Wall clock time and date at job start Sat Apr 11 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 120.00010 * 2 1 4 4 H 1.48505 * 109.47002 * 239.99795 * 3 2 1 5 5 H 1.48495 * 109.47072 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47022 * 120.00406 * 3 2 1 7 7 C 1.38801 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99941 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99748 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99819 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47313 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99509 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00226 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00092 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47039 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47166 * 179.97438 * 15 14 13 17 17 H 1.08999 * 110.88219 * 51.12134 * 16 15 14 18 18 C 1.55153 * 111.00613 * 287.20280 * 16 15 14 19 19 C 1.54319 * 102.86315 * 206.22923 * 18 16 15 20 20 N 1.47022 * 107.27318 * 22.52124 * 19 18 16 21 21 C 1.34784 * 125.64434 * 180.97007 * 20 19 18 22 22 O 1.21283 * 119.99649 * 179.69258 * 21 20 19 23 23 C 1.50697 * 119.99774 * 359.42155 * 21 20 19 24 24 C 1.53782 * 113.61267 * 279.12962 * 23 21 20 25 25 C 1.53955 * 87.02174 * 220.05211 * 24 23 21 26 26 C 1.53782 * 113.60998 * 181.52834 * 23 21 20 27 27 C 1.47418 * 108.70432 * 0.70876 * 20 19 18 28 28 H 0.97008 * 119.99630 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47011 * 60.00210 * 10 9 7 30 30 H 1.09003 * 109.47330 * 300.00150 * 10 9 7 31 31 H 0.97006 * 119.99720 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.46961 * 60.00012 * 14 13 11 33 33 H 1.08991 * 109.47438 * 299.99808 * 14 13 11 34 34 H 1.09002 * 109.46930 * 60.00366 * 15 14 13 35 35 H 1.09003 * 109.47551 * 300.00221 * 15 14 13 36 36 H 1.09000 * 110.72025 * 324.78360 * 18 16 15 37 37 H 1.08992 * 110.72359 * 88.05701 * 18 16 15 38 38 H 1.08998 * 109.98163 * 263.04813 * 19 18 16 39 39 H 1.08994 * 109.77671 * 141.88358 * 19 18 16 40 40 H 1.08996 * 112.85350 * 50.33396 * 23 21 20 41 41 H 1.09001 * 113.61619 * 334.57727 * 24 23 21 42 42 H 1.09003 * 113.61204 * 105.47158 * 24 23 21 43 43 H 1.08996 * 113.53883 * 270.81530 * 25 24 23 44 44 H 1.09000 * 113.73963 * 139.94722 * 25 24 23 45 45 H 1.08995 * 113.61455 * 254.52197 * 26 23 21 46 46 H 1.09004 * 113.61536 * 25.34842 * 26 23 21 47 47 H 1.08998 * 110.36854 * 94.93658 * 27 20 19 48 48 H 1.09005 * 110.36254 * 217.25731 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7279 -0.0005 10 6 2.5157 -3.8914 -0.0005 11 6 1.9873 -5.3028 -0.0012 12 8 0.7910 -5.5022 -0.0011 13 7 2.8440 -6.3432 -0.0008 14 6 2.3302 -7.7151 -0.0008 15 6 3.5022 -8.6985 -0.0009 16 6 2.9657 -10.1314 -0.0003 17 1 2.2305 -10.2713 -0.7928 18 6 2.3700 -10.5017 1.3836 19 6 2.5250 -12.0365 1.4249 20 7 3.5952 -12.3927 0.4818 21 6 4.0217 -13.6428 0.2135 22 8 4.9123 -13.8201 -0.5905 23 6 3.3963 -14.8196 0.9170 24 6 3.9506 -15.0573 2.3316 25 6 3.9009 -16.5623 2.0112 26 6 4.0184 -16.1712 0.5286 27 6 4.1201 -11.1566 -0.1264 28 1 -0.4850 0.8401 -0.0004 29 1 3.1243 -3.7314 0.8895 30 1 3.1244 -3.7314 -0.8905 31 1 3.8008 -6.1835 -0.0004 32 1 1.7219 -7.8752 -0.8910 33 1 1.7213 -7.8751 0.8889 34 1 4.1109 -8.5385 0.8891 35 1 4.1109 -8.5384 -0.8909 36 1 2.9380 -10.0314 2.1863 37 1 1.3182 -10.2210 1.4383 38 1 1.5921 -12.5133 1.1242 39 1 2.7977 -12.3527 2.4317 40 1 2.3073 -14.8107 0.8705 41 1 4.9611 -14.6744 2.4747 42 1 3.2665 -14.7560 3.1250 43 1 2.9498 -17.0302 2.2653 44 1 4.7600 -17.1192 2.3853 45 1 3.3890 -16.7680 -0.1315 46 1 5.0470 -16.0933 0.1764 47 1 4.9976 -10.8087 0.4185 48 1 4.3656 -11.3245 -1.1751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001058996494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:58 Heat of formation + Delta-G solvation = -91.304659 kcal Electronic energy + Delta-G solvation = -25880.124795 eV Core-core repulsion = 22060.123046 eV Total energy + Delta-G solvation = -3820.001749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.51150 -40.59784 -39.45635 -38.02501 -36.35744 -34.57602 -33.95339 -31.47485 -30.47253 -29.25793 -27.68890 -27.19634 -26.54409 -24.29894 -23.71299 -21.90115 -21.24036 -21.01865 -19.88554 -19.74417 -18.46025 -17.82425 -17.31413 -17.08904 -16.86632 -16.74744 -16.59002 -16.36988 -15.81753 -15.58546 -15.09073 -14.71673 -14.55453 -14.47286 -14.35088 -13.96259 -13.64054 -13.51868 -13.44145 -13.26687 -13.15934 -13.05775 -12.93233 -12.85508 -12.62453 -12.42563 -12.22030 -12.03497 -11.72881 -11.64217 -11.53730 -11.44536 -11.31811 -11.11990 -10.94390 -10.73896 -10.26817 -10.07390 -9.69017 -8.65540 -8.33614 -6.11685 1.28364 1.44642 1.48045 1.53895 1.57973 1.64110 1.95813 2.27923 2.35198 3.00567 3.31990 3.34066 3.54129 3.60090 3.64423 3.74976 3.81776 3.89894 3.99047 4.12151 4.21496 4.28331 4.31247 4.34652 4.41211 4.52348 4.53550 4.65109 4.68826 4.72685 4.76575 4.80909 4.85851 4.90818 4.99823 5.03139 5.07902 5.12027 5.16264 5.21439 5.28081 5.39039 5.42533 5.48995 5.51113 6.20488 6.47935 6.54338 7.07714 7.10061 7.27945 8.75307 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.046079 B = 0.001400 C = 0.001385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.501982 B =19996.556606 C =20215.470890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.131 4.131 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.714 5.714 14 C 0.121 3.879 15 C -0.107 4.107 16 C -0.089 4.089 17 H 0.086 0.914 18 C -0.128 4.128 19 C 0.098 3.902 20 N -0.619 5.619 21 C 0.528 3.472 22 O -0.592 6.592 23 C -0.133 4.133 24 C -0.117 4.117 25 C -0.131 4.131 26 C -0.128 4.128 27 C 0.107 3.893 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.417 0.583 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.133 0.867 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.057 -31.711 6.134 33.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.282 4.282 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.368 5.368 14 C -0.002 4.002 15 C -0.145 4.145 16 C -0.109 4.109 17 H 0.104 0.896 18 C -0.166 4.166 19 C -0.024 4.024 20 N -0.351 5.351 21 C 0.318 3.682 22 O -0.473 6.473 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.169 4.169 26 C -0.166 4.166 27 C -0.016 4.016 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.254 0.746 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.151 0.849 41 H 0.089 0.911 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.414 -32.149 5.712 33.719 hybrid contribution 1.949 1.486 -0.406 2.484 sum 10.363 -30.663 5.305 32.799 Atomic orbital electron populations 1.70178 1.07971 1.28653 1.47940 1.26108 0.95936 1.03262 0.93701 0.85020 0.77822 0.75770 0.79486 1.18735 1.20413 1.18622 1.23183 0.95363 0.92073 1.58997 0.89912 1.85560 1.10669 0.99236 1.97061 1.23388 1.03502 0.94513 1.06794 1.20045 0.86261 0.86724 0.75177 1.90689 1.17462 1.86144 1.50257 1.45763 1.10327 1.05283 1.75402 1.21389 0.97258 0.79691 1.01869 1.21616 0.96684 0.91612 1.04558 1.22193 0.96760 0.93012 0.98949 0.89594 1.22814 1.03244 0.93662 0.96859 1.22269 0.90205 0.96475 0.93424 1.48649 1.37805 1.05407 1.43285 1.20884 0.82118 0.83784 0.81392 1.90672 1.33302 1.85633 1.37647 1.22902 1.02310 0.91882 0.98287 1.22827 1.01420 0.97186 0.94061 1.22853 1.03658 0.95771 0.94575 1.22823 1.01166 0.94366 0.98256 1.22270 0.97060 0.83723 0.98497 0.92002 0.87129 0.87318 0.74623 0.92780 0.91737 0.89145 0.89896 0.89268 0.88873 0.89971 0.89524 0.84908 0.91104 0.88471 0.87958 0.90684 0.90454 0.91269 0.90813 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.67 13.22 21.65 0.29 -55.39 16 2 C 0.01 0.84 5.49 84.86 0.47 1.30 16 3 Si 1.00 43.17 29.55 68.60 2.03 45.20 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 7 C -0.55 -31.07 9.50 67.95 0.65 -30.42 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 10 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 11 C 0.53 18.80 7.85 87.66 0.69 19.49 16 12 O -0.57 -25.56 15.86 -3.02 -0.05 -25.61 16 13 N -0.71 -16.13 5.56 -463.08 -2.57 -18.70 16 14 C 0.12 2.24 5.58 86.38 0.48 2.72 16 15 C -0.11 -1.12 4.84 30.59 0.15 -0.98 16 16 C -0.09 -0.94 3.00 -9.40 -0.03 -0.97 16 17 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 18 C -0.13 -1.02 5.91 31.78 0.19 -0.83 16 19 C 0.10 0.77 6.46 86.73 0.56 1.33 16 20 N -0.62 -8.91 3.33 -811.82 -2.70 -11.61 16 21 C 0.53 9.90 7.37 87.65 0.65 10.54 16 22 O -0.59 -16.57 16.16 -3.04 -0.05 -16.61 16 23 C -0.13 -1.50 3.34 -11.01 -0.04 -1.54 16 24 C -0.12 -0.94 7.64 31.18 0.24 -0.70 16 25 C -0.13 -0.94 8.09 31.18 0.25 -0.69 16 26 C -0.13 -1.58 7.40 31.12 0.23 -1.35 16 27 C 0.11 1.50 6.38 86.85 0.55 2.06 16 28 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 29 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 30 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 31 H 0.42 6.46 8.47 -92.70 -0.79 5.67 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.28 7.75 -2.39 -0.02 1.26 16 34 H 0.09 0.74 7.97 -2.39 -0.02 0.72 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 0.62 7.91 -2.39 -0.02 0.60 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.13 0.93 8.12 -2.39 -0.02 0.91 16 41 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 42 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.07 1.21 7.45 -2.38 -0.02 1.19 16 47 H 0.07 0.97 8.04 -2.39 -0.02 0.96 16 48 H 0.06 1.08 8.04 -2.38 -0.02 1.06 16 Total: -1.00 -83.36 406.24 1.41 -81.95 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.16 Total: 14.93 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 5.47 Total: -4.62 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -4.99 Total: -85.70 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -0.10 Total: -42.22 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -83.36 1.41 -81.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001058996494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.357 kcal (2) G-P(sol) polarization free energy of solvation -83.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds