Wall clock time and date at job start Sat Apr 11 2020 06:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00127 * 2 1 4 4 H 1.48502 * 109.47166 * 274.98930 * 3 2 1 5 5 H 1.48500 * 109.46970 * 34.98768 * 3 2 1 6 6 H 1.48497 * 109.47210 * 154.98591 * 3 2 1 7 7 C 1.38811 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00366 * 172.63627 * 7 2 1 9 9 N 1.36942 * 119.99907 * 352.64093 * 7 2 1 10 10 C 1.46927 * 125.37611 * 185.26717 * 9 7 2 11 11 C 1.54186 * 106.26045 * 162.12542 * 10 9 7 12 12 H 1.08997 * 109.28533 * 271.45150 * 11 10 9 13 13 C 1.50710 * 110.50289 * 151.09648 * 11 10 9 14 14 C 1.51325 * 113.54939 * 289.39084 * 13 11 10 15 15 C 1.51626 * 111.98019 * 304.61499 * 14 13 11 16 16 N 1.44504 * 112.65532 * 42.75956 * 15 14 13 17 17 C 1.34772 * 116.63505 * 154.60455 * 16 15 14 18 18 O 1.21573 * 120.00162 * 177.20214 * 17 16 15 19 19 C 1.47703 * 119.99842 * 357.20059 * 17 16 15 20 20 C 1.40103 * 120.02786 * 25.74747 * 19 17 16 21 21 C 1.36428 * 120.68745 * 180.31664 * 20 19 17 22 22 C 1.39158 * 120.27851 * 359.67690 * 21 20 19 23 23 O 1.34740 * 133.26023 * 180.02562 * 22 21 20 24 24 C 1.34446 * 110.95663 * 179.97438 * 23 22 21 25 25 C 1.33955 * 110.19966 * 0.02562 * 24 23 22 26 26 C 1.40682 * 119.53519 * 0.02562 * 22 21 20 27 27 C 1.39079 * 120.20929 * 0.02562 * 26 22 21 28 28 C 1.44108 * 126.73800 * 334.88129 * 16 15 14 29 29 H 1.09001 * 109.11289 * 253.58782 * 28 16 15 30 30 C 1.46812 * 125.37540 * 5.24191 * 9 7 2 31 31 H 0.97004 * 119.99757 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.09579 * 42.92885 * 10 9 7 33 33 H 1.08997 * 110.09386 * 281.32989 * 10 9 7 34 34 H 1.09000 * 108.66800 * 168.33812 * 13 11 10 35 35 H 1.09006 * 108.56546 * 50.37446 * 13 11 10 36 36 H 1.08997 * 108.97846 * 183.96994 * 14 13 11 37 37 H 1.08998 * 108.97759 * 65.25685 * 14 13 11 38 38 H 1.09000 * 108.84709 * 281.93536 * 15 14 13 39 39 H 1.09004 * 108.84752 * 163.57810 * 15 14 13 40 40 H 1.08000 * 119.65282 * 359.97438 * 20 19 17 41 41 H 1.08006 * 119.86188 * 179.69488 * 21 20 19 42 42 H 1.08007 * 124.89902 * 180.02562 * 24 23 22 43 43 H 1.08001 * 126.92399 * 179.97438 * 25 24 23 44 44 H 1.07996 * 120.33003 * 179.97438 * 27 26 22 45 45 H 1.09005 * 109.84404 * 300.42793 * 30 9 7 46 46 H 1.09007 * 109.83992 * 61.33039 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5044 2.6199 0.8028 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0836 -1.2059 -0.1204 9 7 1.3341 -2.3833 0.1508 10 6 1.9551 -3.7088 0.2773 11 6 0.8758 -4.6364 0.8707 12 1 0.9236 -4.5942 1.9588 13 6 1.0928 -6.0569 0.4164 14 6 0.7886 -6.2759 -1.0497 15 6 -0.6185 -5.8397 -1.4087 16 7 -0.9839 -4.5817 -0.7987 17 6 -1.9328 -3.8591 -1.4262 18 8 -2.3234 -2.8157 -0.9396 19 6 -2.4983 -4.3348 -2.7051 20 6 -2.4937 -5.7027 -3.0080 21 6 -3.0066 -6.1562 -4.1881 22 6 -3.5492 -5.2628 -5.1067 23 8 -4.1135 -5.4156 -6.3207 24 6 -4.4928 -4.2294 -6.8274 25 6 -4.1950 -3.2439 -5.9704 26 6 -3.5649 -3.8876 -4.8106 27 6 -3.0412 -3.4247 -3.6083 28 6 -0.4348 -4.0173 0.4082 29 1 -1.1684 -4.1059 1.2095 30 6 -0.1259 -2.5249 0.2129 31 1 -0.4850 0.8401 0.0004 32 1 2.8141 -3.6577 0.9464 33 1 2.2641 -4.0726 -0.7026 34 1 0.4540 -6.7135 1.0071 35 1 2.1330 -6.3253 0.6009 36 1 0.9012 -7.3351 -1.2807 37 1 1.4998 -5.7066 -1.6482 38 1 -1.3195 -6.6071 -1.0805 39 1 -0.6907 -5.7399 -2.4918 40 1 -2.0747 -6.4048 -2.3024 41 1 -2.9917 -7.2131 -4.4101 42 1 -4.9691 -4.0912 -7.7869 43 1 -4.3806 -2.1885 -6.1054 44 1 -3.0519 -2.3693 -3.3791 45 1 -0.5180 -1.9503 1.0522 46 1 -0.5717 -2.1721 -0.7172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050054145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:40 Heat of formation + Delta-G solvation = 75.211526 kcal Electronic energy + Delta-G solvation = -30419.890300 eV Core-core repulsion = 26471.665283 eV Total energy + Delta-G solvation = -3948.225017 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.55509 -40.84189 -38.28353 -37.09385 -35.51427 -33.38546 -32.81544 -32.09747 -30.67293 -29.95231 -29.10103 -27.21709 -25.75817 -24.56034 -23.87128 -22.65154 -21.87998 -21.42052 -20.83471 -19.64848 -18.22306 -17.80419 -17.40434 -16.76742 -16.22693 -15.99241 -15.91934 -15.36937 -14.87840 -14.40800 -14.34313 -14.14576 -14.00610 -13.88900 -13.58906 -13.15640 -13.05723 -12.78478 -12.55435 -12.47554 -12.25904 -12.16004 -11.62464 -11.29129 -11.06747 -10.94628 -10.81087 -10.69993 -10.62445 -10.34762 -10.21358 -10.15778 -10.00018 -9.89270 -9.60181 -9.06563 -8.59736 -8.41908 -8.33769 -7.95967 -6.65130 -5.55854 -2.90988 0.85021 0.96105 2.25073 2.64100 3.08584 3.36595 3.46644 3.51676 3.54255 3.88529 4.34979 4.54090 4.59705 4.61408 4.78100 4.90481 4.91474 5.06783 5.14404 5.17630 5.24489 5.29001 5.40335 5.49984 5.50972 5.65836 5.72489 5.76298 5.82291 5.93306 5.98187 6.05668 6.09838 6.12518 6.22452 6.24011 6.25788 6.31404 6.45267 6.49447 6.63102 6.74600 6.81671 7.00817 7.13816 7.64713 7.80845 7.87438 8.13289 8.42922 8.69510 9.35044 9.96442 10.61506 11.52918 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011446 B = 0.003935 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.628894 B = 7113.361782 C = 8916.111011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.004 4.004 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.075 0.925 9 N -0.607 5.607 10 C 0.142 3.858 11 C -0.102 4.102 12 H 0.080 0.920 13 C -0.102 4.102 14 C -0.132 4.132 15 C 0.100 3.900 16 N -0.582 5.582 17 C 0.542 3.458 18 O -0.496 6.496 19 C -0.141 4.141 20 C -0.094 4.094 21 C -0.120 4.120 22 C 0.066 3.934 23 O -0.197 6.197 24 C -0.003 4.003 25 C -0.198 4.198 26 C -0.144 4.144 27 C -0.004 4.004 28 C 0.131 3.869 29 H 0.059 0.941 30 C 0.167 3.833 31 H 0.252 0.748 32 H 0.032 0.968 33 H 0.014 0.986 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.168 0.832 41 H 0.135 0.865 42 H 0.208 0.792 43 H 0.160 0.840 44 H 0.142 0.858 45 H 0.054 0.946 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -16.822 -9.352 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.201 4.201 3 Si 0.735 3.265 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.334 5.334 10 C 0.015 3.985 11 C -0.122 4.122 12 H 0.099 0.901 13 C -0.140 4.140 14 C -0.170 4.170 15 C -0.023 4.023 16 N -0.315 5.315 17 C 0.329 3.671 18 O -0.371 6.371 19 C -0.145 4.145 20 C -0.112 4.112 21 C -0.138 4.138 22 C 0.018 3.982 23 O -0.098 6.098 24 C -0.068 4.068 25 C -0.217 4.217 26 C -0.145 4.145 27 C -0.023 4.023 28 C 0.028 3.972 29 H 0.077 0.923 30 C 0.042 3.958 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.185 0.815 41 H 0.152 0.848 42 H 0.224 0.776 43 H 0.178 0.822 44 H 0.160 0.840 45 H 0.072 0.928 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.105 -16.297 -9.150 19.995 hybrid contribution 0.490 1.122 -0.120 1.230 sum -6.614 -15.176 -9.270 18.973 Atomic orbital electron populations 1.70039 1.04570 1.24845 1.55753 1.24850 0.95639 0.97482 1.02162 0.86218 0.78725 0.84151 0.77384 1.21818 1.21665 1.20730 1.18962 0.90997 0.82617 1.43808 0.90704 1.44398 1.01894 1.00957 1.86154 1.21382 0.93961 0.86508 0.96615 1.21317 0.95722 0.94429 1.00705 0.90125 1.20491 1.01729 0.96154 0.95620 1.21207 0.96583 1.01386 0.97809 1.21771 0.96333 0.85603 0.98572 1.46587 1.38836 1.20044 1.26067 1.18215 0.80490 0.84185 0.84211 1.90905 1.58761 1.21698 1.65698 1.19921 1.04285 0.93777 0.96503 1.22091 0.96453 0.95877 0.96736 1.19584 1.02694 0.98742 0.92784 1.19908 0.98059 0.94820 0.85423 1.83971 1.64022 1.32933 1.28851 1.23907 1.01542 0.81572 0.99767 1.22583 1.04887 1.00627 0.93581 1.19888 1.04871 0.93071 0.96695 1.20720 0.91332 1.00637 0.89653 1.21104 0.94096 0.97432 0.84565 0.92293 1.21725 0.83707 0.86605 1.03727 0.93763 0.94954 0.96821 0.92445 0.91506 0.90702 0.90999 0.92100 0.89188 0.81490 0.84750 0.77589 0.82233 0.84009 0.92817 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.16 10.31 55.49 0.57 -27.59 16 2 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16 3 Si 0.90 22.90 29.56 -169.99 -5.02 17.88 16 4 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.24 -6.85 10.24 -15.06 -0.15 -7.00 16 8 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 9 N -0.61 -16.19 3.39 -171.51 -0.58 -16.77 16 10 C 0.14 2.99 6.65 -3.19 -0.02 2.96 16 11 C -0.10 -1.76 3.05 -91.58 -0.28 -2.04 16 12 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 13 C -0.10 -1.29 5.17 -28.72 -0.15 -1.44 16 14 C -0.13 -1.53 5.83 -28.27 -0.16 -1.69 16 15 C 0.10 1.24 4.38 -5.80 -0.03 1.21 16 16 N -0.58 -10.13 3.09 -171.83 -0.53 -10.66 16 17 C 0.54 10.48 6.72 -12.40 -0.08 10.39 16 18 O -0.50 -11.85 13.76 5.30 0.07 -11.78 16 19 C -0.14 -2.24 5.48 -104.96 -0.57 -2.82 16 20 C -0.09 -1.13 7.35 -39.53 -0.29 -1.42 16 21 C -0.12 -1.33 9.99 -39.89 -0.40 -1.73 16 22 C 0.07 0.85 7.42 -38.32 -0.28 0.56 16 23 O -0.20 -2.29 10.57 4.11 0.04 -2.24 16 24 C 0.00 -0.03 11.95 29.23 0.35 0.32 16 25 C -0.20 -2.20 11.14 -37.61 -0.42 -2.62 16 26 C -0.14 -2.02 6.39 -105.18 -0.67 -2.70 16 27 C 0.00 -0.07 9.64 -38.90 -0.37 -0.45 16 28 C 0.13 2.62 3.11 -69.30 -0.22 2.41 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 C 0.17 4.34 4.13 -3.53 -0.01 4.33 16 31 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.01 0.30 6.69 -51.93 -0.35 -0.05 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.95 7.00 -51.93 -0.36 0.59 16 38 H 0.06 0.59 6.66 -51.93 -0.35 0.25 16 39 H 0.09 1.07 4.85 -51.93 -0.25 0.81 16 40 H 0.17 1.58 3.73 -52.90 -0.20 1.38 16 41 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.21 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.14 2.42 7.85 -52.49 -0.41 2.01 16 45 H 0.05 1.59 7.28 -51.93 -0.38 1.22 16 46 H 0.08 2.29 4.71 -51.93 -0.24 2.05 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -36.19 354.05 -9.87 -46.06 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.89 Total: 1.68 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -3.87 Total: -1.91 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.54 Total: -55.01 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.12 Total: -14.03 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.19 -9.87 -46.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050054145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.271 kcal (2) G-P(sol) polarization free energy of solvation -36.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds