Wall clock time and date at job start Sat Apr 11 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28468 * 124.88202 * 2 1 4 4 C 1.31814 * 110.07177 * 179.97438 * 3 2 1 5 5 C 1.47706 * 126.51555 * 179.97438 * 4 3 2 6 6 O 1.21575 * 120.00205 * 180.02562 * 5 4 3 7 7 N 1.34778 * 120.00380 * 0.03083 * 5 4 3 8 8 C 1.46663 * 125.34114 * 179.97438 * 7 5 4 9 9 C 1.53730 * 107.94604 * 180.54496 * 8 7 5 10 10 H 1.09002 * 112.56437 * 139.71597 * 9 8 7 11 11 C 1.53686 * 109.34160 * 266.25584 * 9 8 7 12 12 N 1.46637 * 108.01164 * 127.55200 * 11 9 8 13 13 C 1.36935 * 125.32811 * 180.81414 * 12 11 9 14 14 H 1.08002 * 119.99979 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00216 * 0.02562 * 13 12 11 16 16 N 1.31622 * 120.00231 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00054 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46876 * 60.00129 * 17 15 13 19 19 H 1.48504 * 109.47239 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47090 * 300.00500 * 17 15 13 21 21 C 1.46744 * 109.34068 * 0.83782 * 12 11 9 22 22 C 1.53926 * 106.71845 * 341.65801 * 21 12 11 23 23 H 1.09004 * 113.00940 * 150.83664 * 22 21 12 24 24 C 1.46783 * 125.33723 * 359.69505 * 7 5 4 25 25 C 1.41496 * 106.96607 * 0.02562 * 4 3 2 26 26 C 1.35034 * 124.88692 * 179.97438 * 2 1 3 27 27 C 1.50702 * 126.38690 * 0.02830 * 26 2 1 28 28 F 1.39899 * 109.46733 * 299.94676 * 27 26 2 29 29 F 1.39900 * 109.47305 * 59.94269 * 27 26 2 30 30 H 1.08994 * 109.46809 * 90.03071 * 1 2 3 31 31 H 1.09002 * 109.46891 * 210.02241 * 1 2 3 32 32 H 1.08999 * 109.46998 * 330.02418 * 1 2 3 33 33 H 1.09007 * 109.77376 * 300.16767 * 8 7 5 34 34 H 1.09002 * 109.77374 * 60.92465 * 8 7 5 35 35 H 1.09007 * 109.76069 * 247.19800 * 11 9 8 36 36 H 1.09006 * 109.76006 * 7.90932 * 11 9 8 37 37 H 0.96991 * 120.00155 * 179.97438 * 16 15 13 38 38 H 1.09000 * 110.00926 * 222.34103 * 21 12 11 39 39 H 1.09002 * 110.00769 * 100.97444 * 21 12 11 40 40 H 1.09001 * 110.02255 * 280.77737 * 24 7 5 41 41 H 1.08999 * 110.02557 * 42.18340 * 24 7 5 42 42 H 1.07998 * 127.24946 * 179.97438 * 25 4 3 43 43 H 1.08996 * 109.47222 * 179.97438 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0539 0.0000 4 6 3.4741 0.7169 0.0006 5 6 4.6272 1.6399 0.0002 6 8 5.7597 1.1978 0.0003 7 7 4.4240 2.9723 -0.0001 8 6 5.4788 3.9913 0.0000 9 6 4.8034 5.3722 0.0134 10 1 5.3135 6.0810 0.6658 11 6 4.6558 5.8807 -1.4294 12 7 3.2537 6.2568 -1.6363 13 6 2.7277 6.7406 -2.8044 14 1 1.6788 6.9916 -2.8612 15 6 3.5427 6.9084 -3.9155 16 7 4.8209 6.6020 -3.8465 17 14 2.8251 7.5677 -5.5092 18 1 2.2563 8.9191 -5.2741 19 1 3.8945 7.6520 -6.5362 20 1 1.7538 6.6556 -5.9844 21 6 2.5025 6.0341 -0.3955 22 6 3.3463 5.0790 0.4676 23 1 3.1918 5.2222 1.5371 24 6 3.1124 3.6311 -0.0066 25 6 3.5273 -0.6970 0.0003 26 6 2.2374 -1.1077 0.0005 27 6 1.7535 -2.5349 0.0005 28 9 0.9798 -2.7649 1.1432 29 9 0.9786 -2.7647 -1.1413 30 1 -0.3633 -0.0006 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5135 33 1 6.1019 3.8770 0.8872 34 1 6.0907 3.8889 -0.8962 35 1 5.2967 6.7492 -1.5814 36 1 4.9327 5.0914 -2.1284 37 1 5.3902 6.7189 -4.6230 38 1 1.5375 5.5798 -0.6201 39 1 2.3574 6.9795 0.1273 40 1 2.6981 3.6280 -1.0148 41 1 2.4347 3.1201 0.6773 42 1 4.4109 -1.3179 0.0003 43 1 2.6101 -3.2089 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048936903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:34 Heat of formation + Delta-G solvation = -11.246880 kcal Electronic energy + Delta-G solvation = -30221.202496 eV Core-core repulsion = 25747.291583 eV Total energy + Delta-G solvation = -4473.910913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.53426 -47.51489 -42.95386 -39.95902 -38.04302 -34.90993 -33.78048 -32.49197 -32.07547 -30.34261 -29.38295 -27.87561 -26.50178 -25.50832 -25.39245 -23.73457 -22.16649 -21.27488 -20.04687 -19.47426 -19.20234 -17.89252 -17.84516 -17.69926 -16.95610 -16.65070 -16.47964 -15.83665 -15.42275 -15.11541 -14.65958 -14.41807 -14.26237 -14.17163 -13.87627 -13.68338 -13.29975 -13.20109 -13.13458 -12.91415 -12.70348 -12.60535 -12.10764 -12.01249 -11.92667 -11.47503 -11.39703 -10.95852 -10.88417 -10.76152 -10.39674 -10.10806 -10.04345 -9.91641 -9.79480 -9.67187 -9.59310 -9.35216 -8.59069 -8.25999 -6.82225 -5.71248 -3.04929 1.32170 1.68802 2.05865 2.96433 3.30895 3.40440 3.44699 3.46319 3.47641 3.62029 3.93917 4.20775 4.46236 4.49939 4.60831 4.76827 4.88113 4.99701 5.05886 5.09891 5.22702 5.34431 5.38104 5.52155 5.64570 5.72754 5.77433 5.94288 6.04479 6.08877 6.24037 6.29539 6.34435 6.47266 6.59863 6.63588 6.68023 6.86120 7.54212 7.56836 7.60198 7.78009 7.82840 8.27714 8.33919 9.22871 9.83512 10.47397 11.40142 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.013798 B = 0.003101 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.800455 B = 9026.225431 C = 9849.744793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.260 5.260 3 N -0.227 5.227 4 C -0.007 4.007 5 C 0.613 3.387 6 O -0.540 6.540 7 N -0.592 5.592 8 C 0.121 3.879 9 C -0.123 4.123 10 H 0.091 0.909 11 C 0.185 3.815 12 N -0.602 5.602 13 C -0.231 4.231 14 H 0.077 0.923 15 C -0.006 4.006 16 N -0.921 5.921 17 Si 0.912 3.088 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.286 1.286 21 C 0.147 3.853 22 C -0.113 4.113 23 H 0.088 0.912 24 C 0.118 3.882 25 C -0.130 4.130 26 C -0.081 4.081 27 C 0.349 3.651 28 F -0.196 7.196 29 F -0.194 7.194 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.253 0.747 38 H 0.037 0.963 39 H 0.019 0.981 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.172 0.828 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.123 -16.813 11.683 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.049 5.049 3 N -0.064 5.064 4 C -0.165 4.165 5 C 0.399 3.601 6 O -0.417 6.417 7 N -0.323 5.323 8 C -0.001 4.001 9 C -0.143 4.143 10 H 0.110 0.890 11 C 0.060 3.940 12 N -0.328 5.328 13 C -0.359 4.359 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.568 5.568 17 Si 0.742 3.258 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.020 3.980 22 C -0.133 4.133 23 H 0.107 0.893 24 C -0.004 4.004 25 C -0.159 4.159 26 C -0.206 4.206 27 C 0.294 3.706 28 F -0.178 7.178 29 F -0.176 7.176 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.037 0.963 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.189 0.811 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.308 -16.151 11.445 21.101 hybrid contribution -0.126 -0.274 -0.967 1.013 sum -7.434 -16.425 10.478 20.853 Atomic orbital electron populations 1.22369 0.72544 1.05942 1.05266 1.45417 1.08061 1.02100 1.49341 1.73849 1.03198 1.12474 1.16884 1.21910 0.90841 0.93619 1.10158 1.16346 0.86259 0.80171 0.77336 1.90783 1.22383 1.76482 1.52045 1.48056 1.09448 1.04339 1.70485 1.21881 0.89842 0.86441 1.01921 1.23166 0.94756 0.94951 1.01437 0.89035 1.21115 0.86254 0.98909 0.87719 1.44192 1.04744 1.76275 1.07633 1.18978 0.93773 1.35961 0.87180 0.90484 1.24793 0.95787 1.01552 0.98118 1.69942 1.03860 1.53580 1.29396 0.86209 0.77692 0.78730 0.83166 1.21163 1.21596 1.21247 1.21148 0.94251 0.94830 0.87784 1.22979 0.96680 0.94454 0.99196 0.89328 1.22215 0.84056 0.91686 1.02482 1.21528 0.95703 0.94034 1.04635 1.21720 0.92479 0.90460 1.15922 1.19828 0.88175 0.91234 0.71385 1.93029 1.78143 1.95400 1.51185 1.93053 1.78006 1.95414 1.51085 0.88916 0.88516 0.87690 0.92011 0.90583 0.93720 0.93082 0.93658 0.94480 0.96302 0.90294 0.90469 0.81071 0.84113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 11.04 59.85 0.66 1.25 16 2 N -0.26 -3.00 3.70 -63.85 -0.24 -3.24 16 3 N -0.23 -3.27 9.17 33.42 0.31 -2.97 16 4 C -0.01 -0.11 6.96 -82.77 -0.58 -0.68 16 5 C 0.61 11.08 7.84 -12.39 -0.10 10.98 16 6 O -0.54 -10.84 17.23 5.30 0.09 -10.75 16 7 N -0.59 -10.60 3.31 -173.33 -0.57 -11.17 16 8 C 0.12 2.15 6.23 -3.57 -0.02 2.13 16 9 C -0.12 -2.24 4.02 -88.60 -0.36 -2.60 16 10 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 11 C 0.18 4.39 4.75 -3.61 -0.02 4.37 16 12 N -0.60 -14.98 3.37 -171.93 -0.58 -15.56 16 13 C -0.23 -6.34 10.25 -15.06 -0.15 -6.49 16 14 H 0.08 2.04 7.83 -52.49 -0.41 1.62 16 15 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 16 N -0.92 -26.93 10.25 55.49 0.57 -26.37 16 17 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.15 2.90 6.37 -3.43 -0.02 2.88 16 22 C -0.11 -1.90 4.19 -88.26 -0.37 -2.27 16 23 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 24 C 0.12 2.02 5.20 -3.29 -0.02 2.00 16 25 C -0.13 -1.59 10.71 -39.36 -0.42 -2.02 16 26 C -0.08 -0.85 6.35 -82.20 -0.52 -1.38 16 27 C 0.35 2.54 5.27 36.01 0.19 2.73 16 28 F -0.20 -1.58 16.31 2.25 0.04 -1.54 16 29 F -0.19 -1.69 17.25 2.25 0.04 -1.65 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.10 0.57 6.84 -51.93 -0.36 0.21 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 34 H 0.08 1.48 7.44 -51.93 -0.39 1.09 16 35 H 0.04 1.18 7.46 -51.92 -0.39 0.79 16 36 H 0.05 1.38 6.51 -51.93 -0.34 1.04 16 37 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.04 0.72 7.94 -51.93 -0.41 0.30 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 1.58 7.72 -51.93 -0.40 1.18 16 41 H 0.08 1.19 6.48 -51.93 -0.34 0.85 16 42 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.14 0.52 8.11 -51.93 -0.42 0.10 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -34.10 357.67 -7.34 -41.44 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.54 Total: -1.29 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -1.82 Total: 10.65 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.51 Total: -59.30 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.10 -7.34 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048936903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.197 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds