Wall clock time and date at job start Sat Apr 11 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 120.00010 * 2 1 4 4 H 1.48505 * 109.47002 * 239.99795 * 3 2 1 5 5 H 1.48495 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47022 * 120.00406 * 3 2 1 7 7 C 1.38801 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99941 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99819 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47313 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99509 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00226 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00092 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47039 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47166 * 179.97438 * 15 14 13 17 17 H 1.08999 * 110.88219 * 51.12134 * 16 15 14 18 18 C 1.55153 * 111.00613 * 287.20280 * 16 15 14 19 19 C 1.54319 * 102.86315 * 206.22923 * 18 16 15 20 20 N 1.47022 * 107.27318 * 22.52124 * 19 18 16 21 21 C 1.34784 * 125.64434 * 180.97007 * 20 19 18 22 22 O 1.21283 * 119.99649 * 179.69258 * 21 20 19 23 23 C 1.50697 * 119.99774 * 359.42155 * 21 20 19 24 24 C 1.53782 * 113.61267 * 279.12962 * 23 21 20 25 25 C 1.53955 * 87.02174 * 220.05211 * 24 23 21 26 26 C 1.53782 * 113.60998 * 181.52834 * 23 21 20 27 27 C 1.47418 * 108.70432 * 0.70876 * 20 19 18 28 28 H 0.97008 * 119.99630 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47011 * 60.00210 * 10 9 7 30 30 H 1.09003 * 109.47330 * 300.00150 * 10 9 7 31 31 H 0.97006 * 119.99720 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.46961 * 60.00012 * 14 13 11 33 33 H 1.08991 * 109.47438 * 299.99808 * 14 13 11 34 34 H 1.09002 * 109.46930 * 60.00366 * 15 14 13 35 35 H 1.09003 * 109.47551 * 300.00221 * 15 14 13 36 36 H 1.09000 * 110.72025 * 324.78360 * 18 16 15 37 37 H 1.08992 * 110.72359 * 88.05701 * 18 16 15 38 38 H 1.08998 * 109.98163 * 263.04813 * 19 18 16 39 39 H 1.08994 * 109.77671 * 141.88358 * 19 18 16 40 40 H 1.08996 * 112.85350 * 50.33396 * 23 21 20 41 41 H 1.09001 * 113.61619 * 334.57727 * 24 23 21 42 42 H 1.09003 * 113.61204 * 105.47158 * 24 23 21 43 43 H 1.08996 * 113.53883 * 270.81530 * 25 24 23 44 44 H 1.09000 * 113.73963 * 139.94722 * 25 24 23 45 45 H 1.08995 * 113.61455 * 254.52197 * 26 23 21 46 46 H 1.09004 * 113.61536 * 25.34842 * 26 23 21 47 47 H 1.08998 * 110.36854 * 94.93658 * 27 20 19 48 48 H 1.09005 * 110.36254 * 217.25731 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7910 -5.5022 -0.0011 13 7 2.8440 -6.3432 -0.0008 14 6 2.3302 -7.7151 -0.0008 15 6 3.5022 -8.6985 -0.0009 16 6 2.9657 -10.1314 -0.0003 17 1 2.2305 -10.2713 -0.7928 18 6 2.3700 -10.5017 1.3836 19 6 2.5250 -12.0365 1.4249 20 7 3.5952 -12.3927 0.4818 21 6 4.0217 -13.6428 0.2135 22 8 4.9123 -13.8201 -0.5905 23 6 3.3963 -14.8196 0.9170 24 6 3.9506 -15.0573 2.3316 25 6 3.9009 -16.5623 2.0112 26 6 4.0184 -16.1712 0.5286 27 6 4.1201 -11.1566 -0.1264 28 1 -0.4850 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8895 30 1 3.1244 -3.7314 -0.8905 31 1 3.8008 -6.1835 -0.0004 32 1 1.7219 -7.8752 -0.8910 33 1 1.7213 -7.8751 0.8889 34 1 4.1109 -8.5385 0.8891 35 1 4.1109 -8.5384 -0.8909 36 1 2.9380 -10.0314 2.1863 37 1 1.3182 -10.2210 1.4383 38 1 1.5921 -12.5133 1.1242 39 1 2.7977 -12.3527 2.4317 40 1 2.3073 -14.8107 0.8705 41 1 4.9611 -14.6744 2.4747 42 1 3.2665 -14.7560 3.1250 43 1 2.9498 -17.0302 2.2653 44 1 4.7600 -17.1192 2.3853 45 1 3.3890 -16.7680 -0.1315 46 1 5.0470 -16.0933 0.1764 47 1 4.9976 -10.8087 0.4185 48 1 4.3656 -11.3245 -1.1751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001058996494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:59 Heat of formation + Delta-G solvation = -66.913180 kcal Electronic energy + Delta-G solvation = -25879.067101 eV Core-core repulsion = 22060.123046 eV Total energy + Delta-G solvation = -3818.944055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.90987 -39.36269 -38.79477 -37.36532 -35.33860 -33.04967 -32.43544 -30.45267 -29.68378 -28.35160 -26.63881 -26.10878 -25.47924 -23.67147 -23.03982 -20.96228 -20.63229 -20.15596 -19.30193 -17.88766 -17.85588 -16.75128 -16.19407 -16.09456 -15.95018 -15.86328 -15.58133 -14.81086 -14.72867 -14.34105 -14.10242 -13.98816 -13.72615 -13.47853 -13.12430 -13.01707 -12.91280 -12.76824 -12.56420 -12.51497 -12.41102 -12.05733 -11.71051 -11.65749 -11.44730 -11.15001 -11.05333 -11.04570 -11.03389 -10.97626 -10.91570 -10.77256 -10.06602 -9.83242 -9.42339 -9.07244 -9.06937 -8.90582 -8.25135 -6.51013 -6.22281 -3.93062 2.21830 2.53363 3.02827 3.08547 3.22996 3.27139 3.30686 3.68396 3.86539 4.01172 4.06430 4.11183 4.19942 4.22284 4.30240 4.36174 4.57606 4.67990 4.81903 4.89566 4.95601 5.03357 5.07378 5.12875 5.15728 5.19565 5.22352 5.26895 5.33718 5.36610 5.37065 5.45139 5.46632 5.52740 5.58444 5.60597 5.72028 5.82023 5.85546 5.90263 5.94541 5.95652 6.12890 6.59576 7.08815 7.58508 7.68691 7.77472 8.34250 8.59724 9.22943 10.85080 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.046079 B = 0.001400 C = 0.001385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.501982 B =19996.556606 C =20215.470890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.740 5.740 14 C 0.122 3.878 15 C -0.120 4.120 16 C -0.097 4.097 17 H 0.090 0.910 18 C -0.131 4.131 19 C 0.101 3.899 20 N -0.619 5.619 21 C 0.537 3.463 22 O -0.541 6.541 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.142 4.142 26 C -0.119 4.119 27 C 0.109 3.891 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.735 -31.252 4.817 32.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.158 4.158 16 C -0.117 4.117 17 H 0.109 0.891 18 C -0.169 4.169 19 C -0.022 4.022 20 N -0.353 5.353 21 C 0.326 3.674 22 O -0.417 6.417 23 C -0.156 4.156 24 C -0.161 4.161 25 C -0.179 4.179 26 C -0.156 4.156 27 C -0.013 4.013 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.113 0.887 47 H 0.088 0.912 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.054 -31.666 4.373 32.736 hybrid contribution 2.313 1.465 0.024 2.738 sum 9.367 -30.201 4.397 31.924 Atomic orbital electron populations 1.70009 1.05959 1.27568 1.46757 1.24985 0.95019 0.99005 0.94497 0.86228 0.79245 0.81245 0.78804 1.19938 1.20795 1.19939 1.22831 0.94882 0.91682 1.59115 0.90976 1.85388 1.04953 0.96317 1.96728 1.23536 1.06570 0.95427 1.04920 1.20310 0.86526 0.86314 0.75122 1.90700 1.15391 1.85641 1.47504 1.46004 1.09953 1.05549 1.78009 1.21240 0.95870 0.80618 1.02465 1.21719 0.98086 0.92675 1.03357 1.22304 0.97393 0.93733 0.98246 0.89117 1.22794 1.02929 0.93606 0.97534 1.22080 0.90525 0.96407 0.93218 1.48523 1.37648 1.05766 1.43349 1.20256 0.82613 0.82633 0.81871 1.90703 1.30933 1.84818 1.35288 1.22785 1.01426 0.93598 0.97828 1.22845 1.01764 0.96979 0.94463 1.22859 1.02614 0.95908 0.96518 1.22816 1.02478 0.93689 0.96651 1.22275 0.96357 0.83264 0.99400 0.92123 0.89228 0.89228 0.76823 0.91642 0.91521 0.90743 0.90650 0.89997 0.89332 0.91220 0.91164 0.87010 0.89743 0.90604 0.89795 0.90862 0.90940 0.88722 0.91221 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.05 13.22 55.49 0.73 -25.32 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 C 0.53 9.65 7.85 -10.99 -0.09 9.56 16 12 O -0.52 -11.56 15.86 5.56 0.09 -11.48 16 13 N -0.74 -9.21 5.56 -60.30 -0.33 -9.54 16 14 C 0.12 1.24 5.58 -4.05 -0.02 1.22 16 15 C -0.12 -0.79 4.84 -26.73 -0.13 -0.91 16 16 C -0.10 -0.60 3.00 -88.47 -0.27 -0.86 16 17 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 18 C -0.13 -0.68 5.91 -24.90 -0.15 -0.83 16 19 C 0.10 0.52 6.46 -3.07 -0.02 0.50 16 20 N -0.62 -4.79 3.33 -170.53 -0.57 -5.35 16 21 C 0.54 5.07 7.37 -10.98 -0.08 4.99 16 22 O -0.54 -7.21 16.16 5.56 0.09 -7.12 16 23 C -0.14 -0.85 3.34 -90.96 -0.30 -1.15 16 24 C -0.12 -0.60 7.64 -25.83 -0.20 -0.80 16 25 C -0.14 -0.63 8.09 -25.83 -0.21 -0.84 16 26 C -0.12 -0.74 7.40 -25.92 -0.19 -0.94 16 27 C 0.11 0.82 6.38 -2.53 -0.02 0.80 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 31 H 0.40 3.76 8.47 -40.82 -0.35 3.41 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.72 7.75 -51.93 -0.40 0.32 16 34 H 0.07 0.44 7.97 -51.93 -0.41 0.02 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.41 7.91 -51.93 -0.41 0.00 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.11 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.08 0.50 8.09 -51.93 -0.42 0.07 16 42 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.76 7.45 -51.93 -0.39 0.37 16 47 H 0.07 0.50 8.04 -51.93 -0.42 0.09 16 48 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 LS Contribution 406.24 15.07 6.12 6.12 Total: -1.00 -36.62 406.24 -10.61 -47.22 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.25 Total: -1.94 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.25 Total: -5.00 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: -0.17 Total: -40.21 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.18 Total: -18.60 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.62 -10.61 -47.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001058996494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.690 kcal (2) G-P(sol) polarization free energy of solvation -36.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds