Wall clock time and date at job start Sat Apr 11 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39935 * 125.75496 * 2 1 4 4 C 1.30451 * 108.89648 * 180.02562 * 3 2 1 5 5 C 1.41288 * 108.02113 * 359.97438 * 4 3 2 6 6 C 1.47430 * 126.41159 * 179.97438 * 5 4 3 7 7 O 1.21607 * 119.99654 * 184.61956 * 6 5 4 8 8 N 1.34777 * 120.00154 * 4.62168 * 6 5 4 9 9 C 1.46657 * 125.33096 * 355.37772 * 8 6 5 10 10 C 1.53681 * 107.96744 * 179.29115 * 9 8 6 11 11 H 1.08997 * 113.31373 * 106.33023 * 10 9 8 12 12 C 1.53979 * 109.29779 * 233.05938 * 10 9 8 13 13 N 1.46753 * 106.67514 * 82.34468 * 12 10 9 14 14 C 1.36938 * 125.33305 * 198.43141 * 13 12 10 15 15 H 1.08007 * 120.00007 * 180.02562 * 14 13 12 16 16 C 1.38807 * 120.00379 * 0.02562 * 14 13 12 17 17 N 1.31625 * 119.99919 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00279 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47229 * 60.00103 * 18 16 14 20 20 H 1.48507 * 109.47020 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47070 * 299.99847 * 18 16 14 22 22 C 1.46658 * 109.33507 * 18.44760 * 13 12 10 23 23 C 1.53679 * 107.96606 * 359.29267 * 22 13 12 24 24 H 1.09006 * 112.77210 * 106.01343 * 23 22 13 25 25 C 1.46754 * 125.33324 * 175.37788 * 8 6 5 26 26 C 1.34256 * 125.75031 * 180.32847 * 2 1 3 27 27 C 1.50703 * 126.29523 * 359.96311 * 26 2 1 28 28 F 1.39901 * 109.46713 * 30.17706 * 27 26 2 29 29 F 1.39896 * 109.46935 * 150.17824 * 27 26 2 30 30 H 1.08996 * 109.46712 * 89.97579 * 1 2 3 31 31 H 1.08994 * 109.47401 * 209.97649 * 1 2 3 32 32 H 1.09000 * 109.46827 * 329.97989 * 1 2 3 33 33 H 1.07992 * 125.98430 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.77188 * 59.66725 * 9 8 6 35 35 H 1.08998 * 109.77132 * 298.92109 * 9 8 6 36 36 H 1.09008 * 110.01695 * 323.04305 * 12 10 9 37 37 H 1.08995 * 110.02079 * 201.65368 * 12 10 9 38 38 H 0.96998 * 120.00255 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.77230 * 239.66542 * 22 13 12 40 40 H 1.08999 * 109.76573 * 118.91608 * 22 13 12 41 41 H 1.08997 * 110.01591 * 79.14762 * 25 8 6 42 42 H 1.08990 * 110.02027 * 317.75259 * 25 8 6 43 43 H 1.08993 * 109.46748 * 270.17717 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2827 1.1356 0.0000 4 6 3.5312 0.7573 -0.0006 5 6 3.5598 -0.6553 -0.0003 6 6 4.7638 -1.5062 -0.0013 7 8 4.6544 -2.7144 -0.0858 8 7 5.9857 -0.9450 0.0915 9 6 6.2586 0.4959 0.1021 10 6 7.7770 0.6898 0.2394 11 1 8.2558 1.0138 -0.6846 12 6 8.0647 1.6320 1.4229 13 7 8.0220 0.8084 2.6368 14 6 7.8693 1.2843 3.9117 15 1 7.8501 0.5982 4.7456 16 6 7.7391 2.6485 4.1324 17 7 7.7620 3.4848 3.1162 18 14 7.5315 3.2978 5.8716 19 1 8.7111 2.9134 6.6876 20 1 7.4141 4.7778 5.8368 21 1 6.3035 2.7184 6.4730 22 6 8.1689 -0.6041 2.2707 23 6 8.2949 -0.6868 0.7413 24 1 9.3112 -0.9049 0.4128 25 6 7.2514 -1.6801 0.1977 26 6 2.2494 -1.0896 -0.0062 27 6 1.7849 -2.5232 -0.0137 28 9 0.5561 -2.6117 -0.6766 29 9 2.7294 -3.3160 -0.6744 30 1 -0.3632 0.0004 -1.0276 31 1 -0.3634 -0.8901 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 4.3918 1.4096 -0.0003 34 1 5.7498 0.9614 0.9462 35 1 5.9126 0.9436 -0.8295 36 1 7.3036 2.4107 1.4734 37 1 9.0515 2.0809 1.3110 38 1 7.6707 4.4380 3.2703 39 1 7.2928 -1.1632 2.5991 40 1 9.0645 -1.0145 2.7370 41 1 7.5565 -2.0416 -0.7843 42 1 7.1397 -2.5178 0.8860 43 1 1.6704 -2.8733 1.0121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049165451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:37 Heat of formation + Delta-G solvation = -1.358234 kcal Electronic energy + Delta-G solvation = -30995.318310 eV Core-core repulsion = 26521.836201 eV Total energy + Delta-G solvation = -4473.482110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.18326 -47.11454 -41.62621 -39.92282 -37.90203 -34.93961 -33.77411 -32.23757 -31.50275 -30.20235 -29.83523 -27.51416 -26.38203 -25.58595 -25.34277 -23.46872 -21.71563 -21.06621 -20.01491 -19.40157 -19.36310 -17.82823 -17.63145 -17.20110 -16.94271 -16.50994 -16.02949 -15.60192 -15.19434 -14.96365 -14.77117 -14.32515 -14.17110 -13.87752 -13.70715 -13.47819 -13.28982 -13.01168 -12.99405 -12.80134 -12.64867 -12.49893 -12.03365 -11.87961 -11.65163 -11.56561 -11.29722 -11.04589 -10.97675 -10.81716 -10.38035 -10.17500 -9.98955 -9.87356 -9.78071 -9.64173 -9.53504 -8.89809 -8.65851 -8.24934 -6.85805 -5.71955 -3.09760 1.08689 1.98862 2.11647 3.20130 3.30374 3.38580 3.43443 3.44066 3.52449 3.83255 4.17403 4.45956 4.47232 4.60074 4.71086 4.84279 4.91927 4.98686 5.06922 5.11174 5.24188 5.27786 5.45915 5.47736 5.50862 5.64935 5.78485 5.90452 5.96015 6.14169 6.22054 6.22919 6.36544 6.41491 6.57469 6.63971 6.73289 6.86416 7.30086 7.41618 7.58953 7.76616 7.80743 8.28476 8.44670 9.19867 9.80031 10.43311 11.34722 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.013175 B = 0.003778 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.791412 B = 7408.941484 C = 8572.855704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.343 5.343 3 N -0.277 5.277 4 C 0.076 3.924 5 C -0.240 4.240 6 C 0.600 3.400 7 O -0.537 6.537 8 N -0.600 5.600 9 C 0.104 3.896 10 C -0.124 4.124 11 H 0.090 0.910 12 C 0.170 3.830 13 N -0.600 5.600 14 C -0.224 4.224 15 H 0.076 0.924 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.912 3.088 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.143 3.857 23 C -0.110 4.110 24 H 0.098 0.902 25 C 0.124 3.876 26 C 0.057 3.943 27 C 0.341 3.659 28 F -0.203 7.203 29 F -0.150 7.150 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.211 0.789 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.020 0.980 38 H 0.253 0.747 39 H 0.024 0.976 40 H 0.022 0.978 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.486 -8.192 -9.059 16.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.122 5.122 3 N -0.096 5.096 4 C -0.110 4.110 5 C -0.255 4.255 6 C 0.388 3.612 7 O -0.415 6.415 8 N -0.333 5.333 9 C -0.018 4.018 10 C -0.144 4.144 11 H 0.108 0.892 12 C 0.044 3.956 13 N -0.327 5.327 14 C -0.352 4.352 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.572 5.572 18 Si 0.743 3.257 19 H -0.212 1.212 20 H -0.215 1.215 21 H -0.213 1.213 22 C 0.017 3.983 23 C -0.129 4.129 24 H 0.116 0.884 25 C 0.001 3.999 26 C -0.077 4.077 27 C 0.285 3.715 28 F -0.184 7.184 29 F -0.130 7.130 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.227 0.773 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.624 -7.660 -9.021 17.304 hybrid contribution 0.467 -0.123 0.854 0.981 sum -12.157 -7.783 -8.166 16.585 Atomic orbital electron populations 1.22144 0.73047 1.05175 1.04383 1.48335 1.07290 1.02740 1.53870 1.77336 1.02156 1.06307 1.23849 1.24988 0.95719 0.94061 0.96230 1.20030 0.92093 0.93958 1.19429 1.16740 0.81096 0.86592 0.76726 1.90846 1.85859 1.13653 1.51176 1.47907 1.05352 1.07982 1.72015 1.22333 0.97587 0.80852 1.01065 1.23206 0.92941 0.97216 1.01063 0.89181 1.21482 1.00974 0.91877 0.81228 1.44204 1.85687 0.99668 1.03093 1.19006 1.42404 0.90987 0.82785 0.90604 1.24740 1.02233 0.95775 0.97570 1.69826 1.57125 1.02087 1.28131 0.86191 0.77981 0.77790 0.83769 1.21214 1.21544 1.21260 1.21160 0.97860 0.88341 0.90931 1.22864 0.98051 0.94718 0.97301 0.88433 1.21825 0.82622 0.94990 1.00452 1.21888 0.91806 0.90628 1.03366 1.19687 0.73013 0.84598 0.94215 1.92997 1.44606 1.96761 1.84052 1.93248 1.63236 1.73623 1.82912 0.89761 0.88892 0.88417 0.77306 0.89667 0.91978 0.88516 0.96221 0.93646 0.95764 0.96013 0.92047 0.90753 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 10.38 59.85 0.62 1.34 16 2 N -0.34 -4.31 3.98 -63.34 -0.25 -4.56 16 3 N -0.28 -4.10 12.50 30.86 0.39 -3.71 16 4 C 0.08 1.14 10.41 -16.98 -0.18 0.96 16 5 C -0.24 -3.75 6.05 -105.06 -0.64 -4.38 16 6 C 0.60 10.31 7.80 -12.52 -0.10 10.21 16 7 O -0.54 -10.14 13.41 5.27 0.07 -10.07 16 8 N -0.60 -9.82 3.31 -173.60 -0.57 -10.39 16 9 C 0.10 1.65 4.40 -3.60 -0.02 1.63 16 10 C -0.12 -2.07 4.09 -88.48 -0.36 -2.43 16 11 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 12 C 0.17 3.74 4.84 -3.39 -0.02 3.72 16 13 N -0.60 -14.51 3.37 -171.89 -0.58 -15.09 16 14 C -0.22 -6.02 10.25 -15.06 -0.15 -6.17 16 15 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 16 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 17 N -0.92 -25.59 10.16 55.49 0.56 -25.02 16 18 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.14 2.87 6.63 -3.60 -0.02 2.85 16 23 C -0.11 -1.77 4.09 -88.48 -0.36 -2.13 16 24 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 25 C 0.12 1.89 6.02 -3.39 -0.02 1.87 16 26 C 0.06 0.77 6.74 -81.60 -0.55 0.22 16 27 C 0.34 3.93 5.44 36.01 0.20 4.13 16 28 F -0.20 -2.09 15.20 2.25 0.03 -2.06 16 29 F -0.15 -2.25 13.43 2.25 0.03 -2.22 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.54 6.98 -51.93 -0.36 0.18 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.21 2.93 4.48 -52.49 -0.24 2.70 16 34 H 0.09 1.54 6.00 -51.93 -0.31 1.23 16 35 H 0.06 0.84 7.09 -51.93 -0.37 0.47 16 36 H 0.10 2.37 5.83 -51.92 -0.30 2.07 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.02 0.51 7.47 -51.93 -0.39 0.12 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.18 7.77 -51.93 -0.40 0.77 16 43 H 0.13 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 345.74 15.07 5.21 5.21 Total: -1.00 -32.78 345.74 -7.13 -39.91 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.30 Total: -0.11 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -1.69 Total: 11.53 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.46 Total: -58.78 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.06 Total: -4.28 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.78 -7.13 -39.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049165451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.551 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds