Wall clock time and date at job start Sat Apr 11 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28438 * 125.19473 * 2 1 4 4 C 1.30860 * 110.92965 * 180.28041 * 3 2 1 5 5 C 1.50706 * 126.06929 * 179.75093 * 4 3 2 6 6 F 1.39899 * 109.47150 * 119.95630 * 5 4 3 7 7 F 1.39904 * 109.46605 * 239.95639 * 5 4 3 8 8 C 1.39672 * 107.86406 * 359.70757 * 4 3 2 9 9 C 1.36604 * 125.18747 * 179.78369 * 2 1 3 10 10 C 1.47159 * 126.88345 * 359.97438 * 9 2 1 11 11 O 1.21626 * 120.00401 * 353.40109 * 10 9 2 12 12 N 1.34778 * 120.00007 * 173.39951 * 10 9 2 13 13 C 1.46659 * 125.33755 * 174.73564 * 12 10 9 14 14 C 1.53669 * 107.97101 * 179.29064 * 13 12 10 15 15 H 1.08997 * 113.31896 * 106.33132 * 14 13 12 16 16 C 1.53982 * 109.29863 * 233.06023 * 14 13 12 17 17 N 1.46762 * 106.67643 * 82.34277 * 16 14 13 18 18 C 1.36940 * 125.33359 * 198.42783 * 17 16 14 19 19 H 1.08002 * 119.99221 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00147 * 0.02924 * 18 17 16 21 21 N 1.31614 * 120.00048 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99877 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47063 * 59.99872 * 22 20 18 24 24 H 1.48496 * 109.47061 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47534 * 300.00100 * 22 20 18 26 26 C 1.46660 * 109.32839 * 18.45478 * 17 16 14 27 27 C 1.53676 * 107.97271 * 359.28943 * 26 17 16 28 28 H 1.08997 * 112.77279 * 106.01936 * 27 26 17 29 29 C 1.46760 * 125.33194 * 354.73311 * 12 10 9 30 30 H 1.08999 * 109.47291 * 264.54076 * 1 2 3 31 31 H 1.08992 * 109.47196 * 24.54005 * 1 2 3 32 32 H 1.09005 * 109.47596 * 144.54110 * 1 2 3 33 33 H 1.08996 * 109.47271 * 359.95058 * 5 4 3 34 34 H 1.08000 * 127.32428 * 180.02562 * 8 4 3 35 35 H 1.09003 * 109.76279 * 59.66210 * 13 12 10 36 36 H 1.08997 * 109.76624 * 298.91992 * 13 12 10 37 37 H 1.09003 * 110.01625 * 323.04050 * 16 14 13 38 38 H 1.09001 * 110.02233 * 201.64686 * 16 14 13 39 39 H 0.97004 * 120.00433 * 180.02562 * 21 20 18 40 40 H 1.09009 * 109.76156 * 239.65979 * 26 17 16 41 41 H 1.08994 * 109.76797 * 118.91942 * 26 17 16 42 42 H 1.09003 * 110.01394 * 79.14836 * 29 12 10 43 43 H 1.08994 * 110.01841 * 317.75917 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0496 0.0000 4 6 3.4735 0.7271 -0.0060 5 6 4.6336 1.6891 -0.0132 6 9 5.4187 1.4814 1.1259 7 9 5.4082 1.4768 -1.1587 8 6 3.5612 -0.6668 -0.0035 9 6 2.2522 -1.1164 0.0042 10 6 1.7992 -2.5165 0.0100 11 8 0.6165 -2.7726 0.1325 12 7 2.6948 -3.5152 -0.1204 13 6 2.3900 -4.9463 -0.0215 14 6 3.6943 -5.7258 -0.2507 15 1 4.1031 -6.1606 0.6614 16 6 3.4755 -6.7684 -1.3625 17 7 3.6295 -6.0611 -2.6393 18 6 3.1767 -6.5080 -3.8519 19 1 3.3381 -5.9154 -4.7403 20 6 2.5101 -7.7225 -3.9392 21 7 2.3138 -8.4447 -2.8566 22 14 1.8918 -8.3317 -5.5932 23 1 3.0383 -8.4839 -6.5248 24 1 1.2198 -9.6442 -5.4175 25 1 0.9264 -7.3516 -6.1524 26 6 4.3450 -4.8010 -2.4129 27 6 4.6481 -4.6911 -0.9103 28 1 5.6977 -4.8704 -0.6774 29 6 4.1280 -3.3408 -0.3839 30 1 -0.3634 -0.0978 1.0230 31 1 -0.3633 0.9348 -0.4268 32 1 -0.3634 -0.8371 -0.5962 33 1 4.2573 2.7121 -0.0136 34 1 4.4594 -1.2664 -0.0065 35 1 1.6582 -5.2207 -0.7813 36 1 1.9952 -5.1715 0.9692 37 1 2.4726 -7.1888 -1.2876 38 1 4.2197 -7.5608 -1.2829 39 1 1.8483 -9.2936 -2.9176 40 1 3.7227 -3.9625 -2.7258 41 1 5.2770 -4.7997 -2.9780 42 1 4.6469 -3.0746 0.5370 43 1 4.2777 -2.5649 -1.1346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048933488.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:31 Heat of formation + Delta-G solvation = -28.853582 kcal Electronic energy + Delta-G solvation = -30403.034235 eV Core-core repulsion = 25928.359837 eV Total energy + Delta-G solvation = -4474.674397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.94533 -47.96252 -43.89116 -41.51371 -39.57850 -36.78721 -34.92440 -34.17535 -32.81718 -31.37592 -31.29166 -29.73014 -27.63258 -27.11987 -26.34816 -25.25344 -23.39429 -22.38872 -21.77097 -20.89149 -20.65451 -19.11939 -18.39880 -18.33180 -18.25221 -17.68055 -17.52127 -17.23710 -17.04264 -16.77771 -16.12132 -15.76545 -15.60293 -15.02793 -14.87642 -14.60692 -14.44580 -14.33344 -14.23676 -13.95766 -13.86016 -13.69094 -13.52756 -13.46729 -13.23999 -13.05098 -12.82029 -12.71566 -12.61795 -12.07255 -12.05057 -11.88431 -11.64680 -11.54574 -11.38739 -11.31003 -10.71812 -10.59924 -10.32165 -9.76705 -8.86679 -7.81590 -5.21278 -0.02107 1.00126 1.02896 1.44258 1.46584 1.52905 1.82441 1.93352 2.47985 2.57531 3.08593 3.20891 3.30389 3.36601 3.46502 3.67549 3.80539 3.86841 3.93932 4.02618 4.06741 4.18983 4.21726 4.23773 4.30409 4.44068 4.51433 4.54852 4.58227 4.76827 4.83142 4.88510 5.01287 5.03638 5.09786 5.19299 5.33876 5.36433 5.46547 5.60231 5.82284 6.26559 6.28861 6.59668 6.82110 7.12162 7.80686 8.40522 9.22420 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.003103 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.650024 B = 9021.253480 C = 9469.794783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.250 5.250 3 N -0.241 5.241 4 C -0.069 4.069 5 C 0.368 3.632 6 F -0.196 7.196 7 F -0.198 7.198 8 C -0.156 4.156 9 C -0.042 4.042 10 C 0.596 3.404 11 O -0.574 6.574 12 N -0.590 5.590 13 C 0.132 3.868 14 C -0.108 4.108 15 H 0.128 0.872 16 C 0.175 3.825 17 N -0.622 5.622 18 C -0.242 4.242 19 H 0.075 0.925 20 C -0.061 4.061 21 N -0.945 5.945 22 Si 0.974 3.026 23 H -0.276 1.276 24 H -0.292 1.292 25 H -0.283 1.283 26 C 0.136 3.864 27 C -0.094 4.094 28 H 0.139 0.861 29 C 0.101 3.899 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.162 0.838 34 H 0.195 0.805 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.058 0.942 38 H -0.003 1.003 39 H 0.247 0.753 40 H 0.011 0.989 41 H 0.030 0.970 42 H 0.113 0.887 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.613 20.356 10.428 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.039 5.039 3 N -0.077 5.077 4 C -0.225 4.225 5 C 0.313 3.687 6 F -0.178 7.178 7 F -0.179 7.179 8 C -0.184 4.184 9 C -0.169 4.169 10 C 0.385 3.615 11 O -0.455 6.455 12 N -0.321 5.321 13 C 0.010 3.990 14 C -0.128 4.128 15 H 0.146 0.854 16 C 0.049 3.951 17 N -0.348 5.348 18 C -0.372 4.372 19 H 0.093 0.907 20 C -0.254 4.254 21 N -0.594 5.594 22 Si 0.802 3.198 23 H -0.202 1.202 24 H -0.218 1.218 25 H -0.209 1.209 26 C 0.011 3.989 27 C -0.113 4.113 28 H 0.157 0.843 29 C -0.021 4.021 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.112 0.888 33 H 0.179 0.821 34 H 0.212 0.788 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.014 0.986 39 H 0.057 0.943 40 H 0.029 0.971 41 H 0.048 0.952 42 H 0.131 0.869 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.985 20.987 10.404 23.614 hybrid contribution -0.210 -1.728 -1.187 2.107 sum 2.775 19.259 9.217 21.530 Atomic orbital electron populations 1.22582 0.70342 1.06606 1.06079 1.45904 1.09018 1.01144 1.47842 1.72961 1.03105 1.13721 1.17934 1.22659 0.93041 0.94950 1.11885 1.19378 0.79435 0.99032 0.70881 1.93024 1.76442 1.96724 1.51578 1.93033 1.77016 1.96669 1.51215 1.22844 0.96791 0.94532 1.04205 1.21215 0.91825 0.89133 1.14736 1.16637 0.84515 0.83091 0.77287 1.90782 1.17023 1.84700 1.52965 1.47896 1.09906 1.05870 1.68397 1.21696 0.98026 0.78482 1.00816 1.23090 0.93611 0.96173 0.99899 0.85409 1.21220 1.00003 0.91163 0.82686 1.44483 1.65895 1.20148 1.04287 1.19336 1.29555 1.02189 0.86077 0.90685 1.25539 1.01655 0.97570 1.00656 1.70080 1.47636 1.14175 1.27549 0.85222 0.78109 0.77002 0.79424 1.20240 1.21808 1.20910 1.21368 0.94387 0.87947 0.95172 1.22928 1.01334 0.93502 0.93544 0.84318 1.22660 0.79148 0.97977 1.02298 0.88033 0.85749 0.88839 0.82068 0.78819 0.94628 0.90556 0.92416 0.98551 0.94335 0.97077 0.95227 0.86910 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.52 10.58 127.77 1.35 2.88 16 2 N -0.25 -6.00 3.75 -356.02 -1.33 -7.34 16 3 N -0.24 -5.38 11.90 -47.49 -0.57 -5.95 16 4 C -0.07 -1.44 6.65 43.05 0.29 -1.15 16 5 C 0.37 5.64 5.80 71.24 0.41 6.05 16 6 F -0.20 -3.39 17.32 44.97 0.78 -2.61 16 7 F -0.20 -3.63 17.32 44.97 0.78 -2.86 16 8 C -0.16 -3.44 9.24 22.66 0.21 -3.23 16 9 C -0.04 -1.11 6.89 40.79 0.28 -0.83 16 10 C 0.60 19.09 7.80 86.59 0.68 19.76 16 11 O -0.57 -21.64 15.24 -4.11 -0.06 -21.70 16 12 N -0.59 -17.83 3.31 -821.71 -2.72 -20.55 16 13 C 0.13 4.57 6.24 86.57 0.54 5.11 16 14 C -0.11 -3.50 4.09 -9.41 -0.04 -3.54 16 15 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 16 C 0.17 8.12 4.84 86.66 0.42 8.54 16 17 N -0.62 -31.12 3.38 -697.69 -2.35 -33.48 16 18 C -0.24 -13.61 10.25 84.03 0.86 -12.75 16 19 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.06 -3.47 5.48 84.86 0.47 -3.00 16 21 N -0.95 -55.87 10.16 21.65 0.22 -55.65 16 22 Si 0.97 46.07 29.55 68.60 2.03 48.09 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 C 0.14 5.25 6.63 86.58 0.57 5.83 16 27 C -0.09 -2.59 4.09 -9.40 -0.04 -2.63 16 28 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 29 C 0.10 2.30 4.24 86.66 0.37 2.67 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 2.08 6.81 -2.38 -0.02 2.06 16 33 H 0.16 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.19 3.38 4.87 -2.91 -0.01 3.37 16 35 H 0.04 1.58 7.47 -2.39 -0.02 1.56 16 36 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.06 3.14 5.83 -2.39 -0.01 3.13 16 38 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 40 H 0.01 0.46 7.47 -2.38 -0.02 0.44 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.11 1.75 7.48 -2.39 -0.02 1.73 16 43 H 0.09 1.97 5.93 -2.39 -0.01 1.95 16 Total: -1.00 -74.19 353.20 4.20 -69.99 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.06 Total: 8.36 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 6.37 Total: 23.70 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -6.75 Total: -122.97 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 1.56 Total: -5.46 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -74.19 4.20 -69.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048933488.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.137 kcal (2) G-P(sol) polarization free energy of solvation -74.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds