Wall clock time and date at job start Sat Apr 11 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00369 * 2 1 4 4 H 1.48499 * 109.46919 * 275.30561 * 3 2 1 5 5 H 1.48501 * 109.46602 * 35.30229 * 3 2 1 6 6 H 1.48493 * 109.47360 * 155.29873 * 3 2 1 7 7 C 1.38812 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00366 * 327.59367 * 7 2 1 9 9 N 1.36939 * 119.99961 * 147.58564 * 7 2 1 10 10 C 1.46902 * 120.46079 * 156.35115 * 9 7 2 11 11 C 1.53353 * 108.73906 * 124.39134 * 10 9 7 12 12 C 1.52550 * 109.12922 * 52.26081 * 11 10 9 13 13 C 1.52963 * 114.06416 * 75.53632 * 12 11 10 14 14 N 1.47159 * 87.85493 * 139.44407 * 13 12 11 15 15 C 1.34780 * 136.00247 * 153.34359 * 14 13 12 16 16 O 1.21571 * 119.99608 * 2.44385 * 15 14 13 17 17 C 1.47697 * 120.00300 * 182.45232 * 15 14 13 18 18 C 1.40101 * 120.02967 * 173.82931 * 17 15 14 19 19 C 1.36429 * 120.68956 * 180.02562 * 18 17 15 20 20 C 1.39160 * 120.27301 * 359.97438 * 19 18 17 21 21 O 1.34748 * 133.25038 * 179.97438 * 20 19 18 22 22 C 1.34439 * 110.95223 * 180.02562 * 21 20 19 23 23 C 1.33959 * 110.20246 * 359.97438 * 22 21 20 24 24 C 1.40669 * 119.54115 * 0.02562 * 20 19 18 25 25 C 1.39088 * 120.20878 * 0.02562 * 24 20 19 26 26 C 1.47169 * 87.99676 * 333.59490 * 14 13 12 27 27 C 1.52561 * 113.43365 * 302.67099 * 12 11 10 28 28 C 1.46879 * 120.46637 * 336.38005 * 9 7 2 29 29 H 0.96997 * 120.00034 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.58941 * 4.61460 * 10 9 7 31 31 H 1.08996 * 109.59027 * 244.16999 * 10 9 7 32 32 H 1.08998 * 109.53201 * 292.36763 * 11 10 9 33 33 H 1.09003 * 109.53034 * 172.15451 * 11 10 9 34 34 H 1.09002 * 113.48830 * 24.69650 * 13 12 11 35 35 H 1.09001 * 113.49278 * 254.19223 * 13 12 11 36 36 H 1.08008 * 119.65151 * 0.02562 * 18 17 15 37 37 H 1.07998 * 119.86130 * 179.97438 * 19 18 17 38 38 H 1.07998 * 124.90218 * 180.02562 * 22 21 20 39 39 H 1.08005 * 126.92694 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.32900 * 180.25497 * 25 24 20 41 41 H 1.09007 * 113.48394 * 141.15749 * 26 14 13 42 42 H 1.09001 * 113.48934 * 271.65963 * 26 14 13 43 43 H 1.08999 * 109.52998 * 177.21378 * 27 12 11 44 44 H 1.08999 * 109.52363 * 297.42464 * 27 12 11 45 45 H 1.09003 * 109.59029 * 355.37630 * 28 9 7 46 46 H 1.09000 * 109.59349 * 115.81727 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3857 2.1110 -1.3941 5 1 1.5082 2.6176 0.8091 6 1 3.5993 1.4104 0.5850 7 6 2.0102 -1.2022 0.0005 8 1 1.5964 -2.0644 0.5022 9 7 3.2196 -1.2948 -0.6351 10 6 4.1913 -2.3235 -0.2407 11 6 4.5614 -3.1516 -1.4772 12 6 4.9921 -2.2109 -2.5983 13 6 6.3930 -1.6244 -2.4166 14 7 6.6028 -1.8222 -3.8597 15 6 7.3611 -1.2511 -4.8165 16 8 8.1330 -0.3574 -4.5275 17 6 7.2541 -1.7108 -6.2160 18 6 7.9434 -1.0342 -7.2309 19 6 7.8538 -1.4468 -8.5281 20 6 7.0736 -2.5500 -8.8611 21 8 6.8022 -3.1713 -10.0256 22 6 5.9764 -4.2145 -9.8328 23 6 5.6683 -4.3268 -8.5340 24 6 6.3770 -3.2372 -7.8505 25 6 6.4672 -2.8163 -6.5279 26 6 5.6168 -2.9131 -3.8010 27 6 3.9293 -1.1805 -2.9676 28 6 3.5636 -0.3667 -1.7203 29 1 -0.4850 0.8400 -0.0004 30 1 3.7497 -2.9727 0.5153 31 1 5.0854 -1.8468 0.1609 32 1 3.6964 -3.7310 -1.8000 33 1 5.3819 -3.8259 -1.2320 34 1 7.0440 -2.2389 -1.7947 35 1 6.3898 -0.5761 -2.1178 36 1 8.5522 -0.1769 -6.9835 37 1 8.3905 -0.9151 -9.2999 38 1 5.6145 -4.8684 -10.6124 39 1 5.0267 -5.0682 -8.0810 40 1 5.9364 -3.3449 -5.7500 41 1 4.9591 -2.9514 -4.6695 42 1 6.0544 -3.8818 -3.5596 43 1 4.3199 -0.5137 -3.7362 44 1 3.0422 -1.6907 -3.3428 45 1 2.7084 0.2728 -1.9391 46 1 4.4140 0.2461 -1.4214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050531766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:42 Heat of formation + Delta-G solvation = 77.410585 kcal Electronic energy + Delta-G solvation = -29425.772233 eV Core-core repulsion = 25477.642574 eV Total energy + Delta-G solvation = -3948.129659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.80319 -41.09944 -38.99201 -37.37812 -36.22958 -33.23913 -32.65706 -31.44193 -30.54444 -30.36806 -29.69727 -27.46539 -26.32928 -24.56274 -23.73290 -22.94740 -22.68441 -21.71413 -21.13056 -19.75677 -18.38486 -17.95409 -17.56750 -16.94531 -16.53387 -16.46535 -15.95602 -15.89211 -15.18319 -14.60109 -14.48190 -14.29833 -13.98862 -13.85438 -13.67891 -13.42794 -13.35107 -13.13894 -13.00560 -12.75274 -12.51407 -12.30517 -12.13622 -11.82653 -11.73473 -11.71157 -11.25327 -10.72790 -10.62992 -10.61258 -10.45508 -10.21029 -10.03388 -9.86937 -9.63785 -9.48839 -9.01977 -8.68156 -8.63985 -8.51551 -7.05544 -6.02544 -3.24471 0.49930 0.67349 2.01279 2.40025 2.66814 2.73768 3.35183 3.51274 3.56378 3.56550 4.00209 4.21282 4.27147 4.38439 4.54412 4.65304 4.81405 4.83960 4.92202 4.95348 5.00824 5.08042 5.17590 5.26911 5.32474 5.34369 5.39998 5.49097 5.59918 5.73009 5.76449 5.82255 5.83254 5.89261 5.99882 6.01416 6.07066 6.14437 6.19663 6.27740 6.33001 6.42173 6.59318 6.65754 6.71347 6.75005 6.91050 7.67133 7.91761 8.08299 8.27872 8.92662 9.71613 10.09293 11.12592 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016423 B = 0.002781 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.522426 B =10067.686441 C =10364.698725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.031 3.969 3 Si 0.856 3.144 4 H -0.288 1.288 5 H -0.300 1.300 6 H -0.272 1.272 7 C -0.266 4.266 8 H 0.085 0.915 9 N -0.601 5.601 10 C 0.148 3.852 11 C -0.117 4.117 12 C -0.077 4.077 13 C 0.113 3.887 14 N -0.637 5.637 15 C 0.588 3.412 16 O -0.541 6.541 17 C -0.141 4.141 18 C -0.039 4.039 19 C -0.114 4.114 20 C 0.071 3.929 21 O -0.194 6.194 22 C 0.004 3.996 23 C -0.202 4.202 24 C -0.143 4.143 25 C -0.045 4.045 26 C 0.091 3.909 27 C -0.108 4.108 28 C 0.136 3.864 29 H 0.262 0.738 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.148 0.852 37 H 0.139 0.861 38 H 0.210 0.790 39 H 0.162 0.838 40 H 0.149 0.851 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.843 -10.796 -17.753 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.169 4.169 3 Si 0.685 3.315 4 H -0.216 1.216 5 H -0.228 1.228 6 H -0.197 1.197 7 C -0.394 4.394 8 H 0.103 0.897 9 N -0.325 5.325 10 C 0.022 3.978 11 C -0.157 4.157 12 C -0.078 4.078 13 C -0.009 4.009 14 N -0.370 5.370 15 C 0.379 3.621 16 O -0.420 6.420 17 C -0.144 4.144 18 C -0.058 4.058 19 C -0.133 4.133 20 C 0.023 3.977 21 O -0.095 6.095 22 C -0.061 4.061 23 C -0.221 4.221 24 C -0.144 4.144 25 C -0.063 4.063 26 C -0.031 4.031 27 C -0.147 4.147 28 C 0.010 3.990 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.166 0.834 37 H 0.156 0.844 38 H 0.226 0.774 39 H 0.180 0.820 40 H 0.166 0.834 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 14.331 -10.042 -17.971 25.084 hybrid contribution 0.319 0.831 0.003 0.890 sum 14.651 -9.211 -17.968 24.947 Atomic orbital electron populations 1.70016 1.05975 1.26734 1.50461 1.25142 0.94916 0.97356 0.99485 0.87264 0.81034 0.85920 0.77317 1.21559 1.22798 1.19675 1.18844 0.92568 0.96213 1.31744 0.89738 1.44357 1.16274 1.35431 1.36395 1.20913 0.92266 0.90855 0.93745 1.21877 1.00707 0.96992 0.96088 1.21680 0.94103 0.96936 0.95050 1.23122 0.94726 1.02701 0.80311 1.49447 1.42045 1.35581 1.09968 1.17584 0.78901 0.81795 0.83817 1.90780 1.37592 1.31110 1.82489 1.19756 1.02440 0.98654 0.93563 1.20745 0.96278 0.98580 0.90154 1.19602 1.01198 0.95459 0.97017 1.19904 0.98762 0.95740 0.83314 1.84003 1.55734 1.37962 1.31808 1.23991 0.93810 0.90050 0.98242 1.22577 1.05128 1.01005 0.93365 1.19906 1.01904 0.98336 0.94276 1.21462 0.95101 0.94660 0.95113 1.23433 0.89068 0.91462 0.99157 1.21739 0.96908 0.96927 0.99157 1.21197 0.98655 0.92104 0.87066 0.92789 0.91643 0.95945 0.90980 0.92182 0.89650 0.90121 0.83409 0.84366 0.77364 0.82042 0.83378 0.89750 0.89245 0.92638 0.90871 0.90701 0.96055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.97 55.49 0.78 -25.85 16 2 C 0.03 0.88 4.98 -17.43 -0.09 0.79 16 3 Si 0.86 21.84 24.93 -169.99 -4.24 17.60 16 4 H -0.29 -7.18 6.68 56.52 0.38 -6.80 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.27 -7.15 9.93 -15.06 -0.15 -7.30 16 8 H 0.09 2.40 8.03 -52.49 -0.42 1.98 16 9 N -0.60 -13.52 2.75 -172.18 -0.47 -14.00 16 10 C 0.15 2.64 6.42 -3.64 -0.02 2.61 16 11 C -0.12 -1.60 5.31 -26.78 -0.14 -1.75 16 12 C -0.08 -1.05 0.83 -155.17 -0.13 -1.18 16 13 C 0.11 1.58 7.57 -8.22 -0.06 1.51 16 14 N -0.64 -8.70 3.45 -186.50 -0.64 -9.35 16 15 C 0.59 8.93 8.00 -12.40 -0.10 8.83 16 16 O -0.54 -9.95 17.12 5.30 0.09 -9.86 16 17 C -0.14 -1.80 5.87 -104.96 -0.62 -2.41 16 18 C -0.04 -0.44 9.51 -39.54 -0.38 -0.82 16 19 C -0.11 -1.15 9.99 -39.89 -0.40 -1.54 16 20 C 0.07 0.77 7.42 -38.32 -0.28 0.48 16 21 O -0.19 -1.89 10.57 4.11 0.04 -1.85 16 22 C 0.00 0.02 11.95 29.23 0.35 0.37 16 23 C -0.20 -1.63 11.15 -37.60 -0.42 -2.05 16 24 C -0.14 -1.54 6.39 -105.18 -0.67 -2.21 16 25 C -0.05 -0.50 9.26 -38.89 -0.36 -0.86 16 26 C 0.09 1.00 5.63 -8.37 -0.05 0.96 16 27 C -0.11 -1.82 5.25 -26.77 -0.14 -1.96 16 28 C 0.14 2.87 4.25 -3.65 -0.02 2.85 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.07 1.16 7.90 -51.93 -0.41 0.75 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 35 H 0.08 1.28 7.53 -51.93 -0.39 0.89 16 36 H 0.15 1.60 7.64 -52.48 -0.40 1.20 16 37 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.21 0.53 8.06 -52.49 -0.42 0.11 16 39 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.15 1.43 3.79 -52.49 -0.20 1.23 16 41 H 0.08 0.85 6.10 -51.93 -0.32 0.54 16 42 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 43 H 0.05 0.91 7.95 -51.93 -0.41 0.50 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.07 1.78 4.69 -51.93 -0.24 1.54 16 46 H 0.02 0.46 7.17 -51.93 -0.37 0.08 16 LS Contribution 365.38 15.07 5.51 5.51 Total: -1.00 -33.80 365.38 -8.74 -42.54 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.12 Total: -1.06 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -3.67 Total: -3.68 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.34 Total: -49.20 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.13 Total: -11.71 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.24 Total: 17.60 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.80 -8.74 -42.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050531766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.948 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds