.326 5.326 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.212 1.212 26 C 0.017 3.983 27 C -0.129 4.129 28 H 0.119 0.881 29 C -0.024 4.024 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.144 0.856 34 H 0.194 0.806 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.039 0.961 39 H 0.064 0.936 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.088 0.912 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.194 18.635 9.497 20.950 hybrid contribution 0.358 -1.050 -0.865 1.406 sum 1.552 17.585 8.632 19.651 Atomic orbital electron populations 1.22425 0.71490 1.05916 1.05435 1.45615 1.08173 1.01431 1.48138 1.72957 1.02744 1.13974 1.18254 1.22209 0.92536 0.94622 1.12505 1.19082 0.80457 0.98101 0.71453 1.93031 1.76375 1.96630 1.51317 1.93046 1.76856 1.96557 1.50711 1.22565 0.96964 0.93918 1.05509 1.21439 0.90783 0.89977 1.12510 1.16311 0.84922 0.82117 0.77986 1.90805 1.15597 1.84033 1.51467 1.47855 1.08656 1.06780 1.68530 1.21975 0.98841 0.77060 1.01818 1.23231 0.93131 0.97522 1.00487 0.89086 1.21486 1.03066 0.89944 0.81059 1.44194 1.65449 1.18447 1.04518 1.19000 1.29726 1.02041 0.84685 0.90547 1.24767 1.00934 0.97087 0.97535 1.69830 1.46963 1.14273 1.26007 0.86164 0.78592 0.77904 0.82907 1.21171 1.21529 1.21178 1.21150 0.95137 0.90500 0.91502 1.22879 0.99687 0.92971 0.97337 0.88057 1.22451 0.80689 0.99166 1.00118 0.89113 0.88404 0.87110 0.85562 0.80588 0.89636 0.91891 0.88455 0.96101 0.93598 0.95994 0.95803 0.91163 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.58 59.85 0.63 1.47 16 2 N -0.25 -3.13 3.75 -63.88 -0.24 -3.37 16 3 N -0.24 -3.01 11.90 33.64 0.40 -2.61 16 4 C -0.06 -0.74 6.65 -82.47 -0.55 -1.29 16 5 C 0.36 3.40 5.80 36.01 0.21 3.61 16 6 F -0.19 -1.97 17.32 2.25 0.04 -1.93 16 7 F -0.19 -2.03 17.32 2.25 0.04 -1.99 16 8 C -0.16 -2.02 9.24 -38.98 -0.36 -2.38 16 9 C -0.02 -0.27 6.89 -82.06 -0.57 -0.84 16 10 C 0.60 9.74 7.80 -12.64 -0.10 9.64 16 11 O -0.54 -9.95 15.24 5.25 0.08 -9.87 16 12 N -0.59 -9.24 3.31 -173.70 -0.57 -9.81 16 13 C 0.12 2.15 6.24 -3.61 -0.02 2.13 16 14 C -0.12 -2.09 4.09 -88.48 -0.36 -2.45 16 15 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 16 C 0.17 3.83 4.84 -3.39 -0.02 3.82 16 17 N -0.60 -14.67 3.38 -171.87 -0.58 -15.25 16 18 C -0.23 -6.18 10.25 -15.06 -0.15 -6.33 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 21 N -0.92 -26.16 10.16 55.49 0.56 -25.60 16 22 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.14 2.81 6.63 -3.60 -0.02 2.79 16 27 C -0.11 -1.67 4.09 -88.47 -0.36 -2.03 16 28 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 29 C 0.10 1.30 4.24 -3.39 -0.01 1.28 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 1.20 6.81 -51.93 -0.35 0.85 16 33 H 0.13 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.18 1.90 4.87 -52.49 -0.26 1.64 16 35 H 0.09 1.80 7.47 -51.93 -0.39 1.41 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 2.50 5.83 -51.93 -0.30 2.20 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 40 H 0.02 0.45 7.47 -51.92 -0.39 0.06 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.74 7.48 -51.93 -0.39 0.36 16 43 H 0.08 1.03 5.93 -51.93 -0.31 0.72 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -32.33 353.20 -7.07 -39.39 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.31 Total: -0.26 kcal Atomic # 6 Polarization: 10.91 SS G_CDS: -1.78 Total: 9.13 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.43 Total: -56.64 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.87 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.08 Total: -3.93 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.33 -7.07 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048933488.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.485 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds