Wall clock time and date at job start Sat Apr 11 2020 06:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47366 * 179.97438 * 15 14 13 17 17 H 1.08994 * 110.88964 * 302.57444 * 16 15 14 18 18 C 1.55156 * 111.00331 * 66.45903 * 16 15 14 19 19 C 1.54329 * 102.94390 * 153.57269 * 18 16 15 20 20 N 1.47014 * 107.26939 * 337.80721 * 19 18 16 21 21 C 1.34780 * 125.64790 * 178.95773 * 20 19 18 22 22 O 1.21284 * 120.00238 * 179.97438 * 21 20 19 23 23 C 1.50702 * 119.99733 * 359.97438 * 21 20 19 24 24 C 1.53781 * 113.61554 * 279.13343 * 23 21 20 25 25 C 1.53959 * 87.01883 * 220.05008 * 24 23 21 26 26 C 1.53777 * 113.61329 * 181.52630 * 23 21 20 27 27 C 1.47418 * 108.70711 * 358.93897 * 20 19 18 28 28 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 30 30 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 31 31 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 32 32 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 33 33 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 34 34 H 1.08999 * 109.47369 * 300.00444 * 15 14 13 35 35 H 1.09009 * 109.46793 * 59.99447 * 15 14 13 36 36 H 1.09001 * 110.71923 * 271.93985 * 18 16 15 37 37 H 1.08996 * 110.71995 * 35.03467 * 18 16 15 38 38 H 1.09004 * 109.87524 * 97.22363 * 19 18 16 39 39 H 1.08998 * 109.87827 * 218.38481 * 19 18 16 40 40 H 1.09005 * 112.84846 * 50.33428 * 23 21 20 41 41 H 1.08999 * 113.61238 * 334.56845 * 24 23 21 42 42 H 1.09000 * 113.61131 * 105.46962 * 24 23 21 43 43 H 1.08999 * 113.53566 * 270.80881 * 25 24 23 44 44 H 1.08999 * 113.73920 * 139.94107 * 25 24 23 45 45 H 1.08999 * 113.61488 * 254.52925 * 26 23 21 46 46 H 1.09000 * 113.61765 * 25.42741 * 26 23 21 47 47 H 1.09000 * 110.36907 * 265.29354 * 27 20 19 48 48 H 1.09005 * 110.36836 * 142.96699 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 6 2.9656 -10.1313 -0.0457 17 1 2.3160 -10.3072 0.8118 18 6 2.2284 -10.4427 -1.3749 19 6 2.3785 -11.9733 -1.5031 20 7 3.5369 -12.3680 -0.6885 21 6 3.9872 -13.6273 -0.5213 22 8 4.9569 -13.8370 0.1763 23 6 3.2858 -14.7748 -1.2013 24 6 2.0237 -15.2503 -0.4624 25 6 2.4596 -16.6858 -0.8084 26 6 3.8985 -16.1483 -0.8808 27 6 4.1248 -11.1582 -0.0850 28 1 -0.4849 0.8401 0.0004 29 1 3.1244 -3.7267 -0.9039 30 1 3.1244 -3.7361 0.8761 31 1 3.8007 -6.1835 -0.0260 32 1 1.7212 -7.8796 0.8553 33 1 1.7219 -7.8705 -0.9248 34 1 4.1109 -8.5339 -0.9278 35 1 4.1108 -8.5431 0.8521 36 1 1.1772 -10.1625 -1.3077 37 1 2.7090 -9.9341 -2.2107 38 1 1.4796 -12.4661 -1.1327 39 1 2.5490 -12.2430 -2.5453 40 1 3.1298 -14.6041 -2.2666 41 1 2.0366 -15.0357 0.6062 42 1 1.0948 -14.9466 -0.9450 43 1 2.0763 -17.0381 -1.7661 44 1 2.3002 -17.3996 -0.0002 45 1 4.4809 -16.5687 -1.7007 46 1 4.4250 -16.1797 0.0731 47 1 4.9416 -10.7847 -0.7026 48 1 4.4777 -11.3708 0.9242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001058996495.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:01 Heat of formation + Delta-G solvation = -66.992293 kcal Electronic energy + Delta-G solvation = -25916.330765 eV Core-core repulsion = 22097.383279 eV Total energy + Delta-G solvation = -3818.947486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.90866 -39.36740 -38.78829 -37.36624 -35.33840 -33.04999 -32.43701 -30.42918 -29.69600 -28.35160 -26.62820 -26.10490 -25.48263 -23.64468 -23.10614 -20.89079 -20.62638 -20.16779 -19.33926 -17.86623 -17.80738 -16.79008 -16.19397 -16.17285 -15.96378 -15.68764 -15.61491 -14.88562 -14.81209 -14.32981 -14.05425 -13.97799 -13.65175 -13.40684 -13.12992 -13.09825 -12.96339 -12.74384 -12.56256 -12.46984 -12.42248 -12.07357 -11.71338 -11.63550 -11.43762 -11.14989 -11.07398 -11.03536 -11.03270 -10.97396 -10.90688 -10.76710 -10.06253 -9.82561 -9.42554 -9.08057 -9.06778 -8.90654 -8.24950 -6.51193 -6.22733 -3.93346 2.22035 2.53500 3.02714 3.08351 3.21650 3.27360 3.31486 3.68229 3.87079 4.01538 4.07828 4.10869 4.19562 4.23195 4.30944 4.36289 4.56842 4.70661 4.82141 4.89759 4.94048 5.03971 5.07820 5.12565 5.16203 5.19607 5.22910 5.27983 5.34224 5.37084 5.38302 5.45390 5.46776 5.53060 5.59330 5.60699 5.71191 5.81883 5.86178 5.90344 5.94459 5.96046 6.12803 6.59481 7.09027 7.58606 7.68556 7.77593 8.34213 8.59543 9.22709 10.84713 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.045908 B = 0.001418 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.771167 B =19738.902150 C =20131.430783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.740 5.740 14 C 0.122 3.878 15 C -0.120 4.120 16 C -0.096 4.096 17 H 0.090 0.910 18 C -0.131 4.131 19 C 0.101 3.899 20 N -0.619 5.619 21 C 0.537 3.463 22 O -0.541 6.541 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.142 4.142 26 C -0.118 4.118 27 C 0.110 3.890 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.354 -31.210 -3.759 32.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.159 4.159 16 C -0.116 4.116 17 H 0.109 0.891 18 C -0.169 4.169 19 C -0.022 4.022 20 N -0.353 5.353 21 C 0.326 3.674 22 O -0.418 6.418 23 C -0.156 4.156 24 C -0.161 4.161 25 C -0.179 4.179 26 C -0.156 4.156 27 C -0.013 4.013 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.094 0.906 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.113 0.887 47 H 0.088 0.912 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.722 -31.644 -3.377 32.334 hybrid contribution 2.393 1.487 -0.134 2.820 sum 8.114 -30.157 -3.510 31.426 Atomic orbital electron populations 1.70021 1.05957 1.27453 1.46858 1.24991 0.95021 0.99019 0.94509 0.86169 0.79421 0.81565 0.78352 1.20268 1.20737 1.19695 1.22872 0.94914 0.91664 1.58978 0.90927 1.85389 1.04966 0.96346 1.96719 1.23534 1.06565 0.95426 1.04926 1.20308 0.86524 0.86312 0.75120 1.90699 1.15391 1.85639 1.47511 1.46005 1.09956 1.05553 1.78004 1.21245 0.95879 0.80612 1.02479 1.21713 0.98080 0.92694 1.03363 1.22295 0.96751 0.93814 0.98758 0.89147 1.22789 1.02379 0.93788 0.97965 1.22080 0.88694 0.96122 0.95326 1.48519 1.31154 1.06087 1.49515 1.20260 0.83748 0.82281 0.81082 1.90702 1.27285 1.83854 1.39921 1.22788 0.98467 0.93399 1.00979 1.22849 0.96037 0.96397 1.00785 1.22860 0.96476 0.96310 1.02264 1.22814 0.96588 0.92859 1.03357 1.22276 0.95767 0.83931 0.99316 0.92181 0.89229 0.89223 0.76824 0.91635 0.91495 0.90758 0.90651 0.89295 0.90012 0.91083 0.91280 0.87038 0.89698 0.90573 0.89810 0.90849 0.90963 0.88726 0.91200 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.30 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 11 C 0.53 9.63 7.85 -10.99 -0.09 9.55 16 12 O -0.52 -11.54 15.86 5.56 0.09 -11.45 16 13 N -0.74 -9.19 5.56 -60.29 -0.33 -9.52 16 14 C 0.12 1.23 5.52 -4.04 -0.02 1.21 16 15 C -0.12 -0.79 4.84 -26.74 -0.13 -0.92 16 16 C -0.10 -0.59 3.07 -88.47 -0.27 -0.86 16 17 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 18 C -0.13 -0.70 5.59 -24.89 -0.14 -0.84 16 19 C 0.10 0.53 6.47 -3.07 -0.02 0.51 16 20 N -0.62 -4.80 3.33 -170.52 -0.57 -5.37 16 21 C 0.54 5.08 7.37 -10.98 -0.08 5.00 16 22 O -0.54 -7.21 16.17 5.55 0.09 -7.12 16 23 C -0.14 -0.85 3.34 -90.96 -0.30 -1.15 16 24 C -0.12 -0.62 7.64 -25.82 -0.20 -0.82 16 25 C -0.14 -0.65 8.09 -25.83 -0.21 -0.85 16 26 C -0.12 -0.75 7.40 -25.92 -0.19 -0.94 16 27 C 0.11 0.82 6.38 -2.53 -0.02 0.80 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.40 3.75 8.47 -40.82 -0.35 3.41 16 32 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 33 H 0.07 0.72 7.51 -51.92 -0.39 0.33 16 34 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 35 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.43 8.01 -51.93 -0.42 0.01 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.11 0.52 8.12 -51.93 -0.42 0.10 16 41 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 42 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 0.76 7.45 -51.93 -0.39 0.38 16 47 H 0.07 0.51 8.04 -51.93 -0.42 0.09 16 48 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 LS Contribution 405.95 15.07 6.12 6.12 Total: -1.00 -36.59 405.95 -10.61 -47.20 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -8.25 Total: -1.91 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.25 Total: -5.04 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: -0.17 Total: -40.19 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.18 Total: -18.57 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.59 -10.61 -47.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001058996495.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.795 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds